AMCG00006747 (mgat4c,LOC107553950,LOC106573111)


Basic Information

Item Value
gene id AMCG00006747
gene name mgat4c,LOC107553950,LOC106573111
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 17988029 ~ 17991899 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006747
gaGGTTTCAGCAGCTACTTTAACATCATGAGGCTGATTTGGAAGTATCTGGACAAAATGAGGTGCTTCCGAAAGCGCTCAACTATTCCTCTCTTGGGTGAAGAGGACAAGAGGCAACTACGAGACACATCAATACATCAACTTAATTCAGAACGTTACGTCCATACTTTCAAAGATTTATCAAATTTTTctggaaatataaatgttacatatcGCTACCTTGCAGGATCACCCCTACCCAGAAAAAAATACCTAACCATTGGATTATCATCTGTGAAAAGGAAAAGAGGAAATTATTTACTGGAAACAATAAAGTCTATTTTTGACCAGTCCAGCTATGAAGAATTAAAGGAGATAGTGGTCGTGGTTCATTTGGCAGACTTTGACTTGGCATGGTGTGAAAGCTTAGTGCAGGATATCTCCAGGAAGTTTGCCCACCATATTATAGCTGGAAGACTTCTGGTCATACACGCTCCTGAGGAGTATTACCCATCACTGGATGGATTAAAGAGAAACTATAATGACCCAGAGGACAGGGTCCGGTTCAGATCCAAGCAAAATGTCGACTATGCTTTCCTTTTAAATTTCTGCACCAATCTCTCAGATTATTACATGATGCTCGAGGATGACGTCAGGTGCTCCAAGAACTTCTTAACTGCCATGAAAAAAGTTGTTACCTCAAGGGAGGGCTCCTACTGGGTTACTCTGGAGTTCTCCAAGTTGGGTTACATCGGGAAACTCTACCATGCCAACGATCTCCCTCGCCTGGCCCACTTCCTGTTGATGTTCTACCAGGAGATGCCGTGTGATTGGCTGCTAATTCATTTCCGGGGGCTTCTTGCACAAAAGGATGTCATACGGTTCAAGCCATCTTTGTTTCAACACATGGGATATTATTCTTCTTACAAGGGagctgaaaacaaactgaaggatGATGACTTTGAAGAAGACTCCTTTGATATTCCAGATAACCCACCAGCCAGTCTCTACACAAATATCAATGTCTTTGAAAACTATGATGCCAGCAAGGCGTATAGTAGTGGGGATGAGTACTTCTGGGGCAAATCCCCTTCGACTGGAGACTTCTACGTCATTGTTTTCGAAAAATTGACCAAgatcaataaaattaaaattgtcacAGGAACGGACGACCGTCAAAATGATATTTTGCATCACGGCGCCTTAGAAGTTGGAGAGAAATTAGTTGGGACCAAAAAGGGAAAGCAGTGTTCAGCTTACATTACCTTAGGGGAATTTAAAAACGGGAACATTGAAGTCCTGGATGTGGAACATAAAATCTCATTTGATATTGAATGTGTAAGAATTGTTGTGACAGCTAATCAAAAGGAGTGGTTGATTATAAGGAGTATAAGCCTTTGGACTACACAGCCCCCAAGTCAA

Function

symbol description
mgat4c Predicted to enable acetylglucosaminyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MGAT4C (MGAT4 family member C).

NR:

description
PREDICTED: alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C isoform X1

GO: NA

KEGG:

id description
K13748 MGAT4C; alpha-1,3-mannosylglycoprotein beta-1,4-N-acetylglucosaminyltransferase C

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006747 True 1400 mRNA 0.42 3 17988029 17991899

Neighbor

gene id symbol gene type direction distance location
AMCG00006745 NA coding downstream 33208 17945016 ~ 17954821 (-)
AMCG00006746 slc6a15,LOC102794091 coding downstream 194570 17771967 ~ 17793459 (-)
AMCG00006743 NA coding downstream 581201 17403626 ~ 17406828 (-)
AMCG00006741 ppfia2 coding downstream 660953 17326629 ~ 17327076 (-)
AMCG00006740 NA coding downstream 716293 17144699 ~ 17271736 (-)
AMCG00006757 NA coding upstream 226274 18218173 ~ 18218449 (-)
AMCG00006756 NA coding upstream 227017 18218916 ~ 18337052 (-)
AMCG00006755 NA coding upstream 424017 18415916 ~ 18486164 (-)
AMCG00006759 NA coding upstream 544150 18536049 ~ 18603662 (-)
AMCG00006758 LOC107574886,LOC107572944,LOC107679613,LOC106573116,LOC107665720 coding upstream 650485 18642384 ~ 18646768 (-)
G112020 NA non-coding downstream 660443 17108977 ~ 17327586 (-)
G112024 LOC103376870 non-coding downstream 852513 17128317 ~ 17135516 (-)
G111945 rs16,rps16,LOC103382554 non-coding downstream 1086492 16898419 ~ 16901537 (-)
G111940 NA non-coding downstream 1125062 16862677 ~ 16862967 (-)
G111765 NA non-coding downstream 2245314 15742446 ~ 15742715 (-)
G112140 NA non-coding upstream 407364 18399263 ~ 18408777 (-)
G112195 NA non-coding upstream 703173 18695072 ~ 18745217 (-)
G112205 NA non-coding upstream 891729 18883628 ~ 18886046 (-)
G112270 LOC100136012 non-coding upstream 1416920 19408819 ~ 19418420 (-)
G112287 NA non-coding upstream 1522900 19514799 ~ 19515004 (-)
G112059 NA other downstream 354584 17632891 ~ 17633445 (-)
AMCG00006719 NA other downstream 2091160 15881130 ~ 15896869 (-)
G111767 LOC107575789 other downstream 2234794 15752821 ~ 15753235 (-)
G111621 NA other downstream 3234059 14712017 ~ 14753970 (-)
G111489 NA other downstream 3623607 14360228 ~ 14364422 (-)
AMCG00006754 NA other upstream 347371 18339270 ~ 18366562 (-)
AMCG00006773 tmem243b,tmem243 other upstream 1631256 19623155 ~ 19631895 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other upstream 1641194 19633093 ~ 19635925 (-)
G112420 NA other upstream 2243957 20235856 ~ 20236206 (-)
AMCG00006807 NA other upstream 2655421 20647320 ~ 20653659 (-)

Expression


Co-expression Network