AMCG00006761 (atp2b1,LOC103370548,LOC107690705)


Basic Information

Item Value
gene id AMCG00006761
gene name atp2b1,LOC103370548,LOC107690705
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 18696741 ~ 18712396 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006761
TTAGGTTTAAGCGGAAATACTGCAGACATTGAAAGAAGGCAAGCAGTGTTTGGACAGAACTTTATACCTCCAAAGAAGCCAAAAACATTTCTACAATTAGTATGGGAAGCCTTGCAAGACGTAACATTAATTATTCTAGAAGTTGCAGCCATAGTTTCATTAGGCCTTTCTTTTTATCACCCTCCAGGTGGCGACTCGGAAGTCTGTGGCACAGCAGCTGGAGGGGTGGAGGACGAAGGGGAATCGGAAGCGGGATGGATCGAAGGGGTGGCCATTCTCCTGTCTGTGATCTGTGTGGTACTAGTAACCGCTTTCAATGACTGGAGTAAAGAGAAACAGTTCCGTGGATTACAAAGCCGAATTGAACAAGAACAGAAATTTACGGTGGTCAGAGGCGGCCAAGTCATCCAGATTCCTGTGTCAGAAATTGTTGTTGGTGACATTGCTCAAGTCAAATATGGTGACCTCCTACCTGCAGACGGTGTTCTAATTCAAGGCAATGATCTTAAAATCGACGAAAGCTCGCTCACCGGGGAGTCTGACCATGTCAAGAAAAATTTAGAAAAGGATCCGTTGCTTTTGTCAGgtACCCATGTAATGGAGGGATCTGGGAAGATGGTTGTCACAGCTGTAGGAGTGAACTCACAAACTGGAATAATCTTCACTTTACTTGGGGCAGGAGAAGATGAtgaaaaagacaaggaaaaggaagaaaaggacaagaaaaaagacaagaaaaGCAAGAAACAAGATGGAACGACTGAAAACCGCAACAAAGCTAAAGCTCAGGATGGAGCTGCCATGGAGATGCAGCCGCTGAAGAGTGAGGATGGAGGAGATGGAGATgacaaggaaaaaagaaaatccaatatgccaaagaaagagaaatctgTTCTTCAAGGGAAGCTTACTAAACTAGCAGTCCAAATTGGCAAAGCAGgGCTGGTGATGTCTGCCATTACCGTCATCattcttgtgttgtttttcgTCATCGACACCTTCTGGATCCAGGGCATTCCGTGGCTCAAGGAGTGCACACCCATTTATATCCAGTATTTTGTGAAGTTCTTCATCATTGGTGTCACTTACCTGAGGGTCTTCCGCTTGCAGTTACTATTTCTCTGGCTTACTCTGTCAAAACATCTCGATGCCTGTGAAACCATGGGAAATGCGACTGCGATCTGTTCTGACAAAACTGGAACTCTAACCATGAACAGAATGACTGTTGTTCAAGCATTCATTGGGGACAGACATTACAGACAGATCCCTGAACCAGGTTCTATTCCTGAGTTCATAATGGACCTCCTTGTTACAGGGATTGGGGTTAACTGTGCTTACACTACTAAAATCCTGCCTCCCGAGAAGGAAGGTGGTCTGCCACGCCATGTAGGGAACAAAACTGAATGTGCCTTGCTGTGGTTCACCCTTGATTTAAAGAGAGACTACCAGGCCGTACGGAATGAAATCCCTGAAGAAAAGCTCTACAAAGTCTACACTTTTAACTCGGTCAGGAAGTCCATGAGCACAGTGCTGAAGAACTCGGATGGAAGCTACCGCATGTTCAGCAAAGGGGCCTCAGAGATCCTCCTGAAGAAGTGTTATAAGATTATCAATGCGAACGGCGAAGCCAAAGTTTTTAGGCCCAGGGATCGGGATGATATGGTGAAGAAAGTTATTGAGCCTATGGCCTCAGAAGGACTGAGAACTATTTGCTTGGCATATAGAGATTTCCCAGCGGGAGAATCGGAGCCCGAATGGGACAACGAGAACGACATCTTAACCAGTCTGACCTGCATTTGTGTCGTGGGGATTGAGGACCCAGTCAGACCTGAGGTTCCAGATGCTATAAAGAAGTGTCAGCGTGCAGGCATCACAGTTCGTATGGTGACAGGGGACAACATAAACACAGCCCGTGCGATCGCCACAAAATGTGGGATTCTGAATCCTGGGGATGACTTTTTGTGCTTGGAAGGCAAGGAATTCAACAGGCGGATACGAAATGAGAAGGGAGAGATCGAGCAGGAGCGCATTGATAAGATCTGGCCTAAGCTCCGAGTGCTAGCAAGATCTTCTCctactgacaaacacacactagtAAAAGGTATCATTGACAGCACGGTAGTAGAACAAAGGCAAGTTGTTGCCGTGACAGGAGATGGTACAAATGATGGACCAGCGCTGAAGAAAGCAGATGTTGGCTTTGCTATGGGCATTGCTGGCACAGATGTTGCAAAAGAAGCCTCCGATATCATCCTCACAGATGACAACTTCAGCAGCATTGTCAAAGCTGTCATGTGGGGAAGAAACGTATATGACAGCATCTCCAAGTTTCTTCAGTTCCAGCTTACTGTCAATATTGTGGCCGTAATTGTTGCTTTCACTGGTGCCTGCATCACACAGGATTCTCCCCTAAAAGCTGTGCAGATGTTGTGGGTAAATCTCATCATGGACACATTTGCCTCTTTGGCTTTGGCCACTGAACCACCCACAGAGTCACTCCTTCTGAGACGACCTTATGGCAGAAATAAGCCTCTCATCTCTCGAACCATGATGAAGAACATCCTCGGGCACGGCGTGTATCAGCTGACGATTATTTTCACTCTGCTGTTTGCTGGAGAGAAGATTTTTGACATTGACAGCGGACGAAATGCACCCCTCCACGCCCCGCCGTCCGAGCACTACACCATCGTCTTCAACACCTTCGTCATGATGCAGCTGTTCAATGAAATCAATGCTCGTAAAATTCACGGGGAGAGAAATGTATTCGAAGGAATCTTTAACAACTTGATCTTCTGTAGCATTGTGTTTGGAACGTTTGTTATACAAATAGTTATTGTCCAATTTGGCGGGAAACCATTCAGCTGCATTGGGCTCACTATTGATCAGTGGTTATGGTGCATCTTCCTGGGCCTTGGCGCACTTCTTTGGGGCCAGTTAATCGCTAGCATTCCTACAAGTCGACTGAAGTTCCTGAAGGAAGCTGGCCATGGCACTCAGAAGGAAGAGATCCCGGATGAGGAATTCGAGGACATGGACATGGAGGAGATTGACCACGCAGAGAGGGAGCTGCGCCGCGGGCAGATACTGTGGTTCCGAGGGCTCAACAGAATCCAGACCCAGATGGATGTAGTGAATGCTTTCCAGAGTGGAAGTTCCTTTCAGGGCGCTCTAAGGCGGCAACCCTCCATCGCCAGCCAACATCATGATATCCGGGTAGTGAATGCATTCCGCAGTTCCCTGTATGAAGGTTTGGAAAAACCCGAATCCCGGAGCTCCATCCACAACTTCATGACCCACCCCGAGTTCCGGATAGAGGACTCTGAGCCCCACATCCCCCTCATCGATGACACCGACGCGGAGGACGATGCCCCCACCAAGCGCAACTCCTCGTCACCGCGCAACTCCACGCCCCCGCGCAACTCCACCCCCCCACGCAACTCCTCCCCCCCACCTTCACCCAATACAAACAATAACGCTGTCGACAGCGGAATCCACCTCGCCCTTGACACGAGCAAGTCGGCTACCTCGTCATCCCCAGGAAGCCCTTTACACAGTCTGGAAACTTCCCTTTGATTGGAGCACAAATGCAGcaactttttttcctttctttttttttttttttaatacacataaCGAAGCTTGTTtcagagggaaaaataaatgtggtatTTGAAGGGAAACTAGATAGCAATTTCCTCTGTATGCATAGCATGTGTTGGACTGAAACAGAAGCAAACATTCATGAGAATGTAGTTtggttttgctgttttgttttgattttttttttttttgtcctcctCCAGAAAATAAAGGAGGCTCTTTATTTCTGCCCCTTCCTCCCCAATAAAACTTTAATGGCAAAAGAGGGGGGTTTATCAATGCAGATTAAAAGtgacctgttttttttgtggggaATTTTCCTTAGTACTGGAGTTCAGCAGgaataaaggaaaaactgaaatgacagAACCTTTGGTTGCTCATAATCTGaattgttatatatttgatttcttGGCCCTTGCTCATTTGAATACTTTAATTTCTGCTATTGGCTgttaatattttgaattatttatgttcTTAAGAAAAGCAGATCTGTTTACAAGGTTTGTAGATACTTATTTCTGTTCGTAGATGAAAAGCTTTCCGACACGTCATgcagataaataaatggaaTGAAAGTAATCGTTCAGATACTGCTGtattttcaggaaaaaaagGGTGTTTCTATTGAAACTGTACTATTTTGCCTGcaagttttatttgttaaatatttgtagATAAATAGCTAATACTTATAGCCAAATAGATAACACTAAGGCTTGTATAGCAATGAGCAGAGGTGTTGTAGTACGTtggggcagg

Function

symbol description
atp2b1 Enables P-type calcium transporter activity involved in regulation of presynaptic cytosolic calcium ion concentration. Involved in calcium ion export across plasma membrane; negative regulation of cytosolic calcium ion concentration; and regulation of cellular response to insulin stimulus. Located in nucleoplasm and plasma membrane. Is active in GABA-ergic synapse and glutamatergic synapse.

NR:

description
PREDICTED: plasma membrane calcium-transporting ATPase 1 isoform X1

GO: NA

KEGG:

id description
K05850 ATP2B; P-type Ca2+ transporter type 2B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006761 True 4365 mRNA 0.45 21 18696741 18712396

Neighbor

gene id symbol gene type direction distance location
AMCG00006760 NA coding downstream 8505 18653504 ~ 18688236 (-)
AMCG00006758 LOC107574886,LOC107572944,LOC107679613,LOC106573116,LOC107665720 coding downstream 49973 18642384 ~ 18646768 (-)
AMCG00006759 NA coding downstream 93079 18536049 ~ 18603662 (-)
AMCG00006755 NA coding downstream 210577 18415916 ~ 18486164 (-)
AMCG00006756 NA coding downstream 359689 18218916 ~ 18337052 (-)
AMCG00006766 NA coding upstream 175209 18887605 ~ 18903547 (-)
AMCG00006762 NA coding upstream 202606 18915002 ~ 18920800 (-)
AMCG00006763 NA coding upstream 226754 18939150 ~ 18962560 (-)
AMCG00006764 NA coding upstream 288531 19000927 ~ 19002781 (-)
AMCG00006765 NA coding upstream 293984 19006380 ~ 19046061 (-)
G112140 NA non-coding downstream 287964 18399263 ~ 18408777 (-)
G112020 NA non-coding downstream 1369155 17108977 ~ 17327586 (-)
G112024 LOC103376870 non-coding downstream 1561225 17128317 ~ 17135516 (-)
G111945 rs16,rps16,LOC103382554 non-coding downstream 1795204 16898419 ~ 16901537 (-)
G111940 NA non-coding downstream 1833774 16862677 ~ 16862967 (-)
G112205 NA non-coding upstream 171232 18883628 ~ 18886046 (-)
G112270 LOC100136012 non-coding upstream 696423 19408819 ~ 19418420 (-)
G112287 NA non-coding upstream 802403 19514799 ~ 19515004 (-)
G112288 LOC108263977,LOC105018424 non-coding upstream 824809 19537205 ~ 19537793 (-)
G112289 grm3,LOC108263977,LOC108444204 non-coding upstream 828707 19541103 ~ 19541968 (-)
AMCG00006754 NA other downstream 330179 18339270 ~ 18366562 (-)
G112059 NA other downstream 1063296 17632891 ~ 17633445 (-)
AMCG00006719 NA other downstream 2799872 15881130 ~ 15896869 (-)
G111767 LOC107575789 other downstream 2943506 15752821 ~ 15753235 (-)
G111621 NA other downstream 3942771 14712017 ~ 14753970 (-)
AMCG00006773 tmem243b,tmem243 other upstream 910759 19623155 ~ 19631895 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other upstream 920697 19633093 ~ 19635925 (-)
G112420 NA other upstream 1523460 20235856 ~ 20236206 (-)
AMCG00006807 NA other upstream 1934924 20647320 ~ 20653659 (-)
AMCG00006813 NA other upstream 2141661 20854057 ~ 20964562 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G277199 NA non-coding NC_047612.1 CM018558.1 5961154 ~ 5981665 (+)