AMCG00006752 (LOC107577127)


Basic Information

Item Value
gene id AMCG00006752
gene name LOC107577127
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 18368664 ~ 18400191 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006752
ATGGCTGAAGTAAACTGGAAGGAGATTGCCCTGTTGATGGGGGTGGTTGTGGCCTGTTACTGGAACAGCCTGTACTGTGGTTTTGTCTTTGATGATGTCTCTGCCATTCTGGATAACAAGGACCTGCGCCCATCAACGCCACTGAAAAATCTCTTTCAAAATGACTTCTGGGGAACACCAATGGCAGAGGTAGCATATGAAAGGAGCCACAAATCGTATCGGCCACTGACAGTCCTTACCTTCCGATTGAACTATGTATTTAGTGAGCTTACCGCAATGTCCTATCACCTCCTGAATCTCCTGCTTCACGGTGTCGTCTGTGTAATCTTTCTGCGGGTTTGCCGGCTCTTCTTGGACAAGAACTCAAGTCTGGTAGCTGCCTTGCTTTTTGCTGTCCATCCAGTCCACACAGAAGCAGTAACTGGGGTTGTTGGAAGAGCTGAACTTTTGTCGTCTATATTCTTATTGGCAGCATTCTTGTCCTATACGAAATCCAAAGGCTCAGACAATTCAATTGTTTGGACTCCCATTGCTCTGACTGTGGTTTTGGTTGCAGTTGCAACATTATGCAAGGAACAAGGGATAACAGTGATTGGAATATGCTGTGTCTATGAAGTATTTGTCGCTCAAGGGTTTACTTTACCTATGTTGGTCGACACATTGCTTCAGGTTCTGCGTGGAAAAGATGGTCTTCCATATTCGGTTCTGCAGACAGTGTTAAAACTTATTGTTCTAATTATAAGCACTTTATTATTGGTAATTGTGAGGGTCCAGGTTATCCAGTCTCAGCTGCCTGTCTTTACAAGATTTGATAACCCTGCAGCCGTTAGCCAGACTCCAGTGAGGCAACTCACGTTCAACTACCTCTTGCCTGTGAATGCTTGGCTACTCCTGAACCCATCAGAACTGTGCTGTGATTGGACAATGGGTACCATTCCACTGGTTGAATCCATACTGGATATCAGGAATCTTGCCACTGTATCTTTCTACTGTCTGCTTGGGTTGATGGTTTATCAAAGCCTCCGGTACTCTGAAAACTCATCCAAAACTGTAATCATGGTGAGtAATCTGAAAAAACTTTCATGGCTTGGCATGGCTATCCTGCTTGGAACTCATGCAGTGAAGACTGTTTATAGAAATTGGGACTGGGAGTCAGAGTACACACTGTTCACCTCTGCTTTAAAggtcaataaaaacaatgccaaGCTTTGGAATAATGTTGGCCATGCGTTGGAGAaccaaaataattatgaaagggctttgaaatattttcttcaagCTACCAGAGTTCAGCCAGATGATATTGGTGCCCACATGAATGTAGGAAGGACATACAAAAATctgaacaaaaccaaagaaGCTGAAGATGCCTACCTGATTGCAAAATCCCTCATGCCACAGATCATTCCAGGAAAAAAGTATGCAACCCGTGTTGCACCCAATCACCTTAATGTTTACATAAACCTTGCAAACTTAATACGGAATAATGAATCTCGCTTAGAAGAGGCGGACCAGCTGTACCGACAGGCGATCAGCATGAGACCCGACTTCAAACAGGCCTACATTAGCAGAGGAGAGCTTctgctgaaaatgaataaaccaGTAGAGGCACGGGAAGCTTATCTCAGAGCCTTGGAACTGGACAGGACCAATGCGGACCTGTGGTATAACCTTGCCATTGTTAACATTGAAATGAAGGAGCCCTCTGAGGCTCTCAAAAACTTCAACCAGGCTTTAGAGCTCAGACCAGAAGCTAACCGGAGGTTTCTCATTTATATCGAGGAGGACCCAGGTGATGCAAATGGGTACTTCAACCTTGGGATGCTTGCTATGGACGACAATAAGAACAAAGAGGCAGAGAAATGGATGAAAAAGGCCATCAGACTGCAGCCAGGTTTTCGGAGTGCACTTTTTAATTTAGCTCTTTTGTATTCCCAGACGGGGAGAGAACTGGATGCTTTACCTGTCCTCAGTGAGTTATTAAGATATTATCCACAACATACGAAAGCCCTGATCCTTAAAGGAGACATTCTGATGAACCAGAAAAAAGACACTAAAGGGGCCAAGGAATGCTTTGAAAAGATTCTTGAAATGGACCCTACCAACGTGCAGGGGAAGCACAACCTCTGTGTGGTTTACTTTGAGGAGCGTGACCTTGTGAAAGCCGAGAAGTGCCTGGTCGAGACCTTGGCCCTTGCTCCGCATGAGGAGTACATTCAACGCCATTTGAGCATAGTTAGGGGCAAGATTGCTGCTTTGAATGCTGCAGGACAAGAGGGATCTCCAGTAGATGGCAACCAAAGCCCAGTtgtggaggagaaaaaaacagagTCAGAGAAGGCCAAGAATGACAAGAATGCACGGAAATCCTCCCCTGCGAAAAACACCAGCCAGAGCAAAGAGCAGCCGAGAAAGCAGGAGAACGCACAGGCTGACAAGCGGACTAAGACCAAATCTACAAAAGAGATTAAGgagattgaaaagaaaagggaagCGGCCTTAAAGAGACTGGAAGAGATTGAACGTATTTTAAGT

Function

NR:

description
PREDICTED: transmembrane and TPR repeat-containing protein 3-like, partial

GO: NA

KEGG:

id description
K23424 TMTC; protein O-mannosyl-transferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006752 True 2535 mRNA 0.45 12 18368664 18400191

Neighbor

gene id symbol gene type direction distance location
AMCG00006753 NA coding upstream 29207 18317693 ~ 18339457 (+)
AMCG00006750 NA coding upstream 403893 17963401 ~ 17964771 (+)
AMCG00006751 NA coding upstream 426440 17938902 ~ 17942224 (+)
AMCG00006748 NA coding upstream 504006 17860132 ~ 17864658 (+)
AMCG00006749 NA coding upstream 513274 17817815 ~ 17855390 (+)
AMCG00006769 LOC108263977,LOC108444204,LOC107665551,LOC107559415 coding downstream 1137142 19537333 ~ 19541966 (+)
AMCG00006772 grm3,LOC107090533 coding downstream 1155212 19555403 ~ 19568758 (+)
AMCG00006770 LOC106594134 coding downstream 1211128 19611319 ~ 19621286 (+)
AMCG00006771 NA coding downstream 1235926 19636117 ~ 19642171 (+)
AMCG00006779 NA coding downstream 1246939 19647130 ~ 19650694 (+)
G112106 NA non-coding upstream 153616 18214793 ~ 18215048 (+)
G111941 NA non-coding upstream 1505309 16863156 ~ 16863355 (+)
G111909 NA non-coding upstream 1558194 16779402 ~ 16810470 (+)
G111898 NA non-coding upstream 1646616 16714818 ~ 16722048 (+)
G111788 LOC106576514 non-coding upstream 2498863 15849921 ~ 15869801 (+)
G112181 NA non-coding downstream 293687 18693878 ~ 18694311 (+)
G112182 NA non-coding downstream 294968 18695159 ~ 18745217 (+)
G112207 NA non-coding downstream 500748 18900939 ~ 18903543 (+)
G112233 NA non-coding downstream 695437 19095628 ~ 19100398 (+)
G112259 NA non-coding downstream 995726 19395917 ~ 19396197 (+)
AMCG00006672 NA other upstream 4429189 13933666 ~ 13939475 (+)
G111197 NA other upstream 5325216 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 5716849 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 6045386 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 8800388 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 2537306 20937497 ~ 20944977 (+)
G112567 NA other downstream 2648145 21048336 ~ 21049038 (+)
G112600 NA other downstream 2742674 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 2865062 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 3217441 21617632 ~ 21622508 (+)

Expression


Co-expression Network