AMCG00006730 (otogl,LOC107564906,LOC107736094,LOC107662850)


Basic Information

Item Value
gene id AMCG00006730
gene name otogl,LOC107564906,LOC107736094,LOC107662850
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 16903520 ~ 16940186 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006730
GACGCAGCCCTGAAATGAACATAAAGaggaatttaaaattaatgattCCTTGGATAGTGGTATTATTCTGCCAACTTCTCCTTTTTCAAGGAAAAGGTTTAATGCACTTCGACAGAAACGAGATCTCTTCGGAGAAGAGGCCACTGCTTTCTGAGGGTTCACTGCCAAGGAGCATCAGTCATAATCAGTCTTTGGCACGTGATGCACCTACAGGGTCCTGCGGTTGCCTTAATGGAGGCTGGTGCATGGATGGTGGTCTCTGTGACTGCAGCCAATTCCAGGCTCTCGGGGACAGATGTCAGATCGTCCCTAACGTTGGAGAAGATCGGGATGGAATCTGCAGATCGTGGGGACAACACCACTTCGAAACCTTCGACGGCATTTACTATTACTTCCCAGGGACGTGTTCCTACATCCTTGCCAAAGACTGCCACGCAACAGAACCACAGTACACAATATGGGTTCATAACAGCCGGGCCTGTGAAGGCACTGTGTATTCCTGTCTCAGATCTCTCAGCTTGTACTTCCCCAATGAGGACGAGATCCACATTACCGGCTATGAAGTCAAGAAGGGTGGCATCAGACTGACTCTGCCCCAGACCATTCGCAATGTGTTCATTGAGAGACTGGCCGATTACATCCTGGTAAAAAGTACCTTTGGGTTTTCCCTGGCCTGGGACGGGGGCTCTGGCGTTTATATCAAAATGACGGAGGATCACAAAGGCAGGCCTTGTGGACTCTGTGGAAACTACAATGATGATGGGTCAGATGATCTCACCACCAGCTACACGGATGGGTGTGAAGACAGCTTTGTTCACCGAGACTGTATCAGCTGCTGCCCGCCCACCTGCACGTTTGAGAAGGAATGTCTGGGGAGCAATCTGCACTGTCTGGATGGCTGTTACTGCCCTGATGGACTGGTAATGGAGAATGGGACGTGCATCGCAGTGGCCAACTGCCCGTGTGTGTACCACGGCACTGCGTACCCCCTGGGCCATGTTCTGGagcagggctgcagtgtgtgTGGTGGTGTGTGGAACTGCACAGAGAACAACTGCACAGCGGAGTGCTCTGTCACAGGAGACTCTCACATCACCTCCTTTGATGGCCGGATCTTCATGTACAGTGGGACCTGCCAGTATGTCCTGGTGAAGAGCTGGAGAACAACCAGGTTCACACTGACATTACAGAACATGCCCTGCGGTGAGAACGTGGAGCACTCGTGTATTCATTCTGTGACTCTTGTGGTGGACGAGGACGTGAGCAGGCAGGTGACACTAACCAGAGACGGGGAGGTTCTCATCGGCGTTAACCAGGCTGCCAGTCTGCCCTTCTCCGATGAAGTGGGGGGAGGCTGTACGTGCTTCTGGACAGCAGCTGGAAGGGGGGGACGATCTCCATCAGGAATGATTGAAGGCACTCCTCAGCTTCACATCAATGCGTGGAAGGTCTCCTCAGCTTGCACAAGCCCCGTTAATATTCCCATCATTGATCCTTGTGAGATGAACCAGCAAAATGTTTTCTATGCCTCGCAGTGTGATGTCATCAATGAAGAGCTGTTTGCCCCATGCCACTCCTACATCAGCCCCAGTGTGTACTTCCAGCAGTGCCGCTTCCAGGCCTGTCGCTGTGGAAGTACCTGTCTGTGCACAGCGCTGGCACACTACGCCTACGTCTGCGCCAAACACAAAGTGATCATCGATTTCAGGACCCACGTCTCCGAGTGTGGTGTGGTATGCCTTGGAGGAATGCAGTACCACACGTGCACGTCGTTGTGCGGGAAGACATGCCAGTCCCTCTCCAGCGCCGAAGTGTGTGACGAGGACTGCTCGGAGGGGTGTAACTGCCCTGCAGGGACTTACTTCGATGATGTCCGGCAGCGCTGCATCACCATGTCCCTGTGTCACTGCTACTTCATGGGCTCTGTGTTTCAGCCGGGGGAGGTTTCATTCAGTGCATCTGGCCCATGGAATGGACGGATGGAGTGTGCCCCCGAAGAGCCAGAACCAGAACCAGGAGAATGCCCCGAAGGAAAGATATACTTCAACTGCAGAGAGCAGCAGCCCGGCCAGCCGCGCACCGGCATCGCCTGTGAAGTGACCTGCCGCAACATGATGATGAACCTCACCTGTCTGCCCACCACGCCCTGTGTGCCCGGCTGCGGCTGCCCGGCAGGGCTGGTGAGACACAAGCACGAGTGCTATTTTCCAGAAAACTGCCCGTGTGCTTGGATGGGGCAAGAGTATTTACCAGGAGAAATAGTGGCTACGCCTTGTTATAAATGCATTTGCCACCGGGGGTATTTTAACTGCACCTACTACCCCTGTCCTGCAGTGTGTACGGTATATAGTGACCGCCATTACCACACCTTCGATGGGTTGGAATATGATTATGTGAGCGACTGCCAGGTCTATTTAGTGAAGaGCATCAATGACACCGAAGTCTCCATAACCACTCAAAATAAAGATTGCTATGAAAGTGGGATTGTTTGTATGAAATACTTGGTGGTGTATGTCGGACTtacaaaaatctatttcagtGACAACTCTGGAAAACCGagTTCCTCAACTGTAATTGGGAAGGGCTATGAGTTTCAGCTGTGGAAAGCTGGGTATTACATAGTGGTTCACTTCCCCAAGCAAGAAATCACCATCCTCTGGGACAAGAAGACCACAGTGCACATACAGGCCGGGCCAAAGTGGAAGGGTCAGCTGACAGGGATGTGCGGCAATTTTGACAAAATAACGGTGAATGACATGACGACGTCTAGTAACATGGAGCTGAGCAACGCACAGGCCTTCGGAGACAGCTGGGCCCTCGGACAGtgtgaaAGTGCATTCGTCGTGAAGAGGCCGTGTGAAGGAGACCTGAGCCGGCAGCCATATGCCAAAAGGGAATGTGCTATTTTATACAGTGACGTCTTTGCCCCCTGTCACAATGTGGTGGACGTcacctggttttacaaaaactGCCTGACAGACACCTGCAACTGTAACCGTGGTGGAGACTGCGAGTGTCTCTGTACCAGCATCGCAGCGTACGCCCACAAGTGCTGCCAGCAGGGGGTAGCCGTGCACTGGAGATCTCCCACTGTGTGTGCATATGACTGTGAATATTACAACCAAGAGCTGGGAGAAGGACCCTATATATTATTTAGTGTTGCATACAATGACACCGTTTTCGGGGCCAATTTGACAAGCGGAGAGGTTTTTCCATTGCCTAAAATCAGTGCCGCAGGGGGAGTGCTCTTCAACTTCATGATAACTGCAGGACTTTACAAGGACAAGTATTCACGACTCCCTGTTGTCTCCTTCGAGTCTGCCGAGAGGCCCAACTACttcctgtgtgtgagtgagagccGGGCGCTGCGTCTGGAGCGCTGGAGCGTTGGAGAGGACTTCCGGCACAGAGCCACCTTCCTGCACCACCAGGGCCTGTGGCTGCCGGGCTACAGCTCCTTCGAGGTGTACAGCCAGAAAGGCCTGTTCCTCAGCCTCACCCGGACTGAGGTGCGAGCGGTGGGCTATGACTACTCGCAGGAATTCAGGCAGATCACCAGTTTTACAATCGAAGACAGCAGTTTTGTGATTCCATACAGGATAATGTGTGAGTGGAAATACCACCCCTGTGCAAGTCCCTGTGTCGAAACCTGCAGTGATCCACATGCTACCGATTGCAATTTTCTTCCCCCGGTAGAAGGCTGCTTCCCACGCTGCCCTAAGAACATGATTCTTGATGATGTAACCAGAAGATGTGTTTACCCAGAAGACTGTAATAAGAGGTATCAAAAGTGCAAAATAGTGGATGTAAAACCTATGAAAAGGTCTTTCTTCACAGAGTGCATAACTTTGTTCATCTTTGCAGGCATTATCTTACCCCCAACGCCAACCCCTTACATGTTTGTGACAAGATCCAACAGAACTACAACTGCTACAACCACAATGGCTCCCACGACCGTGCCAAGCACGTCTGCCACGACAGAACTACGGACAACCTCCACTGAGAGGACAACATCTCCTGCTCAGCCTACCACTATAGTGGCCACGACTACAGCTTCCACCCTGGTTCCAATTTCACTGTCTCCATTGACCACTCTATCCACTACAACTTCAGTGTCCAGTACACACACTGTGCAGACATCTGCTGTGACCGACGCTGCCACAACCCGTCCTTTCCTCACCACCAGCGCTGTCCCAGCATTGACTAGTGAAAGGACTACCCAAATGACGGCAGCGACACCAGTCCTGCTGTCTACCGCTGCCACTGAAGCAACCATCCCTTCAACAACGGCACCCATGACTGTGTCCACAACTGCGTACGCAACTTCAGAGAACCTGAGCACCTCCTCTACTGAAGGACCCTCCACCTTACAGCCCACAACCACAGCTGAACCAACCTCAACAGTCACCTTGGAAACAACCGTCTCAAGCCTCCCTCTTCTGACTTCCACAGCGTCCACAACCGTTACGGAGACCTCGACTCTGACGACAGAAGTGACAACAGCCGCCACCACTGCGTCTCCTACATCAACAACCGAGCTCAGGACTACTCCTTCTGTCACCACAGTCCCACAAACAACTACTGTTACTGAACCAGAGTCCACGACAAGTGCGCAGACCACTCCCGTTGCCACTACTGTCCCAGAAGGTCCTCCCACTACCACTGCTACACCATCATCTGTTGCTGTGAGCGAAACTGAGTCACCACTGCCTTCCAGAAGCCCCGTCCCCACTAGCCTGCCTTCCTCCACAGCCTCAGCTGCCCCAACAAGTGTCACTTCAGCCCCAGAGGTTGAGACTCCAGAGATTGTGACAGCCACACCACCCGTCATGAGCACCGAGCACTCAACGCCCTCCGCCTCCGAAACAGCCAGCCCTGGCACAGTTATACCCACAATGCTCCAGTCAACGTCCACATGCACTCCTCCGTATTCCTACAGGGTGGATGAATGCAGTGAATATATCTGCTTCAATGGCCACCTGATGTTCCACAATGCCTCTCTGCTGTGCCGGAACAACGTGTCTCAGCCAAACTGCGGCCTTCTGGGAATGCCAGTCCAGATTAACAGAGATCCCTGCTGTCCTCAGTGGGAATGTCCTTGTCGCTGTTCCATTATATCAGATCTGCGTGTCATCACATTCGATGGCAATAACGTTGCCCTTTATGATAATGGGTCTTACATTTTGGTTCATCTTCCCAGAGAAAATATTGTGGCTCATATCGACAAATGTCCAACCAGTGAgAGTGTTAACTCTATAAGACGTCCTACGCCGACTGGTGGGACATCTGGCCTGTGTTTTAAGAAGCTCAATATTACAACGCATTCCTATAAGATTCTCATTAACCGCCTGGATAGAAAGGTGTCAGTAAACTTCATAAACGCCCGGCTGCCGTTCACCCGGCAGAACCTGCACATCGACGACACCGGGACCATGTACTTAATCAAGACCCCCGGGGGCGTCAGTATCCAGTGGTATCACAGCACCGGGATCATAGTGCTGCAGTACAGCCCGCCCTCCAACACAACCAGTGGGACGCAGGGCCTGTGTGGCTGCTGTGATGGGAATCCCGCAGACGACCTGAAGCTCTCCAATGGGACGATCATTAAGAACGTGGAGGACATCCCAGTGTTCCTGCACAGCTGGATGGTGCACACCTCGGAGGAGACGGACTACTTCAGGAGAGTGGGAGATAACTGCACCACTGGCAACTGCACTAAGTGCTTCCAGATGTTGAATCAAAGTCCTTTCACTGTGTGTCATAGAAAGGTTTCCCCAGAACAATTCTGTGACAAGATCTGGGCTGGAGATCTGCATTATAAAGACCACGAATGTGATTTCCTGGCTGCATATGTGGCAATCTGTTACACTCACAACATCTGTATCAACTGGAGGACTCCAGAGTTTTGTCCACTGAAGTGCCCCCCAGGAAAGGAGTACCACCCTTGTGTCAGCACCTGTAAAACCAAGACGTGCCAAAACCGAGAGTATTATGAGGAATCCACCTGTTCGTATATTAGGGAGGAGTGCGTGTGTAAAAGTGGGACCATCCTTCACCGAGCCGACTCAGCTTTCTGTGTCACAGAGGACCGGTGCGTGTGCACTGACAACGAAGGACGTCCCAGGGCGCCGGGAGAGGTGTGGAACGGCTCCAACAGGGGCTGCTGCATGTACAAGTGTGTGGAGAACGGGAGCATCATCGCCGTCGAGCCCGACTGCACTGAAGTGCCACCTCCCCTctgcgagagagagggagagtatGTCATCGATGTCATTGAGGACGGAGCCTGCTGTCCCAAGAAAATCTGCGAGTGCAATTTGACCATCTGTGATAATGAGGTTCCTACTTGTGAAAATGGAAATAAGCTCATGATTGGATACAGCACCGTGTCCTGTTGCCCTGAATACAGATGCGAGTGTGACAGCATGGCGTGTCCGACTGTGATGCCCCCCGATTGCAGAGAGGACCAGTTCCTGGTGGAAGTGAGGGAGGACAAGTCCTGCTGCTATTCTTTCCTCTGTGGTAAAACAGTGTCGGCTTAC

Function

symbol description
otogl Predicted to enable alpha-L-arabinofuranosidase activity. Acts upstream of or within otolith morphogenesis; semicircular canal morphogenesis; and sensory perception of sound. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in inner ear; macula utricle; and otolith. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 84B. Orthologous to human OTOGL (otogelin like).

NR:

description
PREDICTED: otogelin-like protein

GO: NA

KEGG:

id description
K25030 OTOG, OTOGL; otogelin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006730 True 6542 mRNA 0.52 43 16903520 16940186

Neighbor

gene id symbol gene type direction distance location
AMCG00006729 rps16,LOC103382554 coding upstream 2027 16898281 ~ 16901493 (+)
AMCG00006728 syt1,LOC101079537 coding upstream 205409 16695465 ~ 16698111 (+)
AMCG00006727 syt1 coding upstream 226278 16658295 ~ 16677242 (+)
AMCG00006726 NA coding upstream 478314 16377780 ~ 16425206 (+)
AMCG00006725 NA coding upstream 547096 16354450 ~ 16356424 (+)
AMCG00006731 NA coding downstream 76 16940262 ~ 16947460 (+)
AMCG00006732 LOC108413201 coding downstream 14702 16954888 ~ 17022710 (+)
AMCG00006733 myf6 coding downstream 86136 17026322 ~ 17037135 (+)
AMCG00006739 NA coding downstream 161536 17101722 ~ 17120725 (+)
AMCG00006738 NA coding downstream 196971 17137157 ~ 17143440 (+)
G111941 NA non-coding upstream 40165 16863156 ~ 16863355 (+)
G111909 NA non-coding upstream 93050 16779402 ~ 16810470 (+)
G111898 NA non-coding upstream 181472 16714818 ~ 16722048 (+)
G111788 LOC106576514 non-coding upstream 1033719 15849921 ~ 15869801 (+)
G111786 NA non-coding upstream 1118758 15784519 ~ 15784762 (+)
G112106 NA non-coding downstream 1274607 18214793 ~ 18215048 (+)
G112181 NA non-coding downstream 1753692 18693878 ~ 18694311 (+)
G112182 NA non-coding downstream 1754973 18695159 ~ 18745217 (+)
G112207 NA non-coding downstream 1960753 18900939 ~ 18903543 (+)
G112233 NA non-coding downstream 2155442 19095628 ~ 19100398 (+)
AMCG00006672 NA other upstream 2964045 13933666 ~ 13939475 (+)
G111197 NA other upstream 3860072 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 4251705 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 4580242 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 7335244 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 3997311 20937497 ~ 20944977 (+)
G112567 NA other downstream 4108150 21048336 ~ 21049038 (+)
G112600 NA other downstream 4202679 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 4325067 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 4677446 21617632 ~ 21622508 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location