AMCG00006740


Basic Information

Item Value
gene id AMCG00006740
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 17144699 ~ 17271736 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006740
ATGATTTTCTCAGATATGAATACGGGGACCAACTCCCCCAAGATCAAACTAAAAGAGTACGACCTTCTAGGGATTGTGGCAGCACAGCCTTTCCTATCTTGTGAGGAAGAGGTCTTAAACGTGTTAATTAAAGGCCGTGATCGGACTGGAATGAGGGTGAGGCTGGGCAGGCGCGCTGAGGGAGAGGGGTCTCAGTATACTAGGGAGTTTGCTGCACTGACAAAGGAGTTAAATGCGTGTAGGgagcagctgctggagaaaGAAGAAGAGATTTCAGAGCTGAAAGCTGAGAGGAACAACACCAGACTTTTGCTGGAACATTTGGAGTGCCTTGTTTCCAGACACGAGCGGTCGCTGCGGATGACAGTTGTGAAGCGACAAGCTCAGTCACCTTCAGGAGTTTCCAGTGAAGTCGAGGTCCTCAAAGCTCTGAAGTCTCTCTTTGAGCATCACAAGGCGCTAGATGAGAAGGTGAGGGAAAGACTGAGGGTCTCTTTGGAGAGAGTCTCTGCTTTGGAGGAGGAATTGACAGCAGCAAACCAGGAGATTGTAGCTTTACGCGAGCAGAACGCACACATCCAGAGGAAAGTTGCATCCGGAGATGGGTCTGAAGGCGAGCTTCTTGAAGGACCTGAACCTGGACAGAAAGTCCATGGAAAGCGGCTGTCCAATGGCTCCATCGACTCCACAGACGAGGCCAGCCAGGTGGTGGAGCTGCAGGAGCTACTGGAGAAGCAGAACTACGAGCTGGCCCAGATGAAGGAGCGCATGTCCTCCCTGTCCTCCCGCGTGTCCGAGGTGGAGCAGGAGCTGGAGACGGCCAGGAAGGACCTGCTCAAGTCCGAGGAGATGAGCCAGAAATACCAGAGGGACATAAGAGAGGCCATGTGCCAGAAGGAGGACATGGAAGAGCGCATCACCACGCTGGAAAAGCGTTACCTGAGCGCCCAGAGAGAGTCCACCTCGCTGCACGACATCAGCGACAAGCTGGAGAACGAGCTGGCCAACAAGGAGGCCTTCCTGCGTCAGATGGAGGAGAAAAACCGGCAGCTGCAGGAGCGTCTGGAGCTGGCGGAGCAGAAGCTGCAGCAAACCATGAGGAAGGCCGAGACTCTGCCCGAGGTGGAGGCTGAGCTGGCCCAGAGGATAGCAGCCCTCACTAAGGCTGAGGAGAGGCACGGGAGCATCGAGGAACGCATGCGTCACTTAGAAGGACAACTGGAGGAAAAGAACCAAGAGCTGCAGAGAgccaggcagagagagaaaatgaatgaagaacACAACAAGAGGCTGTCAGACACTGTGGACCGACTCCTGACTGAATCCAATGAACGTCTTCAGCTCCATCTAAAAGAGAGAATGGCTGCATTAGAAGATAAAAACGTTTTAATACAGGACTCGGAGAGCTACAGGAAACAGCTGGAAGATTCACTGCACGATAAAACAGTCAATCAGATCACTACAGGTCTGCCAAAGTCATACGGAGACCCAGAAGAGGACGGATGGGCCAAGTCACTCGGGGAGCACGAGTGGGCACGTTCTCAGCCAATCAGTGTCCTAGGCAGCCACCACTTTGAAAGTGACACTGAAATGTCTGACATCGATGACGATGACAGGGAAACCATCTTCAGCTCCATGGACCTCCTGTCTCCCAGCGGCCACTCCGATGCCCAGACCCTGGCCATGATGCTGCAAGAACAGCTAGACGCCATCAACAAAGAGATCAGGTTGATCCAGGAGGAGAAGGAGTCCACAGAACTGCGCGCCGAGGAGATTGAAAACCGTGTGGCCAGTGTCAGTCTGGAGGGTCTAAACTTGGCTCGAGTTCACGCAGGGACATCGATAACAGCCTCCGCCACGGCCTCGTCCTTGGCCAGCTCATCCCCTCCCAGCGGTCACTCCACTCCCAAACTCACCCCCCGCAGCCCGGCTCGAGAGATGGACCGCATGGGGGTCATGACCCTGATTGCAGCTGTCGATGAGGACGGCCGAGAAGACAAGGCCACTATAAAGTGTGAGACCTCTCCTCCTTCCACTCCACGTCAAGTGcgaatgacacacacactgccatcaTCGCACCACAACGATGCGAGGGGTTTATCTGCAACTCTGGAGGCCGAAGCCAGCGCCCTCAGTAGTGTCACCAGCAGCCAGGACTCACTTCACAAACAACCCAAGAAGAAAGGGATTAAATCATCAATAGGGCGCTTGTTCGGCAAGAAGGAGAAGGGCAGGCTTGGACAACTGGGCAAGGAGCTAGGGGGACCTGGGCAAGGAAGCATGTCTGACCCAGAACTGGGTGGCCAAGACGCTCTGGGATTAGGAAAGCTTGGGACCCAGGCAGAAAAGGACAGGAGGCTAAAAAAGAAGCATGAATTGCTAGAGGAGGCTCGTAGGAAGGGACTACCCTTCGCACAATGGGATGGGCCCACTGTAGTGGCATGGCTGGAGCTGTGGCTGGGAATGCCTGCTTGGTACGTGGCCGCCTGCCGAGCCAATGTGAAGAGTGGCGCCATCATGTCGGCGCTGTCCGACACCGAGATCCAGAGGGAGATCGGCATCAGCAACCCCCTGCACCGGCTCAAGCTGCGCCTGGCTATCCAGGAGATGGTGTCGCTCACCAGCCCGTCGGCGCCGCCCACCTCCCGAACACCTTCAGGCAATGTCTGGGTGACCCACGAGGAAATGGAAAACCTAACGGCTCCAACAAAAACGAAGGAGTCCGAGGAAGGAAGTTGGGCACAGACACTAGCATACGGTGACATGAACCATGAATGGATAGGCAATGAGACGAGTTTGCAGTACGGGATCATGTGCTTAAAGAAGCTGAACTATGACAGGAAAGAACTGGAAAGAAGAAGAGAACAGAGTCAACATGAAATGAAAGATGTGCTGGTGTGGAGCAATGACCGCGTGATCCGCTGGATACAGAGCATTGGGCTACGGGATTATGCCAACATTTTGCTCGAGAGTGGCATCCATGGGTCTCTCATTGCACTTGATGATAATTTTGACTACACCAGTCTAGCACTGTTACTGCAGATCCCAAACCAAAACACTCAGGCACGACAAATCCTTGAGAGGGAGTACAACAATCTCTTGGCACTAGGTACAGAACGAAGACTTGATGAATGCGATGACAAAAACTTCAGACGTGGCCCTTCTTGGAGGAGACAGTTCCCCCCAAGGGACGTCCATGGAATGAGTATGATGCCCGGTTCCTCCGAAACGCTGCCTGCTGGCTTCCGCCTGACCACGACATCAGGCCAGTCACGTAGGATGGCATCAGAAGGTTTCTGCATTTCAGTGGTGTCTGAATCTTTTTCCTGTGTGTGATAAGGATCCTCACACCCCCCTGCCTGAAGATCTTTGTGTCAAACGAACCGGATGGTCTGACGAGACGCACTGCCAAGAAACACTCCAAAAACAAGGGCCAACTCCAGGACAGGAAGCCAGATTGTCCTTTCAGAAGTTAACAGCCAAGTCCATATTACTGGGCACCAACATAAGGTGCTAAAAAATACCTGCAGACCTGTCATATTGTTGCAGTTTCTACTGTTCTCTTGTAACATACTAGTTGAGCATAtgtactgtgtatgtatttctttacagGACATGTGTAAGTTCTCtgtaaatgaatataaatatggcagtttatatatatatgtgtgtgatatatacacatatatattagaCACGAATTGCATGGGGTTTGTGTGAATACCCTAATGTTATTCCCATGTTTAAAgatgctgctgtttgtttttttttccatcatgaCACCgagttctgtttttcattgtgaCCAGGTTTACATGTTTAGCAGTGGTAGCACCCTGGAGAAAGACACTTGTTTCGATATGATTTCGTTAGCACTGCGTTCTCTTCAGCTGCAAAACCTGCCTCCATGTGGTGTTCAGTCCTGTGAGTCGTGTTGCGAACTTTAACCAGAACGAAATGGACCTCTGTTGGCAACTAGGAATTCTGGGGGAAGACACAGCAAAGCACTGTGATGGCTACTGATGTGACATGcacttttacagtttttctcccTAGTCTACTTCAAATAAGATCTGCACTTTCAGCCATGGACCAAGAAGATTTTATTATCACTCAATGGGATTTcctcttgttttttgttttgtttttttgtgtttgtttttttacagtaagATGTGGTAAATTGACACAGGACTTCATCACTGATGCTCCAACTAccttaaaacacaataaattcAAGTCAAAACGAACGGGATCAGAATTACTCTTTGAATCTTCATGCTTTCAGCCAAGTTGGCCTTTTTCGTGTTGACTTCAGCCAATGAAGTCACTGTATGAGATGAAATAACTGAAAGACAGAATGTTAGACTCTTAGTGTGTAAAGAGTATATAAGATATAATAGTCAAGaggaatttaaagaaaaacaaatattgcttgTTGTGACTTTATTTGGTGTTGCTATAATTGTTTACTCTTTGTTTCTGTCAGAGTGAGTTCTTAGAGTGATTAAATCCCTTCTGTAGTTGCAAAATCATTGCTGCTTGATCTTAGCTGAAGACCTGTCTTTTAGTTATTTCTAAAAgcagttttttggtttgtttgattttttactttttttgcatGTACAGAGgaatcttgtttgtttcattttgtgtctttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006740 True 4661 mRNA 0.49 31 17144699 17271736

Neighbor

gene id symbol gene type direction distance location
AMCG00006737 lin7a coding downstream 72302 17060363 ~ 17072397 (-)
AMCG00006736 ppp1r12a coding downstream 282922 16861107 ~ 16861777 (-)
AMCG00006735 ppp1r12a,LOC107591124 coding downstream 309659 16800846 ~ 16835040 (-)
AMCG00006734 NA coding downstream 361142 16716275 ~ 16783557 (-)
AMCG00006723 NA coding downstream 1082889 16051366 ~ 16061810 (-)
AMCG00006741 ppfia2 coding upstream 54893 17326629 ~ 17327076 (-)
AMCG00006743 NA coding upstream 131890 17403626 ~ 17406828 (-)
AMCG00006746 slc6a15,LOC102794091 coding upstream 500231 17771967 ~ 17793459 (-)
AMCG00006745 NA coding upstream 673280 17945016 ~ 17954821 (-)
AMCG00006747 mgat4c,LOC107553950,LOC106573111 coding upstream 716293 17988029 ~ 17991899 (-)
G112024 LOC103376870 non-coding downstream 9183 17128317 ~ 17135516 (-)
G111945 rs16,rps16,LOC103382554 non-coding downstream 243162 16898419 ~ 16901537 (-)
G111940 NA non-coding downstream 281732 16862677 ~ 16862967 (-)
G111765 NA non-coding downstream 1401984 15742446 ~ 15742715 (-)
G111759 NA non-coding downstream 1415166 15728613 ~ 15729533 (-)
G112140 NA non-coding upstream 1127527 18399263 ~ 18408777 (-)
G112195 NA non-coding upstream 1423336 18695072 ~ 18745217 (-)
G112205 NA non-coding upstream 1611892 18883628 ~ 18886046 (-)
G112270 LOC100136012 non-coding upstream 2137083 19408819 ~ 19418420 (-)
G112287 NA non-coding upstream 2243063 19514799 ~ 19515004 (-)
AMCG00006719 NA other downstream 1247830 15881130 ~ 15896869 (-)
G111767 LOC107575789 other downstream 1391464 15752821 ~ 15753235 (-)
G111621 NA other downstream 2390729 14712017 ~ 14753970 (-)
G111489 NA other downstream 2780277 14360228 ~ 14364422 (-)
AMCG00006663 hmga2 other downstream 3641471 13455432 ~ 13503228 (-)
G112059 NA other upstream 361155 17632891 ~ 17633445 (-)
AMCG00006754 NA other upstream 1067534 18339270 ~ 18366562 (-)
AMCG00006773 tmem243b,tmem243 other upstream 2351419 19623155 ~ 19631895 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other upstream 2361357 19633093 ~ 19635925 (-)
G112420 NA other upstream 2964120 20235856 ~ 20236206 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location