AMCG00006763


Basic Information

Item Value
gene id AMCG00006763
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 18939150 ~ 18962560 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006763
GTGGGTGTCAGCCTGTGCTGTATTCATTGACGGAGACTTgcctcttttccttttttcctccttcttgtGGTTCCTTCTCCTTTGGAAAAGGAGCACAGAGGGAGTTATCTACCAATTGTCATCCATTGAAAGAGGACTGACGGGACCCTCCCTTTCTTTGCCCCCACCTCCTCGTCCAGCTTCACACACCTGCTTTGCTTTGGCTGAGCACTTTTTTAGTGCAATTACGCCTCGGCCTTGAGAGCTGCACTTCTAAAACCCCCACTGGATTTGGGAAACAAAacacccccaaaaaacaaaagaacacagGTCTTATCAGCATCTGCACTGACAGGAAAATGAAGTCAGCCTATATTTTCCTACTACTGGTAACAGTTTGCTGGGCCCTGCCTTTCCAGCAGgtagatttatttgatttcatgaATGATGATGGTTCTGGGTTAAACTCAACTGATGAATCACTAATACCAGCTGAGTCAACATGTCCCTTTAAATGCCAGTGCCACCTTCGGGTTGTGCAGTGCTCTGATTTAGACTTGCAGAACAACAAAATcacagaaattaaagaaaatgactTCAAGAGTCTGAGGATTCTACATGCATTGATTCTTGTCAACAACAAGATCACCATCATTCACCCCAAAGCGTTCCTGCCTCTGGGGAAGCTGCAGAGACTCTACCTGTCTAAGAACCTACTGAAGGAAATGCCCGTGAACATGCCCAAGAACCTGCAGGAGCTGCGCATTCACGAAAAcgaaataaccaaaataaagaaGTCGTCATTCGAGGGAATGGCTCAAGTCATTGTGATGGAGCTGGGCTCAAACCCACTGAAGAGCGCAGGAGTTGACATCGGTGCTTTCCAAGACCTCAAAAAGCTGTCCTACATCCGAATTGCAGACACCAACATCACTTCTATACCTAAAGGTCTTCCCAGTTCCCTGTCTGAGCTCCATTTGGATAGTAATAAAATTTCCAAAGTAGATGCTGACAGTCTGAAGGGCCTCAAAAATCTGGCAAAACTCGGTCTGAGCTTCAATGAGATTTCCACTGTGGAGAACGGGTCCCTTGCTAACGTGCCCCATTTGAGAGAGCTGCATCTGGACAACAATGGTCTCACTAGTGTGCCCCCTGGCCTGCCAGATCACAAATACATCCAGGTCATCTATCTCCACAACAACAAGATTGCTGCAGTGGGAACAGGGGACTTCTGCCCTCCAGGCTACAACACAAAGAAGGCCATGTACTCTGGCATCAGCCTTTTCAGCAACCCTGTGCCTTACTGGGAGGTCCAGCCCATCACCTTCCGCTGTGTCTTTGACCGTTCTGCCATCCAGCTTGGAAACTACAGGAAGAAATAAACCTGCGTATCAGTCACCATGCTGACCCTCCCCTAGGCCCAGTCCTTACATCGTGTTTTAAGAGAATCGCCAttggtattgtatttttatattccaagAATACCCATTACTGGAATCTGGCATTTTGTCATACAAATTGTTGACGAACATCACAAAAAGAAGATGTAAAAAGTATCCCGCCATTttaggaaacaaaatgtattacacatttaaCCCTTCATTATTCTTGTaaagcagaatttaaaacaaaataaccagaGGTTGTCATTAATGATCCATTAGTGAACCCATACATGTTTTCAACACATTCCAGATGATAATATCCCAGAGAAAGTTTGGTCAGCTGTCCTGCTGAGCAGGCTGCTAAAGGGGTTAACCTGTGTCTAAAGGAACCCTTAGCTAAAGACGGTATAGCTATACTAGTGTTGTATGAAATGTGTTGTGCTAGTATGAATGAAATGTACCACTGAGATACAGAGTGCACCCTGTAGTGTACTACTTTTCATTCTgtagaaaaaaatgatttattatgtcacatttgaaaacattttatttcctctgcTTGCTTTTGAgtgttatttctttttctttttttttttgtcgtccACCTATAATTTTTCTAAAGAACTTTAAGCACATTTCCAAATGGCCACTGTAAAGTCATTTAGACCAAATCCAGGATAAATGCAGTTCTGAAAGCTGTagaataaacaatatacacataCCCATAAATGTGTGGTCAGAAGAACTATACGCAtgctttttcattgtatttcccAGGTGTTTACGGACTGCAGCtttgataatattttaatgtctgGAGTGGAATGGAGACAGGTGGCTCATCACACCCACCATGCTCATATTTGAATGTTATATGTATAGATACTGTATATACAAGCTGTATAAACACCTTATTGCTTTTAAGCACTAGCACTTACAGTACATTAGTTTAATAtatcagcaaaacaaaagtaaaccaTGTGGGTTTGGGTGGTTCAGTTCAGTTGTCCTGAGCGAAATAAAGGTTATAGAACATCTACGGTGTCACAAACAAGTCTGTGATCCACAATGAGGGCATTGCTTTATTATGCATAACTTAACTTgcgttttttatttgtattcttcgTTAGGTATGACAACATTGGGCTTAATTAGCAACAGTGCCATCAGATACAAAGAGACTGTCCATTCTTGGGTTTCCCTGCCATTTATTCCCTGGAATCTACAAAATGAAATTGCAAAATTGAATATTGATGTAATAATGGCTAATACCTACTGGGGACTGAGCTCAGACTACCTTTCATTTTGGGTTCAAACAAAGCAGGAAGAATAGAGAACACATGCAGTCTGTTACCCAGTGCTATGTTGATGAGGTTATTAACCAAATGAAAcattgaatatttttaatttttatcaGAATAAAAGAGTAGTGTTAATCATATgcatttttcctgttatttctaACACGTTCTTCATCCGATTAAGTGTATTCTCTGCAGTCACCCCTGCTTCTGTTTAATAGCAGATAGAAATctatttaatggaaaaaataaatgctgaattaGATCAAACCTTTTAGGGAAACACTATTggttaaacaataataaaccatAATAATGTTTCATTCCAACACATGAATACAACCAAATGTTTCATAACACTGGTTaagatgattattttaataaaagtctGAAAAAAGCTCTACCTGCTTTTTATCTATTTTGGTGGATTTAGAAATATATGAGAGATAAGTCTGAAcatttataacaaataataatcttaacaaATGTGTATGAATTGAACATTTGCAGCctttttaacaaatatacatttttggcTACAGTATTTAGTAATGATGTATGAATGCACAGAAACCATGGTGTAACAATGAGTTGCTTCCTCTGTGTATTTcctaacaatatattttgtgttttcagacTTTTCTGTAACATGTGCTTAGCAAGACTCACACTAAGTAAAGATAATCTCAAAGAATACATATGtctttacattatattacaacaagaatacaaaacacaatgtccATTAAATTCCAGTTAATTGCAAGAACACCTTTTGGAGTTAATTTCACTTTCCCTTACACAGTCCCTGAACATTTTGCTTTACATATTAATTGTGAAGAATAATATGAATTTCTTCATTTAGCCTACTTTTTTCTGGAATGGCAAATTACACTGTTGTAGCTGCCTTTGTAGAATTGTGTACCTTTTGCACAATCTAGAAATTAGTTCTGTAAATATGTTactattttagttatttatttagttattattaactTGTGTAGATAAACTGCTCAGCCATTTTTAACCCTTGACCCATCTGAAGATGTATGGCATCtggaatgaataataatactgatattaTTAAAC

Function

GO:

id name namespace
GO:0050654 chondroitin sulfate proteoglycan metabolic process biological_process
GO:0051216 cartilage development biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0005518 collagen binding molecular_function

KEGG:

id description
K04660 DCN; decorin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006763 True 3754 mRNA 0.38 8 18939150 18962560

Neighbor

gene id symbol gene type direction distance location
AMCG00006762 NA coding downstream 18350 18915002 ~ 18920800 (-)
AMCG00006766 NA coding downstream 35603 18887605 ~ 18903547 (-)
AMCG00006761 atp2b1,LOC103370548,LOC107690705 coding downstream 226754 18696741 ~ 18712396 (-)
AMCG00006760 NA coding downstream 250914 18653504 ~ 18688236 (-)
AMCG00006758 LOC107574886,LOC107572944,LOC107679613,LOC106573116,LOC107665720 coding downstream 292382 18642384 ~ 18646768 (-)
AMCG00006764 NA coding upstream 38367 19000927 ~ 19002781 (-)
AMCG00006765 NA coding upstream 43820 19006380 ~ 19046061 (-)
AMCG00006767 NA coding upstream 132976 19095536 ~ 19134727 (-)
AMCG00006768 NA coding upstream 344571 19307131 ~ 19336296 (-)
AMCG00006775 NA coding upstream 440721 19403281 ~ 19407976 (-)
G112205 NA non-coding downstream 53104 18883628 ~ 18886046 (-)
G112195 NA non-coding downstream 193933 18695072 ~ 18745217 (-)
G112140 NA non-coding downstream 530373 18399263 ~ 18408777 (-)
G112020 NA non-coding downstream 1611564 17108977 ~ 17327586 (-)
G112270 LOC100136012 non-coding upstream 446259 19408819 ~ 19418420 (-)
G112287 NA non-coding upstream 552239 19514799 ~ 19515004 (-)
G112288 LOC108263977,LOC105018424 non-coding upstream 574645 19537205 ~ 19537793 (-)
G112289 grm3,LOC108263977,LOC108444204 non-coding upstream 578543 19541103 ~ 19541968 (-)
G112290 grm3,LOC107090533,LOC106924857 non-coding upstream 602396 19564956 ~ 19566015 (-)
AMCG00006754 NA other downstream 572588 18339270 ~ 18366562 (-)
G112059 NA other downstream 1305705 17632891 ~ 17633445 (-)
AMCG00006719 NA other downstream 3042281 15881130 ~ 15896869 (-)
G111767 LOC107575789 other downstream 3185915 15752821 ~ 15753235 (-)
G111621 NA other downstream 4185180 14712017 ~ 14753970 (-)
AMCG00006773 tmem243b,tmem243 other upstream 660595 19623155 ~ 19631895 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other upstream 670533 19633093 ~ 19635925 (-)
G112420 NA other upstream 1273296 20235856 ~ 20236206 (-)
AMCG00006807 NA other upstream 1684760 20647320 ~ 20653659 (-)
AMCG00006813 NA other upstream 1891497 20854057 ~ 20964562 (-)

Expression


Co-expression Network