AMCG00006758 (LOC107574886,LOC107572944,LOC107679613,LOC106573116,LOC107665720)


Basic Information

Item Value
gene id AMCG00006758
gene name LOC107574886,LOC107572944,LOC107679613,LOC106573116,LOC107665720
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 18642384 ~ 18646768 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006758
GTGCGCGGCGGCAAGTGTGTCTGTTGGAGAGGACAAAGATCAGTCCAGCAGCATAAAAAGCAAGGACGTTGAGTGAACGAGTGCATTCTGAAATCAGGTCAAGACGCTAAAGGGCTGCAGCGGGTCTGAAACCCACCACCATAGGTACACAACCACCCAAAAAGACGCCTGCACGGGATTGAGATACTGCACACTGCAAGAGTAGCTGCTCCATTCAGGGATTCATTGATGAATGCACGGGCATGCCTTGCAGGATCCTATGAATGGGGACTAGTCTAAGAGACGTCTGCAGTCCAGTATTCATCAGCGCTTTGGcaaattattgatttttCCTCTGCCGGGCACTCATGCTAGATAAATTCAAAAACCTCCCATTTGAATCGGCAATGGCGATCAGCAAGACCGTGGGCTGGCTGAAGGAGCAGCTGCAGAGCCGGAGCGACGCGCTGCTGGTGATGGACTGCCGAGCCCAGGAGCTCTACGAGTCCTCGCATGTGGAGACGGCCATCAACGTGGCCATCCCCGGCCTCATGCTCCGGCGCCTCAAGAAGGGCAACCTGCCCATCAAGTCGCTGCTGGCCAACGGGGAGGACAAGGAGAGGTTCGCCCGGAGGTGCAAGACGGATACGATCGTCCTGTACGACGAGTACAGCCGGGACTGGAACGAGAATGTGGACGGGGGCTCCGTGCTGGGCTTGCTGCTGAGGAGGATGAAGGATGAAGGATACAAGGCTTTCTACTTGGAAGGCggtttcaatacatttcaagcCGAGTTCCCCGGCATGTGCGAGACCAATCTGGACAGCtcttcctgcagcagctcccCCACGGCCCCGGTGCTCGGGCTCGGGGGGCTCCGCATCAGCTCCGATTCCTCCGACATTGAATCGGACATCGACCCCCACAGTGCCACCGACTCGGACGGCAGCCCCCTGTCGAACACGCAGCCCTCCTTCCCCGTGGAAATCTTGCCCCACCTGTACCTGGGCTGTGCCAAGGACTCCACCAACCTGGACATTTTGGAAGAGTACGGCATTAAGTACATCCTCAACGTGACCCCCAATCTGCCCAACCTGTTCGAGAACGCGGGGGAGTTCAAGTACAAGCAGATCCCCATCTCTGACCACTGGAGCCAGAATCTCTCCCAGTTCTTCCCGGAGGCCATCAGCTTTATCGaTGAAGCTCGCAGCAAGAAGTGTGGGGTGCTGGTCCACTGCCTGGCTGGGATAAGCCGGTCGGTCACAGTCACCGTGGCGTACCTGATGCAAAAACTCAACCTGTCGATGAATGACGCCTATGATATCGTGAAGATGAAGAAATCCAACATCTCTCCGAATTTCAACTTCATGGGTCAGCTGCTGGACTTTGAACGGACCCTCGGCCTGAACAGCCCCTGTGACAACCACCGCATCACAACACAACCCTTGTATTTCACCACGCCGACCAATCACAACGTGTTCCAACTCAACCCCCTGGAGTCCACGTGAGACCCGGAGACCCCGACCTCGAGGCGTGGGCTCCTGAAATCATCTTCCGTCTTCTGTCAAGCAACTTGACattatttacacagctgggcTGATATGACAGCTGCTGGGCGTGTTTGCTGAAAAACACGGCATACTAAAGCATAGGAGCAGCTGTTGCAGAGGGAGAAAAGAGCTGTAACTCAGGCTCTCGCTGTCTCTTGGACTCAAAGCGTTTAATTGTCCCAAAggttagaagaaaaacaaaggtgcACAGTTGCATGTGTGCAGCAGACTGGGAAGCTAAGTATTCCAAAGAAAATGGATGGTTGAACTGGACATTTAATTAGCACTTGCACCTGTAGACTTTTTCAAGCTTGGGtgtatttttcttgtcttcAGTGAAGACTAGCCTAGCGTGGGGGGAGAACACCTCactgaatgaaggcagtgttctcaaattctgtttttaatggagTAATGTtgaaagattatatatatatatgagagagagagagatctacaTATGAGTAGCGAAGCATTGCTCTTGTGTGTCAGAATATACCCTTTTAAAGATCAGTGGgtactgtttttaattgtattttttcctctgTTTCATGTAAGCATCCAGAGTATTGATCAATAGATCTGTTTCATATGCCAAAAAGAGACTAGGTTTTcaagattttaaatgtgtatatgtaatatatattttttctggttgAATTTGACCACATTTCTGATGTTTAATATATGGGTTTCATCCACAGGCCTTTTTTTTGTAACTATACACACTTAATTTTATGCCTTAGttctgtaaatacaaatataatgacCATGTTACCCCTAATTGGGAAGTCTGATATGCTTTTCAGATCCCTGAAGTACATTTTtcactgattttaaaattatcaCCACAGCTTTTTTTGTCAAAAGTATACAGATCTACCAAGACACACTGCATcctaaaatacagtatttcatttaaattaataactttaagtgttaaaaaaaaatgtatatctgtcATACACTTTGTAGTGGTGACTTGAGTTCAAATTCCATGGTGCATGCAACTGAATAGATATTTTAGAATTGTTAGTTATAAGATGCAATATCCGATGGGGATTAAAATCGAACCAAAcctttgttttttgggggaacCTAGGAGGTTGAAGACAAGGAATGTAACATTTTGGTAAAGGTTCTGATTGGACTATTCGTATGGTATCTGGATATGCTGACGGCTGTTTCTCTTCAGGGAtcttcaaattcaaatgcaaaagaactacaaatgcaaatgttattttgttaaaaggagaaacaaaattaTGGAACTTGTTTTTCTGCTGCCCTTGAGGAGCTGGCCAATGGAGAGTGACCCTCCCCCTCCGCCTCCATCACCCTGAGGTGTGAAGTGGGGCATTGAGTTCATCTTAagaatgtaaaaacataaattattaataaataattattttgtctatTCTGAA

Function

NR:

description
PREDICTED: dual specificity protein phosphatase 6-like

GO:

id name namespace
GO:0060420 regulation of heart growth biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0070373 negative regulation of ERK1 and ERK2 cascade biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0000188 inactivation of MAPK activity biological_process
GO:0040036 regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0005829 cytosol cellular_component
GO:0017017 MAP kinase tyrosine/serine/threonine phosphatase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K21946 DUSP6; dual specificity phosphatase 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006758 True 2953 mRNA 0.47 4 18642384 18646768

Neighbor

gene id symbol gene type direction distance location
AMCG00006759 NA coding downstream 38722 18536049 ~ 18603662 (-)
AMCG00006755 NA coding downstream 156220 18415916 ~ 18486164 (-)
AMCG00006756 NA coding downstream 305332 18218916 ~ 18337052 (-)
AMCG00006757 NA coding downstream 423935 18218173 ~ 18218449 (-)
AMCG00006747 mgat4c,LOC107553950,LOC106573111 coding downstream 650485 17988029 ~ 17991899 (-)
AMCG00006760 NA coding upstream 6736 18653504 ~ 18688236 (-)
AMCG00006761 atp2b1,LOC103370548,LOC107690705 coding upstream 49973 18696741 ~ 18712396 (-)
AMCG00006766 NA coding upstream 240837 18887605 ~ 18903547 (-)
AMCG00006762 NA coding upstream 268234 18915002 ~ 18920800 (-)
AMCG00006763 NA coding upstream 292382 18939150 ~ 18962560 (-)
G112140 NA non-coding downstream 233607 18399263 ~ 18408777 (-)
G112020 NA non-coding downstream 1314798 17108977 ~ 17327586 (-)
G112024 LOC103376870 non-coding downstream 1506868 17128317 ~ 17135516 (-)
G111945 rs16,rps16,LOC103382554 non-coding downstream 1740847 16898419 ~ 16901537 (-)
G111940 NA non-coding downstream 1779417 16862677 ~ 16862967 (-)
G112195 NA non-coding upstream 48304 18695072 ~ 18745217 (-)
G112205 NA non-coding upstream 236860 18883628 ~ 18886046 (-)
G112270 LOC100136012 non-coding upstream 762051 19408819 ~ 19418420 (-)
G112287 NA non-coding upstream 868031 19514799 ~ 19515004 (-)
G112288 LOC108263977,LOC105018424 non-coding upstream 890437 19537205 ~ 19537793 (-)
AMCG00006754 NA other downstream 275822 18339270 ~ 18366562 (-)
G112059 NA other downstream 1008939 17632891 ~ 17633445 (-)
AMCG00006719 NA other downstream 2745515 15881130 ~ 15896869 (-)
G111767 LOC107575789 other downstream 2889149 15752821 ~ 15753235 (-)
G111621 NA other downstream 3888414 14712017 ~ 14753970 (-)
AMCG00006773 tmem243b,tmem243 other upstream 976387 19623155 ~ 19631895 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other upstream 986325 19633093 ~ 19635925 (-)
G112420 NA other upstream 1589088 20235856 ~ 20236206 (-)
AMCG00006807 NA other upstream 2000552 20647320 ~ 20653659 (-)
AMCG00006813 NA other upstream 2207289 20854057 ~ 20964562 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000055_05450546_05453791 DUS6, DUSP6 coding CI01000055 null 5450179 ~ 5454525 (-)