Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00006737 |
| gene name | lin7a |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030134.1 |
| NCBI id | CM030134.1 |
| chromosome length | 29342575 |
| location | 17060363 ~ 17072397 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| lin7a | Predicted to enable L27 domain binding activity. Predicted to be involved in maintenance of epithelial cell apical/basal polarity; neurotransmitter secretion; and protein localization to basolateral plasma membrane. Predicted to act upstream of or within exocytosis and protein transport. Predicted to be located in plasma membrane and presynapse. Predicted to be part of MPP7-DLG1-LIN7 complex. Predicted to be active in basolateral plasma membrane; cell-cell junction; and synapse. Is expressed in myotome and nervous system. Orthologous to human LIN7A (lin-7 homolog A, crumbs cell polarity complex component). |
| description |
|---|
| PREDICTED: protein lin-7 homolog A isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00006737 | True | 1220 | mRNA | 0.42 | 4 | 17060363 | 17072397 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00006736 | ppp1r12a | coding | downstream | 198586 | 16861107 ~ 16861777 (-) |
| AMCG00006735 | ppp1r12a,LOC107591124 | coding | downstream | 225323 | 16800846 ~ 16835040 (-) |
| AMCG00006734 | NA | coding | downstream | 276806 | 16716275 ~ 16783557 (-) |
| AMCG00006723 | NA | coding | downstream | 998553 | 16051366 ~ 16061810 (-) |
| AMCG00006722 | csrp2,LOC107383140,LOC107087065 | coding | downstream | 1020975 | 16032419 ~ 16039388 (-) |
| AMCG00006740 | NA | coding | upstream | 72302 | 17144699 ~ 17271736 (-) |
| AMCG00006741 | ppfia2 | coding | upstream | 254232 | 17326629 ~ 17327076 (-) |
| AMCG00006743 | NA | coding | upstream | 331229 | 17403626 ~ 17406828 (-) |
| AMCG00006746 | slc6a15,LOC102794091 | coding | upstream | 699570 | 17771967 ~ 17793459 (-) |
| AMCG00006745 | NA | coding | upstream | 872619 | 17945016 ~ 17954821 (-) |
| G111945 | rs16,rps16,LOC103382554 | non-coding | downstream | 158826 | 16898419 ~ 16901537 (-) |
| G111940 | NA | non-coding | downstream | 197396 | 16862677 ~ 16862967 (-) |
| G111765 | NA | non-coding | downstream | 1317648 | 15742446 ~ 15742715 (-) |
| G111759 | NA | non-coding | downstream | 1330830 | 15728613 ~ 15729533 (-) |
| G111736 | NA | non-coding | downstream | 1400951 | 15657998 ~ 15659412 (-) |
| G112020 | NA | non-coding | upstream | 36580 | 17108977 ~ 17327586 (-) |
| G112024 | LOC103376870 | non-coding | upstream | 55920 | 17128317 ~ 17135516 (-) |
| G112140 | NA | non-coding | upstream | 1326866 | 18399263 ~ 18408777 (-) |
| G112195 | NA | non-coding | upstream | 1622675 | 18695072 ~ 18745217 (-) |
| G112205 | NA | non-coding | upstream | 1811231 | 18883628 ~ 18886046 (-) |
| AMCG00006719 | NA | other | downstream | 1163494 | 15881130 ~ 15896869 (-) |
| G111767 | LOC107575789 | other | downstream | 1307128 | 15752821 ~ 15753235 (-) |
| G111621 | NA | other | downstream | 2306393 | 14712017 ~ 14753970 (-) |
| G111489 | NA | other | downstream | 2695941 | 14360228 ~ 14364422 (-) |
| AMCG00006663 | hmga2 | other | downstream | 3557135 | 13455432 ~ 13503228 (-) |
| G112059 | NA | other | upstream | 560494 | 17632891 ~ 17633445 (-) |
| AMCG00006754 | NA | other | upstream | 1266873 | 18339270 ~ 18366562 (-) |
| AMCG00006773 | tmem243b,tmem243 | other | upstream | 2550758 | 19623155 ~ 19631895 (-) |
| AMCG00006774 | meig1,LOC107581293,LOC107744135,LOC107592215 | other | upstream | 2560696 | 19633093 ~ 19635925 (-) |
| G112420 | NA | other | upstream | 3163459 | 20235856 ~ 20236206 (-) |
