AMCG00006746 (slc6a15,LOC102794091)


Basic Information

Item Value
gene id AMCG00006746
gene name slc6a15,LOC102794091
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 17771967 ~ 17793459 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006746
CTCAGACAGAGCCGTCATTGAAACGATGCTGAGCGCAGTGTACATGTGCTGCTGCGGCAATTTCACAATATAAACACTGTATTGCTGGAAAAAACCAGACGGAAAACAATTATTCCTCATTATTCCTGATTACTCATTGACCTCGGTAACAGatgtttggtaataatgaagaaataaaataacaaaaggcaTTTTTAACTCATTTCAGCGTATAAACTGTACTTCTTGAAACTAGAGAAGTATTTCTATTCAAAATATCCCGACTGCAAAGTGACTGGACCGGTTCACAAACTCCCACCCCCCCCTCTACCCATAGACAATTTTCACCCCTCGTACTTGTTTACTAATCAAATGCCAAAAAACAGTAAAGTCGTCAAGAGGGAACTTGACGATGATGTCACGGAATCTGTCAAAGATCTGCTTTCCAACGAGGACTGTGGCGATGACTCTTTCAAGAAAAGTTCGTTAATGGTAGATGATGTCCAagaagacaaagagagagacatcGAAGAGGGTTCAGACACAGAAGAGGAAAGACCAGCCTGGAACAGCAAATTGCAGTATATTCTGGCTCAGGTGGGCTTCTCAGTAGGGCTGGGCAATGTCTGGAGATTTCCGTACCTCTGTCAGAAAAATGGTGGCGGGGCATACCTAGTTCCGTACTTGATCCTCTTAATTGTGATCGGAATCCCACTATTCTTCCTCGAGCTTGCAGTGGGCCAGCGAATCAGACGAGGGAGCATTGGCGTGTGGAATTACATCAGCCCGCGGTTGGGAGGCATTGGCTTTGCAAGTTGTGTGGTCTGCTTTTTTGTTGCTCTCTATTACAATGTCATTATTGGATGGAGCCTCTTCTACTTTTCCCAGTCTTTTCAGCAGCCTCTGCCATGGGACCAGTGTCCACTTGTCAAGAACAAAACCAATACATTTGTGGAGCCGGAGTGTGAGAGGAGCTCCGCCACCACGTACTACTGGTACCGAGAggccctggacatctcagactcCATCTCAGAGAGCGGGGGACTCAACTGGAAGATGACAGTGTGCCTGCTGGCTGCGTGGACAATGGTGTGCCTGGCTATGATCAAAGGCATTCAGTCTTCGGGCAAAgTGATGTACTTCAGTTCCCTCTTCCCCTACGTGGTGCTGATCTGTTTTCTGGTGAGAGCTCTGCTACTGAAAGGATCTGTCGATGGAATTCGTCACATGTTCACCCCCAAGCTTGAAATCATGCTGGAGGCGAAAGTGTGGCGTGAGGCGGCAACGCAAGTGTTCTTCGCTCTGGGTCTGGGGTTCGGCGGCGTCATTGCCTTCTCCAGCTACAACAAGCGGGACAACAACTGCCACTTTGACGCTGTCCTGGTGTCCTTTATCAACTTCTTTACCTCAGTACTGGCAACTCTGGTAGTGTTCGCTGTGCTTGGGTTCAAGGCAAACATCATGAACGAGAAATGTGTGGCACACAACACGGATAAGATTGTCACATTCCTGGGCACTGGAGTCCTAAGCCATGACCTGATTCCCCAGCATATCAATTTCAGTCACGTCACTTCAGTTGACTATTATCAGATGACAGACATTATCAAAGGAGTGAAGGAAAAAGACTATTCAAGTCTGGGGCTCAATCCATGCAATATCGAGGACGAACTGAATAAGGCGGTCCAAGGCACTGGCTTGGCTTTCATTGCCTTCACTGAAGCAATGACTCACTTCCCTGCGTCCCCCTTCTGGTCAGTTATGTTTTTTCTCATGCTTGTCAACCTGGGTCTTGGCAGCATGTTTGGGACCATTGAAGGGATCATTACTCCCATTGTAGACACGTTCAAAGTTCGCAAGGAGTTTCTTACAGTTGGCTGCTGTCTCCTGGCTTTCAGCATTGGGCTAATCTTTGTGCAACGCTCTGGGAATTACTTTGTCGCTATGTTCGATGACTACTCCGCCACCCTGCCGCTACTGATTGTGGTCATCCTGGAAAACATCGCTGTGGCCTGGGTCTATGGGACAGACAAGTTTTTTGAGGATCTCAAAGACATGCTTGGATTCTCCCCATTCCGATTCTACTATTACATGTGGAAGTATATCACCCCTTTAATTTTACTTGCACTGCTGGTGGCCAGTATAATTCAGCTGGGAATGACTCCCCCCAGTTACAGTGCCTGGATTGGGGATTTGGCTAAAGAGCAAGCGCTGAACTACCCACCTTGGGGCCTGGCGGTTTGTGTGTCCTTGATCATCACGGCAATCCTCCCCGTGCCTGTCGTCTTCATCCTCCGTTACTTCAACCTCATCGAGGAGAGCTCCAGCAGCCTGTCAGCGGTGTCCTACAAGAAAGGAAGGATCATAAAGGAGAATGTCAGTCCCGAAGATGACGACGCCAGTCTCATCCACGGGAAAACTCCCAGTGAGCTCCCGTCACCAATGCCAGGCAAAAGCATCTACAGGAAGCACAGCGGCTCCCCCGATATGGACACTGCTCCCAACGGCCGCTACGGCATTGGCTATCTGATGGCTGACATGCCCGACATGCCCGAATCTGACTTGTAGCTCTTCCAAAACAGTGGAATGAAAAAACCCACCCTTTTCCCTAgcatactgtatgtatgtaagcGTGCACTTAGCTGTCTGtaaacatttgcatatattaactgtatatctTGTAGATAATGTAGCATTTGTTATGTGCGTACGCTACTTTCCTTGTCTCTTCTATAAACTATGTTATTAGATTTGCTATCGAATGGCTGTATATAATGATTTTGCCGCAAACATGACAAAAATCTCACTTCCGAAAGTCACGGTAAGGCCAGTTAGTTTCTCGATTCACTGTAGAACGCACAAGAATGACATGAAGAAAGGACTGGTACGATCATTTATGTTACTGTAACTTCAACACAATGTATTAGCAAAATGATGGCATTTCAACCCGAATTATTGTTCTCTAAAAATGTGTGCCTAACAAATTCtgatatttattgtttatagAATACTTAGTGAacttgttatatttatattccatattctgtaaatatatattatatatatttatctgaattatttgcaattcaaaagtCGCTTTTTGTCAGAGGTACTGAGAATATAAACTGTTGGTCTCTGTTTATTGATGTGCTGTCACTGTAAAGCATTCTGATACTTTTCATTCCTGTAAagaatacttttttcattaaaatgcttaaaaacgCTGTCTATTTTTTTCCAAGTGAGATTAAAGATCAAAT

Function

symbol description
slc6a15 Predicted to enable proline:sodium symporter activity. Predicted to be involved in leucine transport and sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC6A15 (solute carrier family 6 member 15).

NR:

description
PREDICTED: sodium-dependent neutral amino acid transporter B(0)AT2

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K05048 SLC6A15S; solute carrier family 6 (neurotransmitter transporter, amino acid/orphan) member 15/16/17/18/20

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006746 True 3236 mRNA 0.45 12 17771967 17793459

Neighbor

gene id symbol gene type direction distance location
AMCG00006743 NA coding downstream 365139 17403626 ~ 17406828 (-)
AMCG00006741 ppfia2 coding downstream 444891 17326629 ~ 17327076 (-)
AMCG00006740 NA coding downstream 500231 17144699 ~ 17271736 (-)
AMCG00006737 lin7a coding downstream 699570 17060363 ~ 17072397 (-)
AMCG00006736 ppp1r12a coding downstream 910190 16861107 ~ 16861777 (-)
AMCG00006745 NA coding upstream 151557 17945016 ~ 17954821 (-)
AMCG00006747 mgat4c,LOC107553950,LOC106573111 coding upstream 194570 17988029 ~ 17991899 (-)
AMCG00006757 NA coding upstream 424714 18218173 ~ 18218449 (-)
AMCG00006756 NA coding upstream 425457 18218916 ~ 18337052 (-)
AMCG00006755 NA coding upstream 622457 18415916 ~ 18486164 (-)
G112020 NA non-coding downstream 444381 17108977 ~ 17327586 (-)
G112024 LOC103376870 non-coding downstream 636451 17128317 ~ 17135516 (-)
G111945 rs16,rps16,LOC103382554 non-coding downstream 870430 16898419 ~ 16901537 (-)
G111940 NA non-coding downstream 909000 16862677 ~ 16862967 (-)
G111765 NA non-coding downstream 2029252 15742446 ~ 15742715 (-)
G112140 NA non-coding upstream 605804 18399263 ~ 18408777 (-)
G112195 NA non-coding upstream 901613 18695072 ~ 18745217 (-)
G112205 NA non-coding upstream 1090169 18883628 ~ 18886046 (-)
G112270 LOC100136012 non-coding upstream 1615360 19408819 ~ 19418420 (-)
G112287 NA non-coding upstream 1721340 19514799 ~ 19515004 (-)
G112059 NA other downstream 138522 17632891 ~ 17633445 (-)
AMCG00006719 NA other downstream 1875098 15881130 ~ 15896869 (-)
G111767 LOC107575789 other downstream 2018732 15752821 ~ 15753235 (-)
G111621 NA other downstream 3017997 14712017 ~ 14753970 (-)
G111489 NA other downstream 3407545 14360228 ~ 14364422 (-)
AMCG00006754 NA other upstream 545811 18339270 ~ 18366562 (-)
AMCG00006773 tmem243b,tmem243 other upstream 1829696 19623155 ~ 19631895 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other upstream 1839634 19633093 ~ 19635925 (-)
G112420 NA other upstream 2442397 20235856 ~ 20236206 (-)
AMCG00006807 NA other upstream 2853861 20647320 ~ 20653659 (-)

Expression


Co-expression Network