AMCG00006754


Basic Information

Item Value
gene id AMCG00006754
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 18339270 ~ 18366562 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006754
atgcctGGGATTATTGACTGGAGTGAGCTGATGAAAGTTGATCCAGATGCCTTAACAGAACAAGAGAGGCTGGCTAATAAACTTTTGGATGTAATTTCAAAGGTGGAAAGGAGGCACCTGAAAGATGATAGTCCAGAAAGTATCATCCAGCTTTTCAGAATCACTCAGTCCTTAATGAAGATGAAAGCACAGGAAGCAGATCTAGCTGTAGAAGAAGTAGAGAAAGCTGGTGAAGAGCAAGCAAAAATAGAAAACCAATTACGAAGTAAAATCTACAAGTTGGAGAATGAGCTGGAGATGGCTCAGCGTTCTATGGGGGGACGCGATACCCGGTTTCTTCGCGATGAAATCCATCAGCTGGAGAATCAGTTGGAGCgcagggagaaggagatggcTGAGATGGAGAAAGAAATCAACAAGGAGAAAAAAGCTAATGAAGAAAATGAGCAATTCCGGCAAGATGTTATTTACTATCGGAGGGAGCTGGACCAGAGAGAGCCGCCTCAATCcacagagaaggaaagagaagcGCAAGCAAAACTGACTGGGTTAAACCGAGAGCTTCACCAGTGTCTCGATGAGTTGCAGATGATAACGGACGAGAGGGATGCCTTGAAGGCCGAGAACGAGAAGCTGGAGAAGTACATGGCGGAGTCCTCGAATGAAATGATCTCCATGTCAGAGGAGTATGTCAAGATGAAAACCATAGTCCAGCAGACCGACAGCCTCATGGACCAGCTGAGGAAAGAGCGAGAGCAGCTGAGGTTACAGGTGCAAGAGCTGACAGAGCAGATCCAGGCCAGGTCAGACGAGGATGACCCGGTCATGGCAGCAGTCAATGCAAAAGTTGACGAATGGAAGAGAGTATTGTCTTCAAAGGATGAGGAGATTGTGGAATACCAGCAGATGATAAGAGAGCTCAAAGACAGACTCCGAATGGTACAATTAGACTCCGACAAGAAAGATGTCATGGCTCTCCAGCAGGCTGTGCAGGAACGAGACAGTCAGATAAAGATGCTGACTGACCAAGTCGAACAATATACGAGCGAGATGGAAAGAAATGCTGAAATGATTGAAGAACTCAAGAAACCACTTCAGAAAGATCGGGGACCTTCCATGCTTAAACAGCAGAGCGTAATTGAAGAACTTAAGAGAAAAATCCAGGATGCCGAGAGGAAGGTACAGGAGGCTAAAAGGGAAGCTGAGATGGCAATATCTGATGCAGGAGAAAAGGACAAAGAACTGAGTGAGGCTCTGGCACGCATGAGAGCATATGAGGCTGGTGAATATGGCCTAGAAAATGCTGTGGCAGAAATCAAAGAATGTAAAAAACAGATAAAGCTCAAGAATAATCACACCGAGTCTCTGATCAAAGACATCAATAAacttgaaatgaaaatcaatgaCTTGTTGGAAGAAAATGAAGACTTCAGAGAACGCTTGGGACTTAATCCAAACGAAGTTGTTGATTTGACTGAATTTCGAAGATCTAAGGCTTTAAAACTACAGCAGTGCACATTGGAAAACAAGACTCTTTTAAACCAGATTGCAAGTCTAGACGAAGAAAGACTGAACCTGAAGAGGCACATCAGAAGACTTGCAAAAGACAAAGTGAGTGAGTTGTCGCTGGAAAATAAGCAGCTTGACCAAGGAATGAAAGAAATACTGCAAGCAATTAAAGAATATCCAAAGAATTCACAGAGAGAAACCGGTCTCAATATTCCCAGTCTTGAAAGACTTGTCAGTGCGATTGAGATGAAGAATGCAGACGGGAAGTTTGATGCTAGTGTGCACCTAAAGGCTCAGGTTGACCAGCTCACGGGGAGAAATTTTGAACTGAGAAATGCAATGACAGAAGCTCGTAAAGAGGCATCAAATGCATTGAGCCAACTGTTGAAAGCCAACGAAAAGATTGTACACCTGGAGAGTGAGGTAGAAGCATTAAGGCAATCGGGAGGGAGCAGCATTACTTTCAAGACTTTAAATCTTCCTGAAGAGATGGCCCCATCTAGTATGGAAGTCATCAGTTCTCTTAATGAATATGCAGTCAGACTTCTCCAGGAGCTTAACAACAAAGAAGAATCTACACAGCACTTGGAAGAAGTCTTAGAGGAGTACAAGCATAAGTTTGCTGTGATTCGTCATCAACAAGGACTTCTATACAAAGAGTATCAGAGTGAAAGAGAAGCGTGgcagaaggagaaagaaaaagctacAGAATTGATTAAAAAAGCTGAAGAGCAAAAGGAGGTTGATGCTGTGAGAATAAAAGAGTTTAATCATTGGCTTGAAGTGCTACAGACTGACCCATCAGAAATAAAGAAGCAGGTCTCTGAAGCGGCCCGTAAAATGACTGTTTTGCGGGTGAATGAAAAGTCCTTGACGAGGCGGTACACAACCCTGCTAGAAATGGAGCAGCACCTAcgtaaagaaaacaacaaactgaaGAATGAAAGCATTGCAATGGAATCTGCAGTAGCTGACAGAGTAGGTTACTTGCAGCGCTATAAGGACATGGCAGCTTTCAAAATCGCAGCCTTACAAAAAGCCTTGGATGACAGTGTCTCCTCTTCAGAACTCGAGAGGtcaaataaactgtataatgaaCTGACAAGTAAATACAGGGATGTTCTGCAAAAGGATAATCTGCTGGTTCAAAAAACAATGAATCTGGAACATTTAGAGGGTGAGAATTTGGTCCTTCAAGAACAAATTAATGGCTTAAACAAAGAACTGGAGATCACTAAAGAGAAACTTCATACATTAGAGCAAGCCTGGGAACACATCACTAAACTGGGCGGGGAAAGCTCAATGGATAAGGCAACCAAAGCAATTACAAACAGTGAAATTGTGTCCATCTCCAAGAAGATAACTATGCTGGAGATGAAAGAACTGAACGAGCGTCAGAGAGCAGAGCATGCTCATAAAATGTATGAGCATTTAAGAAGTTCTTTGAAACAAGTAGAAGACCGCAACTTTGAGCTGGAATCGAAATTTGCTGAGCTCAGTAAGCAAAATTTGGAAGCTCAAAAGATCGAGCAGGAGCTAAGAGATGAACTAGCCAGCAGTGTGAGTAAGGCAGTCAGTGATGCTCACAGAAGACGGATCACGGAGCTGGAGAAAATCGAGGCAGAGCTGAAAATTGAAGTTTCAAAGTTACGAGAGGTCTCGGATGTAGCCAAAGCACAAGTCTCTGCTTTAGAGTCTCACCAGCAGTCTAGAGAGAAGGAGGTGGAATCCCTGAGGAAGCAGGTGCTAGATTATCAGCTCCATCAACACATTGTGGCACTGCAAGTGAGCGAGGCCACAGCTGTCAGCAAACTGGAGGCAGCCATCGTGAAAGTGCAGAAGCTTGAGGCCTATAGCCTGCGTATGGAGCAGAAACTTGACGACAAGGAACAGGCCTTGTACTACGCCAGGCTGGAGGGGCGCAACCGCGCTAAGCACCTGCGTCAAACTGTGCAGGCGCTCAGGAGGCAGTTCAGTGGGGCCTTGCCTCTGCCCCAGCAGGAGAAGTTTTCTAAGACTATGATCCAGCTTCAGAACGACAAGCTGAAGGTCATGCAGGATATACAGTCGACTAAGGAGGATCGGAGGAAGgcggaggaaaaagccctggaACTGGAAGTCAAGATGAAGGGACTAGAGGAGCTGCTTAGCACATTGAAAGATGCTAAAGGAGCACAGAAGgtgATTGAGTGGCATAAGAAAATCGAAGATCTTCACCTTCAAGATCTAAAGCATAAAAGAGAGCTTGCCTCTCAAAATGAAGAGATAAAATACTTGAAGAGTGTAATTGCTGAGCTAGAACGGACAACTAGCAGACTAGAAGAGGAAATTGTTCAGCAAAACATTtttcATGAGGAACAGCAGCTGTCTTGGGATCAGAGAGAGGTAGAACTAGAAAGGCAGCTGGATCTGTATGAGCGGCAGCACAATGAAGTACTCAGCACTGCACAAAAGTTTGAGGAAGCACTTGGAGCTCTACCAGACCCCAGCTTGCCTCTGCCACACCAGCTTGACTTTGCTTTGGGGAAAATCAAAGAGCATGTCCGCACCATCCTAGAAACACGAGGAACCTGCAAGACGTTAGAAGAAAAACTTAAAGAAAAAGAGGCTGCTCTGTGGGAAGCAGAGCAAAACGTGCTTTCAAGGGACAAGGTCATCAATGAGCTGAGGCTGCGTCTGCCTGCTACAGCTGAGAGGGAAAAACTAATTGCAGAACTTGGGAAAAGAGAGGACGACCCAGAGTACCAACAGGCCATAAAAGTGGCCCATCAAACTATCGCCAACCTCCAGGCCAGGCTAAACCAGAAGGAAGATGTTCTGAAAAAATACCAGAACCTCTTGGCCAGAGCAAGACAGGAACAAGAAGATATTGCTAAGAAACATGAAGCGGAAGTTAAGGTTTTGCATGAGAAATTGGACTTGCATTCTGATACGTCACTTCACAAGTTCAAACAAACAGCCCTGGAATTGATGCAAAGGCCTTCCATGTCTGTCCCCACGTCAAAGCACCTGGTTCGCCTGGCTGAGATGGAGCAAACTGTGGCTGAGCAAGACAACTCACTTTCTAACCTCACAGAGAAGCTAAAGAGAGTAACAGCTGAGCtagaaagacagagacaaaTCACTGCATTGAAAATCAAGGAACAtgcagatgaaaaaacaaaGCTTGAAGAAAGACAAGCTGCTCATTCCAAAAGAATGCGTGAAGAAACAGATGCATTGCGTGTTCGCCTATCTCAGATGGAGAAGGAGGTTCAATATCTGAACACCGAACTGGAGGCACAGAAAGAAGCCAATATCCAGTCTCCCACCTCTACTATGAAAAATTTAGTGGAAAGACTTAAATCTCAGCTGGCtttgaaggaaaaacaacaaaagGCCCTCAGTAAAGCGCTGCTGGAACTCCGTTCAGAAATGACGTCTCATGCCGAGCAACAAATAATTGCAAGCGCGGCACAAAAGGAAGAAAACCTGAATGTCCAACAAATTGTAGACAAACACACCAAGGATTTGAAGTCCCGGGTTCAAGACCTAAGTGAGGAACTCCAAACGACAAAGGAAAATCTCAAAATATGCAAGACCAGGGAGAACTCTGTGAAAGAAGAGGTGGAAAGTTTGAACAGGGAACTGCAGAGGAGTCACAAGACTCAGAGCAAActgcaggcagagagagatgaGCTGCACAGAGAGAACGGAGAGCTGCAAAAGAAAATTAAGAGGCTCATGGGCGGGTTGCAGAATAAGGCGGATAGTGAAGGAAAGGGGGCCACAGTGGATGAACTTCAAAAGAAGGTACAACGACTGGAGTCTGAACTAGAAAGAAAGACTGCAGCAGAACAAGttgacagaaaaaatataaaagaagaCAAGACatcaaaagaagaaataatCAGGTGggaagaaagcaaaaaatggCAAGGCAGGCTGGAAGGTGTACGGaacaaactgaaagaaaaggagaaagaggtTGAGACTTTAACAAAACAGCTCAGCACCTTAAAGGACCTCTATGCTAGAATTGATCAGGAGAAAGCATCCTTGTTGAAAAAGATCAAAACTCGAGGTGTGACGGTGGATCAGGTTGTTGGAGCTCGAACTCTGGAGTCTGAAAAGGAGATTGAAGAATTGAAGAGGCACAATTCGGAGCTGGagcatcagattgttttaataaaacAACAGCAGGCTTTGCCTCGAGATGTAGCAATGGAAGAACTGAATTTGAAAAATCGATACTTGGAGGAAAAACTGAATTCCTTCGAAAGACAGCTTTCCAAAGAATCTCTTTCAAGACCTTCAACGTCTGGTAGGGGCACTGATACACCATCTCAGAGAGAGCATGAGCTGCAGAGAGAAAACCTCAAGCTATCTTCAGAAAACTTGGAACTGCGATTCCAgttggaacaaacaaacaaggactTGCCCAGATTGAAGGACCAAGTGGCCAACCTTAAAGAGATGTGCGACATCCTAAAGAAGGAGAAGGCTGACCTTGAGAGAAAACTCGGCAACGTCCGTGGGTCTGGACGTAGTGGAAAGACAGTCCCCGAACTGGAAAAAACCATTGGGCTCATGAAGAAAGTGGTGGAGAGAGTCCAAAGAGAAAACGAATCCCTGAAGAAGGCCCCCGGAGTTGTTTCAAGGGACCAGCTAACagctttggaaaatgaaaatgaaaagctcaAGTCTGaatatgaaaaactaaaactacagATGGGAGGTCAGCTGAGCATGAGATATGAATCAAAGACAAAGGGGATGGAGAAGATTATTGCGGAGAATGAGCGTCTACGCATGGAGCTTAAAAAGgaAACAGAAGCAGCTGAAAAATTGAGAATTGCCAAGAATAATGTTGAACTCACAAACGAGAAGCTAATGGTACAGCTGGAGGAGACCAGTAAGAGGCTGAGCTTCGCTGAAACCAGAGGGCCACAGCTCGAGGGAGCAGACAGTAAGAGTTGGAAATCTATTGTGGTAACAAGAATGTATGAGAGTAAAATGAAAGAACTCGAATCTGATATCGTCAGGAAAAACAGCAGTCTTTCAGACCTGAAGCAGCTGTTACGAGAAGCTGCTGAACGggagcagaaaaacaaacatgtcatCAGTGACTTAAAAGAGCAGATTGAGCTGCTGAAACATTTTCCAGAGGAAGCGAAAACAGAGTCAGGTCTTGTAAGGGAGCTGCAGCTTACCAGgCTGACAAACAGTCGtctggagaaagaaaaggtaGAACTTGTTCACCAGCTAGATGTGTATCGACAACAGAGCGGGGCAGTTGACAGTGCTGCTGAGCCTGGATATGACGAACTCCTGCAGAAAGCCATGAAACATGATACATTGATGGAAGATTTAGTTGACATGCAAACCCAGCTTAAGTCTGCAGATCTAGATAAAAGACATTTACAGGAAGAAgtaaaaaagatgaaaaaagaacTGGAAAATTTTGACCCTACATTCTTTGAAGAGATTGAAGATCTGAAATTCAATTACAACTTAGAAGTGAAAAAGAATATTCTTCTGGAGGAGAAACTGAAGACGCTGTCAGACCGGTTTGGACTTCAGGTTGACATTCCAACTAATGTGTCCATCGACTGA
>TU140430
aggCTGACAAACAGTCGtctggagaaagaaaaggtaGAACTTGTTCACCAGCTAGATGTGTATCGACAACAGAGCGGGGCAGTTGACAGTGCTGCTGAGCCTGGATATGACGAACTCCTGCAGAAAGCCATGAAACATGATACATTGATGGAAGATTTAGTTGACATGCAAACCCAGCTTAAGTCTGCAGATCTAGATAAAAGACATTTACAGGAAGAAgtaaaaaagatgaaaaaagaacTGGAAAATTTTGACCCTACATTCTTTGAAGAGATTGAAGATCTGAAATTCAATTACAACTTAGAAGTGAAAAAGAATATTCTTCTGGAGGAGAAACTGAAGACGCTGTCAGACCGGTTTGGACTTCAGGTTGACATTCCAACTAATGTGTCCATCGACTGAAAATGAATCATTCTAACTTAAATCACAACTGGCTTCAtggaaaaacaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatctttatatatacagaagACATTTAGAAATAGGCTTCAgagttgcatttgtttattcatttgtacagttattttaaagcaagtaTTTACAGAGGCTATGTATTTTTCCAACAGagttttgaacattttgtatCTGAAgtaaattcataataaaaatcatcataataaaga

Function

GO:

id name namespace
GO:0021549 cerebellum development biological_process
GO:0043010 camera-type eye development biological_process
GO:0048793 pronephros development biological_process
GO:0042462 eye photoreceptor cell development biological_process
GO:0015031 protein transport biological_process
GO:0007369 gastrulation biological_process
GO:0060271 cilium assembly biological_process
GO:0030916 otic vesicle formation biological_process
GO:0005813 centrosome cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K16533 CEP290, NPHP6; centrosomal protein CEP290

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006754 True 7104 mRNA 0.44 49 18339536 18366562
TU140430 False 668 TUCP 0.35 3 18339270 18341210

Neighbor

gene id symbol gene type direction distance location
AMCG00006756 NA coding downstream 2218 18218916 ~ 18337052 (-)
AMCG00006757 NA coding downstream 120821 18218173 ~ 18218449 (-)
AMCG00006747 mgat4c,LOC107553950,LOC106573111 coding downstream 347371 17988029 ~ 17991899 (-)
AMCG00006745 NA coding downstream 384449 17945016 ~ 17954821 (-)
AMCG00006746 slc6a15,LOC102794091 coding downstream 545811 17771967 ~ 17793459 (-)
AMCG00006755 NA coding upstream 49354 18415916 ~ 18486164 (-)
AMCG00006759 NA coding upstream 169487 18536049 ~ 18603662 (-)
AMCG00006758 LOC107574886,LOC107572944,LOC107679613,LOC106573116,LOC107665720 coding upstream 275822 18642384 ~ 18646768 (-)
AMCG00006760 NA coding upstream 286942 18653504 ~ 18688236 (-)
AMCG00006761 atp2b1,LOC103370548,LOC107690705 coding upstream 330179 18696741 ~ 18712396 (-)
G112020 NA non-coding downstream 1011684 17108977 ~ 17327586 (-)
G112024 LOC103376870 non-coding downstream 1203754 17128317 ~ 17135516 (-)
G111945 rs16,rps16,LOC103382554 non-coding downstream 1437733 16898419 ~ 16901537 (-)
G111940 NA non-coding downstream 1476303 16862677 ~ 16862967 (-)
G111765 NA non-coding downstream 2596555 15742446 ~ 15742715 (-)
G112140 NA non-coding upstream 32701 18399263 ~ 18408777 (-)
G112195 NA non-coding upstream 328510 18695072 ~ 18745217 (-)
G112205 NA non-coding upstream 517066 18883628 ~ 18886046 (-)
G112270 LOC100136012 non-coding upstream 1042257 19408819 ~ 19418420 (-)
G112287 NA non-coding upstream 1148237 19514799 ~ 19515004 (-)
G112059 NA other downstream 705825 17632891 ~ 17633445 (-)
AMCG00006719 NA other downstream 2442401 15881130 ~ 15896869 (-)
G111767 LOC107575789 other downstream 2586035 15752821 ~ 15753235 (-)
G111621 NA other downstream 3585300 14712017 ~ 14753970 (-)
G111489 NA other downstream 3974848 14360228 ~ 14364422 (-)
AMCG00006773 tmem243b,tmem243 other upstream 1256593 19623155 ~ 19631895 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other upstream 1266531 19633093 ~ 19635925 (-)
G112420 NA other upstream 1869294 20235856 ~ 20236206 (-)
AMCG00006807 NA other upstream 2280758 20647320 ~ 20653659 (-)
AMCG00006813 NA other upstream 2487495 20854057 ~ 20964562 (-)

Expression


Co-expression Network