AMCG00006731


Basic Information

Item Value
gene id AMCG00006731
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 16940262 ~ 16947460 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006731
ATGTCCTGTTTTCTTCCAGTCTGCGAGTCTTGTATCGAACCCATTCCCACATGCAATGGCGGTGAACTTCTGGCTGTTGATCTCAATACCACCCATCGCTGTTGTCCTCAATATCAATGTGTCTGTGATGTGAGCCTGTGCCCAAGAACTAACACTGAATGCTCTCCTGGAACGGCTCTGGTGAAGAAGACTGTTCCTGGACACTGCTGTCCTGAGTGGCAATGCGAATGCAGCTGTCAAAATAATTCTGTCCCATTCTGTCAGGTGGGAGAGATTCATGTTGAGGACCCGGACTTTACCAGTGCCTGTGGTTGCACTCAGTACATTTGCAAGAAGGCAGACGTGTGCCTGTTTCAGGGAGTCACTGTGCTGAGCCCAGGCCAGTCCATGGTCCAGTACTTTGAAGGGGACCTCTGTTACACAGTGCAGTGCCTACACGAGATGGATATCGTCACAGGTTTCCATGCTATGGAAGTGTCCACGGTTAACTGCTCAGAGAAATGTGGAGCTCATCAAGTTTATGTTCCGTCGTCAGACTCTCACATCTGTTGTGGCTCCTGCAAGAATGTGTCGTGCACTTTCACAAATGAGAACGGCACCATCGATGTCTACAGGGCAGGGATTACATGGGTTTCAAACTGCACTAGATATGATTGTGTGGAGACTGCGGTTGGGGCTGTGATACTTGGCTCCGGAATTGTTTGCCCACCTTTCAATGAGACTGAATGTATACAGAACGGGGGCACCGTGCAGAGCTTCATCGACGGCTGCTGCAAGACATGTAAGGATGATGGTCGAACCTGCAAAAGAGTGACAATCAGAACCACAATCAGGAAAGATGACTGCAGAAGTGGCACTCCTgtaaCAGTCTACTCTTGTGATGGGAAATGTCCTTCGGCaaccattttcaatttcaacatTAACAGCCACGCACGGTTCTGCAAATGCTGCCGAGAAAATGGCTTACAAAACCGCACTGTGCAGCTCTACTGCACAAGAAATGGCACTTCAGTTGACTACACCTTCCAGGAGCCAATGGATTGTACCTGTCAGTGGAATTAG

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006731 True 1062 mRNA 0.49 10 16940262 16947460

Neighbor

gene id symbol gene type direction distance location
AMCG00006730 otogl,LOC107564906,LOC107736094,LOC107662850 coding upstream 76 16903520 ~ 16940186 (+)
AMCG00006729 rps16,LOC103382554 coding upstream 38769 16898281 ~ 16901493 (+)
AMCG00006728 syt1,LOC101079537 coding upstream 242151 16695465 ~ 16698111 (+)
AMCG00006727 syt1 coding upstream 263020 16658295 ~ 16677242 (+)
AMCG00006726 NA coding upstream 515056 16377780 ~ 16425206 (+)
AMCG00006732 LOC108413201 coding downstream 7428 16954888 ~ 17022710 (+)
AMCG00006733 myf6 coding downstream 78862 17026322 ~ 17037135 (+)
AMCG00006739 NA coding downstream 154262 17101722 ~ 17120725 (+)
AMCG00006738 NA coding downstream 189697 17137157 ~ 17143440 (+)
AMCG00006742 NA coding downstream 459569 17407029 ~ 17466135 (+)
G111941 NA non-coding upstream 76907 16863156 ~ 16863355 (+)
G111909 NA non-coding upstream 129792 16779402 ~ 16810470 (+)
G111898 NA non-coding upstream 218214 16714818 ~ 16722048 (+)
G111788 LOC106576514 non-coding upstream 1070461 15849921 ~ 15869801 (+)
G111786 NA non-coding upstream 1155500 15784519 ~ 15784762 (+)
G112106 NA non-coding downstream 1267333 18214793 ~ 18215048 (+)
G112181 NA non-coding downstream 1746418 18693878 ~ 18694311 (+)
G112182 NA non-coding downstream 1747699 18695159 ~ 18745217 (+)
G112207 NA non-coding downstream 1953479 18900939 ~ 18903543 (+)
G112233 NA non-coding downstream 2148168 19095628 ~ 19100398 (+)
AMCG00006672 NA other upstream 3000787 13933666 ~ 13939475 (+)
G111197 NA other upstream 3896814 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 4288447 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 4616984 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 7371986 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 3990037 20937497 ~ 20944977 (+)
G112567 NA other downstream 4100876 21048336 ~ 21049038 (+)
G112600 NA other downstream 4195405 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 4317793 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 4670172 21617632 ~ 21622508 (+)

Expression


Co-expression Network