AMCG00006741 (ppfia2)


Basic Information

Item Value
gene id AMCG00006741
gene name ppfia2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 17326629 ~ 17327076 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006741
ATGATGTGTGAAGTCATGCCGACCATCAACGAAGACACCCCCATGAGCCAGCGGGGCTCGCAGAGCAGCGGCTCTGACTCGGACTCGCATTTCGAGCAGCTGATGGTCAACATGCTGGACGAGCGTGACCGGCTGCTGGACACGTTACGTGAGACGCAGGAGAGCCTGGGTCTGGCTCAGCAGCACCTCCAGGACGTGATCTACGATCGCGACTCCCTGCAGAGGCAGCTCAACTCTGCGCTCCCTCAGGTGGGTTAA

Function

symbol description
ppfia2 Predicted to be involved in synapse organization. Predicted to be located in synapse. Predicted to be active in presynaptic active zone. Orthologous to human PPFIA2 (PTPRF interacting protein alpha 2).

NR:

description
PREDICTED: liprin-alpha-2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006741 True 258 mRNA 0.60 2 17326629 17327076

Neighbor

gene id symbol gene type direction distance location
AMCG00006740 NA coding downstream 54893 17144699 ~ 17271736 (-)
AMCG00006737 lin7a coding downstream 254232 17060363 ~ 17072397 (-)
AMCG00006736 ppp1r12a coding downstream 464852 16861107 ~ 16861777 (-)
AMCG00006735 ppp1r12a,LOC107591124 coding downstream 491589 16800846 ~ 16835040 (-)
AMCG00006734 NA coding downstream 543072 16716275 ~ 16783557 (-)
AMCG00006743 NA coding upstream 76550 17403626 ~ 17406828 (-)
AMCG00006746 slc6a15,LOC102794091 coding upstream 444891 17771967 ~ 17793459 (-)
AMCG00006745 NA coding upstream 617940 17945016 ~ 17954821 (-)
AMCG00006747 mgat4c,LOC107553950,LOC106573111 coding upstream 660953 17988029 ~ 17991899 (-)
AMCG00006757 NA coding upstream 891097 18218173 ~ 18218449 (-)
G112024 LOC103376870 non-coding downstream 191113 17128317 ~ 17135516 (-)
G111945 rs16,rps16,LOC103382554 non-coding downstream 425092 16898419 ~ 16901537 (-)
G111940 NA non-coding downstream 463662 16862677 ~ 16862967 (-)
G111765 NA non-coding downstream 1583914 15742446 ~ 15742715 (-)
G111759 NA non-coding downstream 1597096 15728613 ~ 15729533 (-)
G112140 NA non-coding upstream 1072187 18399263 ~ 18408777 (-)
G112195 NA non-coding upstream 1367996 18695072 ~ 18745217 (-)
G112205 NA non-coding upstream 1556552 18883628 ~ 18886046 (-)
G112270 LOC100136012 non-coding upstream 2081743 19408819 ~ 19418420 (-)
G112287 NA non-coding upstream 2187723 19514799 ~ 19515004 (-)
AMCG00006719 NA other downstream 1429760 15881130 ~ 15896869 (-)
G111767 LOC107575789 other downstream 1573394 15752821 ~ 15753235 (-)
G111621 NA other downstream 2572659 14712017 ~ 14753970 (-)
G111489 NA other downstream 2962207 14360228 ~ 14364422 (-)
AMCG00006663 hmga2 other downstream 3823401 13455432 ~ 13503228 (-)
G112059 NA other upstream 305815 17632891 ~ 17633445 (-)
AMCG00006754 NA other upstream 1012194 18339270 ~ 18366562 (-)
AMCG00006773 tmem243b,tmem243 other upstream 2296079 19623155 ~ 19631895 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other upstream 2306017 19633093 ~ 19635925 (-)
G112420 NA other upstream 2908780 20235856 ~ 20236206 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028766 ppfia2 coding NC_007115.7 CM002888.2 21962316 ~ 22207873 (-)