AMCG00006733 (myf6)


Basic Information

Item Value
gene id AMCG00006733
gene name myf6
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 17026322 ~ 17037135 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006733
CTGGAGCTGCCCTGCTGGTTTATATCACTTCTGTCCCACACATAGGCCGCAAAGGCGAGAGCACCATGATGGACCTTTTTGAGACCAATGCttattttttcaatgatttGCGCTACCTGGATGGGGATACGGGCCCGCTGCAGCACTTGGAAATGGCAGAGGTGTCCCCTCTGTACCAGGGGAGTGACGGGCCCCTGTCCCCGGGccaggaccaggaccaggaccaggaccaggaccaggTGACATCCGAGACGGGCTGTGACAGCAGCGGGGAAGAGCACGTCCTGGCGCCGCCGGGCCTGCAGGCGCACTGTGCGGGCCAGTGCCTCATCTGGGCTTGCAAGACCTGCAAGAGAAAGTCTGCCCCGACCGACCGCAGGAAAGCAGCCACTCTCAGGGAGAGACGGCGGCTCAAGAAGATTAATGAAGCCTTTGAAGCCTTAAAGAAAAAGACGGTGCCAAACCCCAGCCAGAGACTGCCCAAAGTGGAGATCCTGCGCAGCGCCATCAGTTACATTGAGAAGCTCCAGGACCTTCTGCACACCCTGGACCAGCAAGACGACATGCAGGACAAGGACCCATTTAGCTATAATCTCAAAGACCATCATCGCCCAGCTATGGAAATCTCAGAAAGCTGCCACTTTTCTCCATCCCAGGTCTTTTATGATAACTCCTGCATGTCTTCACCAGAGGGCTCTGACTTCGTCGACAGCTTCGACCAGAGGCTGGCCGCTCTGGGGGACCTGCAGGGCTCAGATGAAGACGAGCATGTGCGAGCCCCCAGCGGCCACCACCAAGCGGGCCACTGCCTGATGTGGGCTTGCAAAGCCTGCAAGAGGAAGTCGAGCACGGTGGACCGCAGGAAGGCAGCCACCATGCGGGAGAGGAGGAGGCTGAAGAAGGTGAACCTAGCCTTCGAGACGCTCAGGAGGTGCACTTCGGCCAACCCTAACCAGCGCCTGCCCAAGGTGGAGATCCTGCGCAATGCCATTCAGTATATCGAGAGCCTGCAGGACCTCTTGCGAGAGCAGGTGGAGAACTACTACAGCCTGCCGGGAGAGAGCAGCTCTGAGCCAGGGAGTCCCACCTCCAACTGCTCGGATGGAATGGTTGAGTGCAACAGCCCTGCTTGGTGTCGAGCAAACAACAGCTATGGCAATATGTACAATCATGATGTACAAAATGTGTACTCCAGTGAGAGGAACCCTGCCGTGTCCAGCCTCGAATGCCTGTCAAGTATCGTGGAGCGCCTTTCTGCGGCTGATCCGAGTGTCCTAGTAGGAAGAGATAGCTCTGCCCTGTCTCCATCAAGCACCGACTCCCAGCCGAGCACCCCCGGGACTCCAGCAGCACACCCGGTCTACCATGTGTTG

Function

symbol description
myf6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within skeletal muscle tissue development. Predicted to be located in nucleus. Is expressed in several structures, including Rohon-Beard neurons; adaxial cell; fin; muscle precursor cell; and musculature system. Human ortholog(s) of this gene implicated in congenital structural myopathy. Orthologous to human MYF6 (myogenic factor 6).

NR:

description
PREDICTED: myogenic factor 6

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0043282 pharyngeal muscle development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0002074 extraocular skeletal muscle development biological_process
GO:0005654 nucleoplasm cellular_component
GO:0005730 nucleolus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K18484 MYF5; myogenic factor 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006733 True 1373 mRNA 0.58 4 17026322 17037135

Neighbor

gene id symbol gene type direction distance location
AMCG00006732 LOC108413201 coding upstream 3612 16954888 ~ 17022710 (+)
AMCG00006731 NA coding upstream 78862 16940262 ~ 16947460 (+)
AMCG00006730 otogl,LOC107564906,LOC107736094,LOC107662850 coding upstream 86136 16903520 ~ 16940186 (+)
AMCG00006729 rps16,LOC103382554 coding upstream 124829 16898281 ~ 16901493 (+)
AMCG00006728 syt1,LOC101079537 coding upstream 328211 16695465 ~ 16698111 (+)
AMCG00006739 NA coding downstream 64587 17101722 ~ 17120725 (+)
AMCG00006738 NA coding downstream 100022 17137157 ~ 17143440 (+)
AMCG00006742 NA coding downstream 369894 17407029 ~ 17466135 (+)
AMCG00006744 LOC106561381,LOC108414015,LOC106573180 coding downstream 500542 17537677 ~ 17564638 (+)
AMCG00006749 NA coding downstream 780680 17817815 ~ 17855390 (+)
G111941 NA non-coding upstream 162967 16863156 ~ 16863355 (+)
G111909 NA non-coding upstream 215852 16779402 ~ 16810470 (+)
G111898 NA non-coding upstream 304274 16714818 ~ 16722048 (+)
G111788 LOC106576514 non-coding upstream 1156521 15849921 ~ 15869801 (+)
G111786 NA non-coding upstream 1241560 15784519 ~ 15784762 (+)
G112106 NA non-coding downstream 1177658 18214793 ~ 18215048 (+)
G112181 NA non-coding downstream 1656743 18693878 ~ 18694311 (+)
G112182 NA non-coding downstream 1658024 18695159 ~ 18745217 (+)
G112207 NA non-coding downstream 1863804 18900939 ~ 18903543 (+)
G112233 NA non-coding downstream 2058493 19095628 ~ 19100398 (+)
AMCG00006672 NA other upstream 3086847 13933666 ~ 13939475 (+)
G111197 NA other upstream 3982874 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 4374507 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 4703044 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 7458046 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 3900362 20937497 ~ 20944977 (+)
G112567 NA other downstream 4011201 21048336 ~ 21049038 (+)
G112600 NA other downstream 4105730 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 4228118 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 4580497 21617632 ~ 21622508 (+)

Expression


Co-expression Network