AMCG00006732 (LOC108413201)


Basic Information

Item Value
gene id AMCG00006732
gene name LOC108413201
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 16954888 ~ 17022710 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006732
ACAATCACAGAGTCcagtattaaaacacaaacagcaactACAGATGTGCTTTTTAGTTGGAGTCTTGTGAATGATGAAATCAAAGTGActataaaactgaataattattCATGGAGAGTACcaagaaatcaaaatacatatcAAGTAACTGATTTAAAACCTGGCACCATCTACAATTTTTCATTGGAATTTAAGAGTCAAATCCAAAATCTCAATATCAATGTGACACAAGAACTAAATATTCTCCTTGAAACAGCTTTATGCCCTCAAGGTTGGGTGTCTTATGAAGGAAACTGCTATAAATCTTGGACAAACAGCAAACAATGGATTCATGCTCAGCAGTCCTGTGAATTGTCCATGCCAGGATCTCACCTTGTCGATATCGAAACTGAGGAAGAGCTCCAGTTTCTATCATCGTACCTGTGGAATCTGAATCATATGGTCATGCTGTGGACCGGGCTCAATGACAGACAGaaGGAGGGAGAGCTTCGCTGGTCTGATGGATCTGTCTATAATCTGAAGAATATCGTGACATCACCACTGCCTAATCTGCCCCTTAATGAGACCAACTGCTTTGCTATGCAAATGAATGCCACCGGATCCAACTACTTCTTCACAGGATTCTTCTGTTACATCCCATTACCATATCTTTGCcagtataaatTTCCATCATTGCCtctacattttgaatttgagcTGGAGGATGTAAAGGAGAAGGAGGCCTGGTTCAGCTGGAGTGATTTAGAGAACTGGCTGAAACCAAAAGACACAGCAGAGATGTATATTGAGTATCAAACAGAGGGTTCAAGAGACAAACTGCACGCCGGGTTCCCTCTCAACGTGACAAGACTGGTCATTTCCAGACTGTCGCCTGGCCATGTGTACCTGtttgcatttaaagtaaaacaCCCTGGTGGTGCTTTGCTAACACTTGGTCCTGTTCTTAAAGTTCAGACAATGAAGAAAGTAACCGCCAAGGAGATTCCCTTGTACTGGACTGCTCCTGATAACTCCCAGAATGCAACATTTGATCATTATCTGATCAGCTGTCTGGATATCGTTACCAAAACACTAAACACCTTGGTTgtggaaaactacaaaacatcATCAGTTGTATCCAACCTCAGACCCTATCACCCTTACAGCATCACTGTACGGACAGTTACAGTGCTCGGCTCAGCAAGCTGTGTGGATTCACCTCTATCTGTCATAACAGGCATTTTAAAACAAGCAACTGTGAGTCCACCCAGCAGTGTTTATGTAAACCCAGAGGATGTGGGAGTAAGGAATGTAACAGTACACTGGGAATCGGCACAGGAAGAGGAGATTGATGAGTATTATATCCTAGTGAGATCAGTCACTGTTGGAGGTGACGTGAAAAACTACTGGGTAAACAGCTcaaactgttttgaaattaGCATGCTTACTCCTGGCATGACGTATGAGATAGGGGTGGCGGCAGTTAAGCATGGAAACATGAGTGAGATGAAGACTGTCCTACAGACTTTAAagcCTGAACGAGTTCAGATAGTTGTTCCATATGAACTGAACACTCATTCTGTGGTGCTGTATGTCCAAAAGCCTCATGCTGGTGTCTTTGATGGAATAAGTGTTACATACAGAGGTGGGAGTAACAGAAAATCCCTCTTGAAGGGTGAAGATAAGATTACCATTGAAAATCTCACCCCCGGAACTGAATATGAGTTTTCTGTGTACGCCACGAGTGGCAGTATGGCCAGTACGGCCTACCAAGTCCCAACTGTGAAAACCTGTCTGGCTCCACCAACTAATGTCCGTGAAGGCAACGTTTCAGAAACCTCAGTAGAGATTGTGTGGAGTGAGGCCGAAGGGAGCCATCAGAACTATGAAGTTATCTGTATTGACTGTGGCTCCATGTTCATGGTTCAAAAGGTCAAAGAGGGAAGGGGAGTTTTTACACATCTGGTTCCTGGGAAGATGTATAATTTTTCCATTCGAACCGAAAAGGAAAACTTCAAGGACAGCACTCAGctcAGCTATGGTTTGTCAACAAGGCCTGCTGGGATATGTTCTCTGTCCCTGACATACGTTAACAAATCAACTGTTGAAATAACGTGGAAATCGAGTCCTGGGAAATTTGACTATTACAAACTCGGCATTCTGAACACTTCCTTTTTTCATGAAGTAAACATTTCTGTAGAAAGCCTACATTACACACTTTCAGGCCTAGTGCCTGGGAACATCTACAACATTACAGTGGAGAGAGTCAGGGAAGGGATCTCTGGGATGGCTGCGTTCGTGACTGTGGTCACAGAACCTGAAAGTCCACAGGAAGTCCAGGTCACCAATATCTCTTCCGATGGCTTTTCCCTGCGCTGGAGTGCGCCACATGGACGTGTGGACAGATACCAAGTGGACCTCACTCCCGAAGAAGGCATTGTTACCATCTTTAATCTTGGCAGTGGGGAATCTCAGgcTAGTATTACCAGCGCCAAACCCGGGCAGACCTACACAGTTAACATCTCAGCAGTTTCATCCTCAGTGTTCAGCAGCCCTGTTAGTAAAATCGTTGCAACAATTGAAACAATTCCAAGTGCTCCCTTCAATCTCGAAGGGGAAAGGGTTGGCTCTACAGGGATCCTGCTGTCCTGGACTGTGCCACTACACCCCAATGGAAAGATTCTGTCCTACGCAATAAAGTACAAAGAAGTCTGCCCATGGCCCGACTCGGATTTTACTCAAGTGTTAACAATCTCTGACATTCCAGAATTTCTTCTCAACACTCTAACTCCTGGATCCACCTATAATATAAAGGTAGCAGCTGAGAACAACGCAGGCATCGGACTTTTCAGCAACTCGCTTTACTTCAAAACAGCCGAAAGTCCTCCTGGCCTTGTTACAAATATCACAGCCTTTGCATACAATCACTCAACTGTAAAGGTTAACTGGTTTCTACCCAAGCGAACAAACGGGCTTATTATTAAGTTTTCAATCAAAGTGAAACATGCAAGAAATGGACAGACTGTAAGAAGCTGGGAAGTCAATGCTGAGGACATCATGAAAGGCTCTTTACCTCACTGTAATGATGCGGCCGAAATCCTGTCCAGGAGCACTCCCAGCCCCTCGGTGTCTTCTCTCCTGACCTCTGCCTCTTCCCCGTCCACCATGCTCTCGGCCATCCCATCCTCATCCTCCTGGGTCAAGCCCATCAGCGTGGTGGTGGACCAGCTGAAATCGTACACGGCCTATGTGTTCGAAGTGTCAGCATTCACCAGTGACGGCGAGGGACAGATTGCCAGCTACATGGTCCGCATGCCAGAATCAGcTCCTGAAGACCCACCACAAAACCTTTCGGTGTGGAATATCACGTCAAAGTCTTTCAGTGTGACTTGGGATCCTCCAACCATTGTCACGGGACGGTTCACCTACGTCATTGAGCTGTATGGGCCTTCGGGGTATATCTTTGAGAACAACACCAGcgatttcaaattaatgtattttggtcTGACGCCTTATACAACGTATACAGTGAGTGTTCGTGCAAAATCTGCTGGAGCACTGGGGCCAAACGCTAATTCAACTGTGTTAACTCCAGCAGAAGCTCCCAGTGCTGTGATTGAGCTGAAGGCAACAGTCCTTGATTCAACATCTGTGAAGCTGTCATGGAAAAGTCCACATCATCCGAATGGAATAATAACCCAGTACAAGATTGTGGTTTcgacaaaaacagaaattgtgcAAACCATCACTCTCAGAGGAAAAGTAAAGGATTTGAACGAGACGACATTAGACGGGGATGGTATGTTTGCGCCACCCTCTGTGAATGAAACCTTGCGTCTGTCCAACCCCACTGAAGGCACGTCTGACTTCAGTCCCTCACCCTCCTCTCCGCCTTCTCCGGTCACACCCTCCTTTGCTTTATCTGCTAAAATACCTCTCTTCACCAACCTGCCCCGCACCACTCCTGACACCGCTGAGCCGAGCACGGTTTCACTCGTCACACAAGCTCCTTTAACATCAGCACCACCTCACACCTCCTCACCCATGGGAACGTCAAGCTCAGCGGTGTCTAACACGGCCTATTCACTGCCCCTCACCGCGTCTGTCAGCGCTCTGCCACCTGGGGGAAACAGGGCTTCCAGACAGGCACGCTTCACCCTCACGTCTTCATCTGGACCTTCATCTGTAGAAACTCTTACCCTGGCGGAGGGGACCATGGGCGTCTCTGCCTTACAGAATAGTCCAACACTCTCTCGTGTCTCGGCATGGGCTGGTGTCTCTACAGATGTACCAACAGATAAAGCTATAAACATTGAAGTGCCAGATATCTCTGCCGATCAGCTATCGTATGTTGTTAAGAACCTCATTCCTTTCACCGAATACACCTTCAGCGTGTCGGCCTCCACCGCTGTGGGTGAGGGCCCAGCCGCCGGCGTCGCAGAGAAAACACGGGAGCAGGTGCCAAGCTCTGTTGAAAACGTTTACTATCAGAACATCAGTTCTACCTCTATTCTGGTGTCTTGGGATCCACCCAGCAATCCCAATGGCAGGATCACTCATTTCACCGTATATGGAATGGATTTACGAACTAAAGAAGCTTTCCAAAAAGTCACGAATGAGACAAGCATTATCCTTTCAGgtttgaaaaaatacacagagtACAAACTGCGTGTTGCCGCATCTACAGTTGTGGGAGAGAGCTCTCTTTCGGAGGAAGATGACATATTTGTAATAACACTTGAGGatgAACCAGAATCACCTCCTGTGAACCTCACTGTTCAGGATGTTACTGCGTCTACAGCCACAATCAGCTGGTCACCCCCAGCACAGCCAAATGGAATTCTTCTTTATTACAAAATTCTCTATGAAAATTCAACTACCTGGTCCACAATGAACAGCTCGAAACCTCACATCCAGCTCACAAATCTGAAGCCTTTCTCTTCCTATAATGTTACTGTCAGAGCTTACACCAAGTATGGATACGGGAACCAAACATCCCCAGCCTTAAATGTGTTGACTGAAGAAGACGCTCCTGGCAGTCCACCATTTAATTTGACATATGAGAGTATTAGTTCCACAGAGATAACAGTTTCATGGCTATCCCCACTGCATGCCAATGGCATTATATTATCTTACATTGTCCAATACTGGAACGCGTCCCACTCCATGAACATCAGCAGCACTAGCACCAAAGTCACCATTTCCAACCTGAAGAAATATTCCCAGTACTGGCTATATGTGGCGGCTAACACCAAGTTTGGAAGTGGAAACCAGACCAGTGATGTTCTGAATGTCGTCACAGTCTCCAAATCTGAAACCGATGCTACGAATTCATCCTACTCCACGATAATTGATGGCCTGGCTATATTCAGCCAGTATAATCTATGGATGAGTGCCAGTACTGCCCTAGGAGATGGAAATATGACAAGTGACATAATATATGTGTACACTGAGGAGGATGTTCCCGGTGGACCAGTGCACAATCTCATTGCCCACAATGTTTCTTCCACGGCTATCAGTGTGAGTTGGCTGCCACCAGATTTGCCGAATGGTCGAGTGTTTTACAACGTCTCCCTGAGGGAAGCTCAGACGAACATCCCAGTCTCAGAGTTCACAACCAGTGAAACAACCATACTGATTCAAAATCTACAGAAATATACTGACTACATTTTACGCGTTACGGCAGCCACGGCCGCAGGCTTCTCTGAAAACAGCACCACGACATTATACCTCAGGACCGATGAAGACCGATCACCACCTTTGATTGTCTCTACCAGAAACCTCACGTCATCTTCTATCGAGTTGTCCTGGCTGCCCCCCACTCAGTCAAATGGAATTATCTTAAACTACTCTGTCTTGGTGAAGGGCCCTACGAAGTCTAAaatttcatttgtttcaaaTACCAGCCTGATTTTGTCTGATCTGAAGCCATTCGCATCATACAACTTGTCGATCTCTGCGGTGAACCGCAGAGGCATGGGCCCTGCTGCCGTGCTGCTGCTGTACACCGAGGAAGCAGAACCGACGTCTCCACCACAAGACCTGAGGATGTTTAACCACACTGCAGACACTGTGTGGCTCACGTGGAGTCCGAGTCCCGAACCGAATGGAGTTGTGCAGTTCTACAGTTTCAGGATCTTTGAAAACAGCAGCCAGACATTGTCATATCAGAATTCCTCAGGATTAATAACAGAACTACAACTAACTGGATTTAAACCTCATAGCGTCTACCAAATCAGTGTCTCTGCCTTCACCAGAGTGGGAAATGGAGATCTTTTCAGCAACACTGTCATTTTTACAACAAATGAATCAGTTTCAGATATTGTTCAGAATCTTAATTGCACTGGATTAAGCTGGAAATCAGTCTATATCCAGTGGGATCCCCCAGCTACTCCAAATGGCGTCATCAGTGAATATTTTGTGTGGTTCGGAAACGAGACACGCAAATTCAAGCCATCTGATCGCAAAAACACCATTGGAGGGCTGCTAGCAAACACGACATACTCCTTTCACGTGATCGCTGTCAATTCTGCTGGCCGGGGGACAGAGCAGACTTGCCTGGCCACAACATTTCCAGAATCAGTTCCAAGTGCTCCAATACACCTAAACATAACAAAGATTCAGTCAATGAGTGTGACCTTATGGTGGACTCGTCCAGACAACGTTCCCGGCTACCTGCAGGACTACCAGATTGTGGTGCAACTTCTGTCCGTGGAGTGTGACGATTGGGTCGCCTCTGATTGTATAGAGACCGAAGTGGTGGAGTACACAAATGACACCAACAGTATTGTGGAGGCCACGGTCTATTCCCTTCTGAAATACAGACAATACAGGTTTAGTGTTGCAGCCCGGACAAATGCCGGATATGGCATTGCTACAGAGTGGATATTCGCCAAAACACTGCCAGGCAatccCGACGCTCCTCCTCAAAACGTTTTTGTCATTCCCACTTCAGACAGTATTAAAATCACCTGGGAGGCTCCAGAGGTGGTTACAGGACCTACATTTTATCTTATAGATGTCACTTCAGtacaaaatgacattttcaattGGACTTTGGTGAGGAGAAATGAAGAGATAAAGAGTGTTGTGGTGTCAAATTTAACGGCTTTTACAAGCTATTCTGTAATAGTGACAGCCTTCACTGGTGATGTGAAAGAGGCTCGGCTATATGGCAAAGCTGCTAATCCTGTGTACGTCCGAACACTGGAAGATGAACCTAAAGACCCACCCCAAAATGTGACTTTCCAAAAAATACCAGATATGGTGACCAGAGTTTACGTGACTTTTTCACCCCCGGTCGAGCCGAATGGGAATATCACTGCTTACCGGGCTCAGGTTTACAGAGAAGGGAATCTGGATTTTGAAATCGAAAGCCTCTcagttactgaaaataaaaaccagaCATTGACTGCTGTCATAGACGGTTTAAAGGGAGGAAACACCTACAGCATCAGGATTGCTGCTGTCAATGGAGCTGGTTCAGGTCCCAGTACAGAAGTACAAATTACCATGGAAATTAAAGCACCACCTGTGCCCAGCAGAAGGCCAGTGCCAGCCTTTGACAGGAGTGGAGCTGTTATGGTGACGTCAAGAACCATTACCATCAAGATGCCGGTCTGCTTCTTCTCTGATGATAATGGGCCGATTGACAAAATACAGGTTATTGTTGCAGAAGCTGAAGTATTAGAAAGTGAGAATTTAACCAATTGGAAAGACGCTTTCTACAACAAACCAAGGCCGTACTTTACTGACGAAGGCTTCAGAAACTCTTTATGCCCAGAAGACATGAGGAGACGAGTTACTCCCCTGGACACTTATGTGATCGGGGCTGAAGAAGATTGCATGTCACAAGAGAAGGACAACAAGCTTTGTAATGGTCCTTTAAAGCCTAAAAGGCAATATGTattCAAATTCAGAGGAACAAATTCCAAAGGACAATACACTGATTCGCTGTATTCAGACCGAGTTAAAACATCAGtgGACCGTTTGTTGGATCGAGATGAGGAAATAATCATCGGTGTGATTTTGTCTGTACTATTAGCAGTCTTTCTGATAGTTACCATCTATACTTTTGCAAGGATCAGGCAAAAGCAGAAAGAAGGAGGAACATACTCTCCACGGGACGCCGAAATCATTGACACTAAATTCAAGCTTGACCAACTGATAGCTGTAGCAGACCTGGAACTGAAGGAAGAGAAATTAACTCGaccTGTTAACAAGAAATCATTCCTTCAACATGTTGAGGACCTGTGCAGTAATGACAACACAAAGTTTCAGGAGGAATTTTCGGAACTTCCAAAGCTCCTTCAAGACCTCGCAACATCAGACGCCGACTTACCCTGGAACAGGTCCAAGAACCGCTTCACAAACATCAAGCCCTATAACAACAACCGTGTCAAGCTTATGTCTGAAGCTGGTGTACCGGGATCCGATTACATCAATGCCAGTTATGTGTCTGGCTATCTGTGTCCCAATGAGTTCATCGCCACTCAAGGCCCATTACCAGGCACGGTGGCAGATTTTTGGAGGATGATCTGGGAAACACGAACCAGGACAATCGCCATGCTGACGCAGTGTTTCGAGAAAGGCAGAATCAGATGTCACCAGTACTGGCCTGAAGACAATAAACCAGTGACAGTGTTTGGAGACATCGTGATCACCAAACTGGCCGAAGATGTCCATCCAGACTGGACCATTCGGGTCCTCAAAGTTGAAAGGCATGGTGATTACATGGTGGTAaatcatttcaatttcacatcTTGGCCAGAGCATGGAGTGCCTGAATCCAGCACTGCACTCATCCAATTTGTTAAATTTATTCGAGCAAACAGAGCCCATGACAACACGACTATAGTGGTGCACTGCAGtgctggAGTGGGTCGCACAGGGGTGTTTATCGCTTTAGATCACCTCATACAACACGTGAGAGACCATGATTTTGTGGACATTTACGGCCTTGTTGCAGAGCTGCGCAGTGAGAGGATGTGTATGGTGCAAAACTTGGCACAGTACATGTTTCTGCATCAGAGTACTCTCGATCTCTTGTCAAGTAAAGGGAACAGTCAATCTGTTTGGTTTGTAAATTACTCCTCTCTTGAAAAGATGGACTCTTTGGATGCCATGGAAGGTGACGTGGAACTCGAGTGGGAAGAAACAAcgatgtaattattatattacatacaaTAGGATTATGTTTATAAAGCAGCTATTTTTGACTTTTGCCTTCACATGTCATGACATTGAGAAGGCTCAGAATTAAACACGCATCTATGGACACTGGGGCCAAAACGCTGTACATAGGCTTTCCCCTTGATCGTTCCCCGCTGTGCCTTTTTTTCTACCCCTAGATCGCATAAGAAAGACAATAAAGAATATGAAAATCCTTTTGCACATGAAATGATATGTATTTAAGCAAGATCTTGCACTGATAATTTAAAGTCTCTTTGTATTTCCTACTTcagataattgtattttttgtaagatAAATTAAGCCAAACTGGTATTTGTCAggattttattgcattttgtgtgtgtgtgttttgggtgaAAATAAGGGATTTCTGTTTGTAAAGTAAAGG

Function

NR:

description
PREDICTED: phosphatidylinositol phosphatase PTPRQ-like

GO: NA

KEGG:

id description
K16910 PTPRQ; receptor-type tyrosine-protein phosphatase Q

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006732 True 9560 mRNA 0.45 52 16954888 17022710

Neighbor

gene id symbol gene type direction distance location
AMCG00006731 NA coding upstream 7428 16940262 ~ 16947460 (+)
AMCG00006730 otogl,LOC107564906,LOC107736094,LOC107662850 coding upstream 14702 16903520 ~ 16940186 (+)
AMCG00006729 rps16,LOC103382554 coding upstream 53395 16898281 ~ 16901493 (+)
AMCG00006728 syt1,LOC101079537 coding upstream 256777 16695465 ~ 16698111 (+)
AMCG00006727 syt1 coding upstream 277646 16658295 ~ 16677242 (+)
AMCG00006733 myf6 coding downstream 3612 17026322 ~ 17037135 (+)
AMCG00006739 NA coding downstream 79012 17101722 ~ 17120725 (+)
AMCG00006738 NA coding downstream 114447 17137157 ~ 17143440 (+)
AMCG00006742 NA coding downstream 384319 17407029 ~ 17466135 (+)
AMCG00006744 LOC106561381,LOC108414015,LOC106573180 coding downstream 514967 17537677 ~ 17564638 (+)
G111941 NA non-coding upstream 91533 16863156 ~ 16863355 (+)
G111909 NA non-coding upstream 144418 16779402 ~ 16810470 (+)
G111898 NA non-coding upstream 232840 16714818 ~ 16722048 (+)
G111788 LOC106576514 non-coding upstream 1085087 15849921 ~ 15869801 (+)
G111786 NA non-coding upstream 1170126 15784519 ~ 15784762 (+)
G112106 NA non-coding downstream 1192083 18214793 ~ 18215048 (+)
G112181 NA non-coding downstream 1671168 18693878 ~ 18694311 (+)
G112182 NA non-coding downstream 1672449 18695159 ~ 18745217 (+)
G112207 NA non-coding downstream 1878229 18900939 ~ 18903543 (+)
G112233 NA non-coding downstream 2072918 19095628 ~ 19100398 (+)
AMCG00006672 NA other upstream 3015413 13933666 ~ 13939475 (+)
G111197 NA other upstream 3911440 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 4303073 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 4631610 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 7386612 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 3914787 20937497 ~ 20944977 (+)
G112567 NA other downstream 4025626 21048336 ~ 21049038 (+)
G112600 NA other downstream 4120155 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 4242543 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 4594922 21617632 ~ 21622508 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location