AMCG00006762


Basic Information

Item Value
gene id AMCG00006762
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 18915002 ~ 18920800 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006762
aaaaaaaaaaaaaaaaaggcacggccaggtatatatatatgtattgcttCTCTTGTAAGACAACAAAGCTTCATCCCAGAAGCAGATATATGACCCTTGTGCACCTGCACCTCGTTAGGAAGCCATATATTTCTTATGCCATACCGTAAGCCCATATTGATGACATAGCTGCTTTATAGTGCAGCGTAACTACATTTGGTTTGCTGTGTTTTGTCAGCTAAGGACCACAGAGGTCTGGCAAAGGCTGCTTGCTCTCTCCTGAGCCCTTCTCTCTGAACGCACACTACCTGACTGCACTGTTTCTGCCTGTGCTGCTGCTCCTGAGGTGGGGAAATTGGTCAATCCAAAGAGGTGTCAAGCCCGGAGAAGAATTCAATACACTGCTTCAAGATGAATAATTTCCATCTCCCACTTTTAGCAGCATTGTTCAGCTGTGTTCTGTGCCAGTATGATTATGTATACTATGATCATCCAATATCCATGCTGGGACCCTCTGGACCTAACTGCCCACAGGAGTGTGAATGCCCTGTCAATTTCCCAACCGCCATGTATTGTGACAACCGCAAACTGAAGTACATACCCATAGTGCCTACTGGAATCAAATACCTGTACCTGCAAGGTAACCAAATCGATTCAATCAAGAGTGGCGTTTTTGATAATGCCACAGATCTCTCCTGGCTCATCCTTGACAACAATCAAATTGTTAACAGCAATATTGCCAAAAATACCTTTAACAAGCTGAAATCCTTGCAAAAGCTTTACATGAGCTTTAACAATCTCACAGAGCCTGTGGGCCCTCTCCCCAAGACCCTCAATGAGCTCAAATTGGTTGGGAACAAGCTCTCTAAGTTCCCATCCAGCCTCTTAGATGGACTGGAGAATCTCACTTCCGTTCACCTTCAAGAAAATCAGCTGAAAGACGATGCCATCGCAGGAGCTTTTAAAGGAGTCAAAGGCCTTGAGTACTTGGACATAAGccataacaaaattaaaagattgCCTCTGGATATGCCAAACTCATTGGAGACGTTCTATGCTGACCACAACAACATCACCAGCATCCCAAGCGGTTACTTGCAGAAATTTCCCAAACTGCAGTATCTGCGAATCTCCCACAATCAGCTGGTGGATTCTGGCATCCCTGACAATGTCTTCAACATCTCGTCTCTAATTGAACTGGACCTGTCTTTCAATAAGCTCAAGTCCATCCCAGCTGTCAACGAAAACCTGGAGAATCTGTACTTGCAAGCCAACCAAATCGACAagttTGATCTGGTGAGCTTCTGCAAGGTCACCGGGCCTCTAAACTACTCCAGACTGAGACACCTGCGTCTGGATGGGAACAACCTGACCCAGGCCAGCCTGCCATTTGACATGGCCAACTGCCTCCGCCAAGCCGCTGAAGTGATCCTAAACTAATGGCCTTGTTGAACCTTTATCATACTTTGTAAAGCCAGGTGGATGTCTTAAGCCATGTCAAGCTTTTCCACTGAGTTCAAATCAGTAAACAGAGAGTTGAACAAAAGGTTTATATAAAAGGCTTTGAACAATGTCTGAGTTCTTAATTTGGTTCTGCTTTAAATAGCATCCAATCCTGAGAGTCCtttcaaaattgtgtttttttaaagaccCTTTTAAATTCCCATACCCATCTGAACAATGCTTGTCCACACCTAGACAACTATGAAATatgattacataaataaaaaagtagatTACCTTATTTAGGCACCATTCAAAGAACTAATTTGCTGACTcgcacatttttcaaaagcttttgtgAGAATACTGTCagttctattttaattaaaagtaactAAATGCTACTAAACAATGCTAACAATAGAGGTTCAGGATTACGATTTGCATGAACCATTTATCTGTCACCTGATAACAAATATCTTGGAAAATATGTACTATTAAAGTACTCTTGAATATAGTATTGATTTCATACCAGCAGATAAGATAGTATGTTTTTCTTAAGGAttgtttgttgttcttaatGTCAGcgcttttctctttttgttctttgatttaaaactattttgtagtattatgtttttatgtacaCAGGAAAGCTTTTCAAACATGTTATAGCTGTGATTTTCTAGTACTGCAGGGAGAGAAAAGCTAAACAGTAACTGGGACCATTTAACATACAGGTATGTTAAGTGTGTGGTAGCACTAAATGTCTACAAGAAGGCCaacataaacacagaataagCATTAATTATCCTTCTTGGATAGAAGAATCAATTGAGTAAAACTATATGTGGACCATGCAATCTAAAATCATTATAATGAAGAATCACCAAAGCAGCATGGTGGCATAATCTGAGGCCTATagataaatatagaaaaatgaaCTGTTTAATCCTAATGTATGTCTTTTTGTATCCTGAGCTATGAAACAAAGTTGAATaccaaataaatatgatttgtaattaaaataattcaggcATTCATTTACTACTTTGCAGTTGCTCCATGCTTATTGCATTTAGACCATAGTCATCAAGTATTCATAAACAGATTTTGCTTTCAGTCCATTTTATACTATGTAAACATATATGCAACATTTTCCATTACTTGCATGCCTCTCGTGGTAACtttgtaatataataaaacatagcaatttaAGTTGTTGTGTTTATGATTACCTTGTTTGTCATGGTGTACACAAACTTGTAGTAATGTAGTGGATTGCTTAATAACTTcagcacaaattaaatcttgaaATCATCAATGTACTGGATTCCAATGTTTGCTAAATAGGTACTACTGCCAATTAATTTTACTCACTGTAATCTTGTCAATCTCACACTATGTAcgtattaaaagaaaactacaggAACGTAGTAATAACTTCAATAATAATCTCTTTGAAAAGCTACAGATATTGAACGGTACAatttgtgttgctaacaaaaatacaaacattacagGTATCTCTTGATGTAATTAACCTTTTCTTagtatttaaagatatctgtttaatgtacaaatgtacgACTTCTCTCAGATAGTGTGTGCATCATGGGTATGTTGTTATGCATTACGgataatttatataattggcatttttctgttatttgtgtTAATCTTTTTTGCTTATCTGTATTGCATGTCCTACCTATGTACTTGTGGCTGTTTCTCCTTCTGGTAATTTTCTcggtaaataaaatatttctgaacaAACAGCTTTCAGTAGGTATGT

Function

GO:

id name namespace
GO:0030199 collagen fibril organization biological_process
GO:0007601 visual perception biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process

KEGG:

id description
K08122 LUM; lumican

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006762 True 3217 mRNA 0.38 3 18915002 18920800

Neighbor

gene id symbol gene type direction distance location
AMCG00006766 NA coding downstream 11455 18887605 ~ 18903547 (-)
AMCG00006761 atp2b1,LOC103370548,LOC107690705 coding downstream 202606 18696741 ~ 18712396 (-)
AMCG00006760 NA coding downstream 226766 18653504 ~ 18688236 (-)
AMCG00006758 LOC107574886,LOC107572944,LOC107679613,LOC106573116,LOC107665720 coding downstream 268234 18642384 ~ 18646768 (-)
AMCG00006759 NA coding downstream 311340 18536049 ~ 18603662 (-)
AMCG00006763 NA coding upstream 18350 18939150 ~ 18962560 (-)
AMCG00006764 NA coding upstream 80127 19000927 ~ 19002781 (-)
AMCG00006765 NA coding upstream 85580 19006380 ~ 19046061 (-)
AMCG00006767 NA coding upstream 174736 19095536 ~ 19134727 (-)
AMCG00006768 NA coding upstream 386331 19307131 ~ 19336296 (-)
G112205 NA non-coding downstream 28956 18883628 ~ 18886046 (-)
G112195 NA non-coding downstream 169785 18695072 ~ 18745217 (-)
G112140 NA non-coding downstream 506225 18399263 ~ 18408777 (-)
G112020 NA non-coding downstream 1587416 17108977 ~ 17327586 (-)
G112270 LOC100136012 non-coding upstream 488019 19408819 ~ 19418420 (-)
G112287 NA non-coding upstream 593999 19514799 ~ 19515004 (-)
G112288 LOC108263977,LOC105018424 non-coding upstream 616405 19537205 ~ 19537793 (-)
G112289 grm3,LOC108263977,LOC108444204 non-coding upstream 620303 19541103 ~ 19541968 (-)
G112290 grm3,LOC107090533,LOC106924857 non-coding upstream 644156 19564956 ~ 19566015 (-)
AMCG00006754 NA other downstream 548440 18339270 ~ 18366562 (-)
G112059 NA other downstream 1281557 17632891 ~ 17633445 (-)
AMCG00006719 NA other downstream 3018133 15881130 ~ 15896869 (-)
G111767 LOC107575789 other downstream 3161767 15752821 ~ 15753235 (-)
G111621 NA other downstream 4161032 14712017 ~ 14753970 (-)
AMCG00006773 tmem243b,tmem243 other upstream 702355 19623155 ~ 19631895 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other upstream 712293 19633093 ~ 19635925 (-)
G112420 NA other upstream 1315056 20235856 ~ 20236206 (-)
AMCG00006807 NA other upstream 1726520 20647320 ~ 20653659 (-)
AMCG00006813 NA other upstream 1933257 20854057 ~ 20964562 (-)

Expression


Co-expression Network