AMCG00006735 (ppp1r12a,LOC107591124)


Basic Information

Item Value
gene id AMCG00006735
gene name ppp1r12a,LOC107591124
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 16800846 ~ 16835040 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006735
GGTCTTCTCTTTGTCTTGCAGGCCTGCATAGATGACAATGTGGATATGGTGCAGTTTCTGGTCGAACATGGAGCCAATATCAACCAGCCTGATAACGAAGGCTGGATACCACTGCATGCAGCTGCTTCCTGTGGATATCTTGATATAGCTGAATATTTAATTAGTCAAGGAGCTAATGTTGGAGTTGTCAACAGTGAAGGGGAAACTCCGCTTGACATTGCAGAAGAAGAAGCAATGGAGGAACTTCTGCAAAATGAAGTGAATCGTCAAGGAGTTGACATTGAAGCGGCtcggaaggaggaggagagaattATGCTGCGTGACGCGCGGCAGTGGTTGAATAGCGGCCAGATCAACGATGTCCGACATGCCAAATCTGGGGGTACAGCATTGCATGTTGCGGCTGCTAAAGGCTATGCAGAGGTTTTAAAGCTTTTAATCCAGGCGGGGTATGATGTAAACATTAAAGACTATGATGGTTGGACACCACTCCACGCTGCTGCCCATTGGGGTAAAGAGGAAGCCTGCCGTATTCTAgGCCAAACAGCCGTTGATGTAGCAGATGAAGATGTCCTTGGTTATCTAGAAGAAttgcaaaagaaacaaaatctgCTTTTGAGTGAGAAACGGGATAAGAAGTCTCCTTTGATTGAGACGACGACAACAATGGACAATAACCAATCACTTAAACCACTCAAGAACAAAGAGACGCTGTTGATCGAGCAGGAGAAGCCTGTACCCCGCATCGAGTCTCTGGAGCAGGAGAAGGCcgacgaggaggaggaagggaagaAGGACGAGTCCAGCTGCtccagtgaggaggaggaggaggaggactcGGAATCTGAAACTGAAGCAGACAAGAGCAAGACTTCTGCCCCTGTAAATAACACGAACAGTACCGCAACATCGCCAACCAGCGTGACTGTATCGTCCCCAACAATCCCCACTAACCAGGTGACCCCAACCTCGCCTGTCAAGAAGATTGCTCCCCCTGCTGGTAAAGTCTCCCCAAAAGATGATGATCGGAAAGATGAGTCCCCCTCTTCCTGGCGGTCTGGCCTTCGGAAAACGGGCAGCTACGGGGCGCTGGCAGAGATCTCTGCTGCTAAGGAGGCACAGAAAGAGAAGGACACCACTGGGGTGATGCGCTCTGCCTCCAGTCCAAGGCTGTCTTCCACACTGgacaacaaagacaaagaaaagGAGAAAGATAAAGGAACCCGGTTTGCGTACGTGGCTCCTACAATACCATCCAGACGATTTGCCAGTACTTCAGATATTGACGAAAAGGAAAACAGGGACTCTGCTGCTAGTCTGGTGCGTAGTGGGTCTTACACAAGGAGGAGGTGGGACGATGACCTGAAGAACAATGAAGGAACTGCTTCCCAGAACAAAACGCCAAGCTATCAGCGAAGTACGTCCTACTCGCTAGCAATAGGCAGAAGTAGCAGTGTGAGAGATGTACCAGCTAAGTCTTCATCTGCCATCAGCTTGGATCCTAATAACACTAAACCTTGGCAGTCACCTTCATCTCAGTACCAGTCTTGCAGCATTTATAGAAGTGGCTCCTTTGGCCGGCGCCAGGATGATATGTTCAGTTCTAGTGTCGCATCCACCACCTCATCCGTTACCTCACCCACTGGCCACCCGAGGAGTCTGCTCTCAAGCGCAAGCACTACGACCAAGACCGCGACGACGACGACTCCATCGAGCTTCTCAAGCAGAAAGGGAGAAAGACTCTGGACCAACAGCAGTGGCCGTCATACCAACTATTGTAAATACTTCAGCTACTACTACATCAACCACATCCACCACTGGCACCATCGTACCTCACTCCTGTCCGGGATGAAGAATCAGAGTCTCAGAGGAAAGCCAGATCTAGACAAGCTAGGCAGTCGAGAAGGTCCACTCAGGCAAGGTGTGACCCTCACTGATCTTCAAGAAGCGGAAAAGACTATTGGCCGGAGCCGTCCAACTCCAATTCGAACTCGggaagaggagaaagaagaaaaggaaaagcaggACAAAGAGAAacaggaggagaagagagaatTGGACCCTCGAGATGATGACTACCGGTCGAAATTCCGGAGCTTTGAGGAGACTTACCAGCGCTATCGGCCATCCAGTACTTCCACAGCCACATCATCCTCCACTAGCTCTCTCTATTCGTCTAGTTCACTCAACCGGCCCAACAGTCTGTCTGGCATCACCTCGGTATACCCCAGCTACAGCAGGACTTTGTCCAGGGATACTGAGAAGGAATCTGATAAGAAGGAGGACGAGAAGGACGGAGAAGACAAGTCCGAGGACAAGTCCCAGCCCAAATCCATACGAGACAGACGGCGGCCCAGGGAGAAGCGACGGTCCACCGGAGTCTCCTTCTGGACCCAAGATAGTGATGAAAACGATCAAGAACAGCAGTCCGATTCTGAAGAAGGAACTGACCGTAATGAGCCCCAGAGCGACAGGCTTTCAAGGAATGACACTGGGTTGTCTAGCTCTTCTGGTGATCGCTATGACCACATCATTGGCCGCAGCAGAAAGCCCTACTCGAGCAGATTGGATAGAGAAGATTCAACCGATTACAAAAAGCTTTATGAACAGATTCTAGCTGAAAATGAGAAACTGAAGGCACAATTACGCGATACAGACATGGAGTTAACAGACTTGAAATTACAGCTTGAAAAGGCAACGCAGCGACAGGAGCGGTTTGCTGACAGGTCACAGTTGGAAATGGAGAAAAGGGAAAGAAGAGCTCTAGAAAGGAGGATATCTGAGATGGAGGAAGAACTCAAGAACCTTCATCAAGTAAAGCAGATTCAGACTCTGAGGCAATTAAATGAGAGATTGATCGCAGAGAATAGGGCCCTGACCAGAGTGGTGGCAAAGCTTTCAGAGTCCTGTAGCCAGCTACAGGCTGTGGACTTGTAGACCCCCTCCCATTCTTCATTACCTCTGCCCACCCATAGCCAGATGCTACCAGACTTGAAAGCAGATAACCAGAGACTAAAGGATGAAAATGGAGCCTTGATTAGAGTCATAAGCAAACTTTCAAAGTAGACCAGGTCCTGCAGCAGCAACTAATGGTATtgcacattaatattaattgcaACAGACATCAGCTACCAGGTTCCTCCTTCCATCTGCAATCACATTTGCTCTACCCCTCCACCAGCCACACCAtcctttttcattcattaaaaccCTACTAGGTGATTTTACTTAACCCTGCAGCTGCTGTCAAGACGGAACGAGTTTACAGAAATCAAACCATGATGAACGAGCGAAAGCGATTTGGCCAGGGACGCCTCGGAATATTTAACCAATAAGCCTTAGCTGTACATAAACACATGCATCGAGCTCTCAGCTGTCACAGAATAAGTTATTCAAGCGACATTTATTGTGCCACAGcctatgtgtttttgttttttgttttttttccccgtttttgtttgtttttgttcctacACCTGCTTAGaagtgttgtgtgctgtgcGATGTTCTTCTAACCACCCATGTGCCAGAGATATTTCCCTAGAAGCTCAGTGTTCACTCGGCtgtcccatttttttttttttttttttttttgaagagaCCCAAGATCCCAACCAGAATAATGGAAGTTATTGCggttttttattcaatttttaagaaaaggaaataaaaattcTCGCCATATTGAATAGGTGGACTTGGTGAAACTTAGGCTTTCACTGTATGtgcaatatgcatttatttcttaaacaaatGCTTTAATGAGTCCATTGTAAGTAGAATTATTTTCACCTCTTCTGCCTTCATTGTTcaccccctttttttttctccttttctttgtattgtaGTTGTTGGATTATACTGTGTATTCTTCACTTCATTTTAGCCGGTACTGAGTGaagctgtatatatgtattgtttgagTTTCAGACCACCACATGGCATGCATTATGCTTCCTGATGACAAACCAACCTGTTACTATTAAAATCTACAACTACagaaaaagtgtgttttaacgattttcatttattttgtagtaaGTACATTGGATGCAGTAGAGCCTCTCTCGTTAAGGAGATGGCAAGTTGAATtcagtgctgttgttttttcagttttttttttctttgtcatttttttaagtgttcaCAGTAATAAATGTGAgattaagaataatataattgcTTCACTACATTTCACACCTTgtatacagtatctttggaAGTGCTgtcccccccccttttttaacTGTAGTACTAGCCAAGATATTGTCACTAAAATCTTCGGTATTTCTAACCAGTCCTTTTACAATGTCTGTATGCACTGTTAATGCCATGTGAAGAGTCATGTAAAGTTTTGAGACGACCATTATGTCAAATAAAGACCGGAAATTGGAACATTTATTATATGCATTTCAGTGGCCTTTTAAATTTACTATAGTGAATGTTGCTATGGTTGACTGTCaggatttctttttaattattattattattattattattattattatttaccatcATGTAAAATAAGTGACTCCATACTGGCACACACTGCTGTGACGTTAAACCACTGAAGAGTTCAAAGCATTCAAaccattcaaataaattgtatattgtaaagCTTGCAGTAGCTATTGTATCCTCATTGATTGTATACTTAAATGTGAATTTATACcccttcataaaaaaaaaaagaaaaaagaaaaacaggtcaTTGtgttctattaaaaaatattttagtttggaAACCTGGGCGACTGTCCCTGTATTTTGTGGTGATTGGTTTTGTGTCGGTGTGAGGCCGTGCTCATACTACCAAGCTCAGGATTCTTGACTTTAAACACCTAAACATGCTACAGTGCGTCTGATTGTTCCTGTCGTGGATTGATTGGTATGATTGGTTTATTTGAGAGCGTAGAATTGGAGTTTGAATGCTAGTGAACAATGGGTTAAGTGGTTCCTCGGACCGTGAGACTGTTAACTCAACCCTTTGCAAATTGTGTTAGTTTTGGGTGCATGTGCAGATTTAACCTAGCTACGCATTTCtaatagtgttttatatttggtttatttattgttaaacaaaaaaagaaaaaaaaaatatatgaagtgGCTGCAGCGCTATAATTTTATTGGTAGTACCGAGCAGACCTTGTATCAGCATGAAACTAGTCGCTGAAACTATTTTGAggagggaaaacaaatgtattttgacatatacaaataaagatgaaataaagtt

Function

symbol description
ppp1r12a Enables protein heterodimerization activity. Acts upstream of or within several processes, including actin filament bundle organization; convergent extension involved in axis elongation; and nervous system development. Located in cytoplasm. Is expressed in several structures, including central nervous system; digestive system; endoderm; mesoderm; and myotome. Orthologous to several human genes including PPP1R12A (protein phosphatase 1 regulatory subunit 12A).

NR:

description
PREDICTED: protein phosphatase 1 regulatory subunit 12A isoform X2

GO:

id name namespace
GO:0035507 regulation of myosin-light-chain-phosphatase activity biological_process
GO:0030155 regulation of cell adhesion biological_process
GO:0051017 actin filament bundle assembly biological_process
GO:0001889 liver development biological_process
GO:0072357 PTW/PP1 phosphatase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0071889 14-3-3 protein binding molecular_function
GO:0019208 phosphatase regulator activity molecular_function

KEGG:

id description
K06270 PPP1R12A, MYPT1; protein phosphatase 1 regulatory subunit 12A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006735 True 5239 mRNA 0.44 26 16800846 16835040

Neighbor

gene id symbol gene type direction distance location
AMCG00006734 NA coding downstream 17289 16716275 ~ 16783557 (-)
AMCG00006723 NA coding downstream 739036 16051366 ~ 16061810 (-)
AMCG00006722 csrp2,LOC107383140,LOC107087065 coding downstream 761458 16032419 ~ 16039388 (-)
AMCG00006720 osbpl8 coding downstream 872705 15899543 ~ 15928141 (-)
AMCG00006716 nap1l1,LOC106609764 coding downstream 930909 15849921 ~ 15869937 (-)
AMCG00006736 ppp1r12a coding upstream 26067 16861107 ~ 16861777 (-)
AMCG00006737 lin7a coding upstream 225323 17060363 ~ 17072397 (-)
AMCG00006740 NA coding upstream 309659 17144699 ~ 17271736 (-)
AMCG00006741 ppfia2 coding upstream 491589 17326629 ~ 17327076 (-)
AMCG00006743 NA coding upstream 568586 17403626 ~ 17406828 (-)
G111765 NA non-coding downstream 1058131 15742446 ~ 15742715 (-)
G111759 NA non-coding downstream 1071313 15728613 ~ 15729533 (-)
G111736 NA non-coding downstream 1141434 15657998 ~ 15659412 (-)
G111730 NA non-coding downstream 1242645 15557943 ~ 15558201 (-)
G111728 NA non-coding downstream 1263010 15537476 ~ 15537836 (-)
G111940 NA non-coding upstream 27637 16862677 ~ 16862967 (-)
G111945 rs16,rps16,LOC103382554 non-coding upstream 63379 16898419 ~ 16901537 (-)
G112020 NA non-coding upstream 273937 17108977 ~ 17327586 (-)
G112024 LOC103376870 non-coding upstream 293277 17128317 ~ 17135516 (-)
G112140 NA non-coding upstream 1564223 18399263 ~ 18408777 (-)
AMCG00006719 NA other downstream 903977 15881130 ~ 15896869 (-)
G111767 LOC107575789 other downstream 1047611 15752821 ~ 15753235 (-)
G111621 NA other downstream 2046876 14712017 ~ 14753970 (-)
G111489 NA other downstream 2436424 14360228 ~ 14364422 (-)
AMCG00006663 hmga2 other downstream 3297618 13455432 ~ 13503228 (-)
G112059 NA other upstream 797851 17632891 ~ 17633445 (-)
AMCG00006754 NA other upstream 1504230 18339270 ~ 18366562 (-)
AMCG00006773 tmem243b,tmem243 other upstream 2788115 19623155 ~ 19631895 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other upstream 2798053 19633093 ~ 19635925 (-)
G112420 NA other upstream 3400816 20235856 ~ 20236206 (-)

Expression


Co-expression Network