AMCG00006734


Basic Information

Item Value
gene id AMCG00006734
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 16716275 ~ 16783557 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006734
ATGGCGACGGGGGGGTTCAGATCGAGCACCACGACGGACTTTCTGGAGGAGTGGAAAGCCAAAAGGGAGAAGATGAGGGCTAAGATCCAGGGAGAGGTGGCGGCTGCCGGGGGGAGCGGCAACAGCAGCAACCCGGCCGCGTCTCCCTCACTGGGGCCGGGCAGCGAGAGCCGGAGTTTCCCCGCCGCCAACAGCGAGCTGCACAACCACGGCGGCGCCTCCTTTAACTGCGCCGCTTCACACCCGGGGAGCCGatcctccacctccacctccaccgGCCCGAGGAGGCCAGAGGAGGACCCGCACCTGCCCACCGCCGGCCGGGCAGCCGATCCCCCGGGGAGCAGCCTGAAGAAGCCCCCGGTGGCGGAGAAGCTGCCCGCCGGCGCCCCGCAGTCGGACTGCAGCGGGGAAGTGTGTGTCGAGAGCGAGAAGGAGGGCTCCCCGTCCCCGGCGGCGGGCTCCGGCAAAGCCAAGGAGAAGGGCAAGAGCTCGGGCCCCAGCGCCAGGAAGGGCAAGGGGCAGATCGAGAAGAGGAAGCTGCGGGAGAAGCGCAGATCCACAGGTGTCGTCAGCATACCGTCCAACGAGGTGAGTGAGGCCCGGGGTCTGGCAGCGGTGCGGCTGTCAGGTGGCGAGGCACGTCAGCTGCCCGGGCATGGGGCGAGTTGTTTCACTGCCTCGGCAGGAAAGGACAAGTACCCAGAGAACAAAAGTCTCGATGAGCTGGAGGATGACGACGGCACGCAGAAGGACCGGAAGAGGGAAGATGCCATCACACAGCAGAACACGGTGCAGAATGAAGCCCTGGCCTCTGACCCCAGCACTGCTCACCTAATACAGCTGGAGAATGCCAAGATAAcGTCACAGCGAAAGACACATCTAAATCTGTATCAAGCCGATATAAAAGGTCCAGCATCCGAGGAGGAGGCCACTGGGAACAGTAGGTACCCAGGGCGACCGGAGCGCTCAGGCTATGGGCGTCATGGCAGGGATGCCAACGCACTGGGCTCTGGAGCCCTGGAGAGGAGAATCGAGGAATTGGAAAGGGAACTTGCTAAAGAGAGGCAGGAAAACACACGAATGTTGAGAGCCCATCAAGACAAAGATGAAGTGATAGGCAAGCTGAGGGAAGAGATTGACCTACTAAATAGGGATCTTGATGACATAGAGGATGAAAATGAACAACTGAAGCAAGAAAATAAGACCCTCCTGAAGGTTGTAGGTCAGCTGACCAGGTAG

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006734 True 1242 mRNA 0.61 9 16716275 16783557

Neighbor

gene id symbol gene type direction distance location
AMCG00006723 NA coding downstream 654465 16051366 ~ 16061810 (-)
AMCG00006722 csrp2,LOC107383140,LOC107087065 coding downstream 676887 16032419 ~ 16039388 (-)
AMCG00006720 osbpl8 coding downstream 788134 15899543 ~ 15928141 (-)
AMCG00006716 nap1l1,LOC106609764 coding downstream 846338 15849921 ~ 15869937 (-)
AMCG00006714 NA coding downstream 867498 15846231 ~ 15848777 (-)
AMCG00006735 ppp1r12a,LOC107591124 coding upstream 17289 16800846 ~ 16835040 (-)
AMCG00006736 ppp1r12a coding upstream 77550 16861107 ~ 16861777 (-)
AMCG00006737 lin7a coding upstream 276806 17060363 ~ 17072397 (-)
AMCG00006740 NA coding upstream 361142 17144699 ~ 17271736 (-)
AMCG00006741 ppfia2 coding upstream 543072 17326629 ~ 17327076 (-)
G111765 NA non-coding downstream 973560 15742446 ~ 15742715 (-)
G111759 NA non-coding downstream 986742 15728613 ~ 15729533 (-)
G111736 NA non-coding downstream 1056863 15657998 ~ 15659412 (-)
G111730 NA non-coding downstream 1158074 15557943 ~ 15558201 (-)
G111728 NA non-coding downstream 1178439 15537476 ~ 15537836 (-)
G111940 NA non-coding upstream 79120 16862677 ~ 16862967 (-)
G111945 rs16,rps16,LOC103382554 non-coding upstream 114862 16898419 ~ 16901537 (-)
G112020 NA non-coding upstream 325420 17108977 ~ 17327586 (-)
G112024 LOC103376870 non-coding upstream 344760 17128317 ~ 17135516 (-)
G112140 NA non-coding upstream 1615706 18399263 ~ 18408777 (-)
AMCG00006719 NA other downstream 819406 15881130 ~ 15896869 (-)
G111767 LOC107575789 other downstream 963040 15752821 ~ 15753235 (-)
G111621 NA other downstream 1962305 14712017 ~ 14753970 (-)
G111489 NA other downstream 2351853 14360228 ~ 14364422 (-)
AMCG00006663 hmga2 other downstream 3213047 13455432 ~ 13503228 (-)
G112059 NA other upstream 849334 17632891 ~ 17633445 (-)
AMCG00006754 NA other upstream 1555713 18339270 ~ 18366562 (-)
AMCG00006773 tmem243b,tmem243 other upstream 2839598 19623155 ~ 19631895 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other upstream 2849536 19633093 ~ 19635925 (-)
G112420 NA other upstream 3452299 20235856 ~ 20236206 (-)

Expression


Co-expression Network