AMCG00006736 (ppp1r12a)


Basic Information

Item Value
gene id AMCG00006736
gene name ppp1r12a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 16861107 ~ 16861777 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006736
ATGTCACAGCACAGAGTCCCTGTCAGTCAGGCCAGCATCAACTCCTCCGCTGATGACGCGCCACTGCAGAGCCTGGCCGTGACGTCACCCGCTTCTCGCGAGATTATGGAAAGCGAGTTCACACGCCACCCGACGTCCAGCACCCCCTCCCCACGCCCCAGTGCGCTGTGGGATAGTGGCAGTATAAAGTATATCCTCCCTCGGAAAGCGATAAGAAGCCAAGGCAGGAGGGGGATGAAGATGGCGGACGCCAAGCAGAAGCGGAACGAGCAGCTCAAGCGCTGGCTGGGCTCGGAGACCGACCTGGAGCCGCCCgtgctgaagaagaagaagaccaaAGTGAAGTTCGACGATGGCGCCGTCTTCCTGGCCGCCTGCTCCAGCGGCGACAGCGACGAGGTGCTCAAACTGCTGGACCGGGGCGCCGACATCAACTACGCCAATGTGGACGGGCTCACCGCCCTCCATCAGAGGGGACATTTGAGGCCAGCGCCGATCGGATCAAACGAGCCCCAGAGCCGCGGAGTCGCTGTTTACCTTGTTGCGGTGGCGAATGGCAGAGGGCCGGCCGTGGGGCTGCAGCTCGTCGGGCTGGATTGA

Function

symbol description
ppp1r12a Enables protein heterodimerization activity. Acts upstream of or within several processes, including actin filament bundle organization; convergent extension involved in axis elongation; and nervous system development. Located in cytoplasm. Is expressed in several structures, including central nervous system; digestive system; endoderm; mesoderm; and myotome. Orthologous to several human genes including PPP1R12A (protein phosphatase 1 regulatory subunit 12A).

NR:

description
PREDICTED: protein phosphatase 1 regulatory subunit 12A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006736 True 600 mRNA 0.63 2 16861107 16861777

Neighbor

gene id symbol gene type direction distance location
AMCG00006735 ppp1r12a,LOC107591124 coding downstream 26067 16800846 ~ 16835040 (-)
AMCG00006734 NA coding downstream 77550 16716275 ~ 16783557 (-)
AMCG00006723 NA coding downstream 799297 16051366 ~ 16061810 (-)
AMCG00006722 csrp2,LOC107383140,LOC107087065 coding downstream 821719 16032419 ~ 16039388 (-)
AMCG00006720 osbpl8 coding downstream 932966 15899543 ~ 15928141 (-)
AMCG00006737 lin7a coding upstream 198586 17060363 ~ 17072397 (-)
AMCG00006740 NA coding upstream 282922 17144699 ~ 17271736 (-)
AMCG00006741 ppfia2 coding upstream 464852 17326629 ~ 17327076 (-)
AMCG00006743 NA coding upstream 541849 17403626 ~ 17406828 (-)
AMCG00006746 slc6a15,LOC102794091 coding upstream 910190 17771967 ~ 17793459 (-)
G111765 NA non-coding downstream 1118392 15742446 ~ 15742715 (-)
G111759 NA non-coding downstream 1131574 15728613 ~ 15729533 (-)
G111736 NA non-coding downstream 1201695 15657998 ~ 15659412 (-)
G111730 NA non-coding downstream 1302906 15557943 ~ 15558201 (-)
G111728 NA non-coding downstream 1323271 15537476 ~ 15537836 (-)
G111940 NA non-coding upstream 900 16862677 ~ 16862967 (-)
G111945 rs16,rps16,LOC103382554 non-coding upstream 36642 16898419 ~ 16901537 (-)
G112020 NA non-coding upstream 247200 17108977 ~ 17327586 (-)
G112024 LOC103376870 non-coding upstream 266540 17128317 ~ 17135516 (-)
G112140 NA non-coding upstream 1537486 18399263 ~ 18408777 (-)
AMCG00006719 NA other downstream 964238 15881130 ~ 15896869 (-)
G111767 LOC107575789 other downstream 1107872 15752821 ~ 15753235 (-)
G111621 NA other downstream 2107137 14712017 ~ 14753970 (-)
G111489 NA other downstream 2496685 14360228 ~ 14364422 (-)
AMCG00006663 hmga2 other downstream 3357879 13455432 ~ 13503228 (-)
G112059 NA other upstream 771114 17632891 ~ 17633445 (-)
AMCG00006754 NA other upstream 1477493 18339270 ~ 18366562 (-)
AMCG00006773 tmem243b,tmem243 other upstream 2761378 19623155 ~ 19631895 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other upstream 2771316 19633093 ~ 19635925 (-)
G112420 NA other upstream 3374079 20235856 ~ 20236206 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028760 ppp1r12a coding NC_007115.7 CM002888.2 21488990 ~ 21584158 (-)
grasscarp (Ctenopharyngodon idella) CI01000019_04262562_04262937 PPP1R12A coding CI01000019 null 4262037 ~ 4264032 (+)