AMCG00006768


Basic Information

Item Value
gene id AMCG00006768
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19307131 ~ 19336296 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006768
CTGCTGTTCTCAAATAGCTCCATCCCATTCCTGGATTCTAGTGAAGGGCTTCAATTTCAAACTCTTCTACTGGACGAGGAAAGGGGGCGCCTTCTGCTGGGAGCCAAAGATCACATCTTTCTGCTTGACTTGGAACATTTTAACAAGAACCTGCGGAAGATTCACTGGCCTGCATCTAAAGAAAGAGTGGAACTGTGTAAACTTACAGGGAAAAACGTGCATACAGAGTGTGCAAATTTCATCCGCGTTCTCCACAACTATAACAAGACTCACGTGTACGCCTGTGGCACTGGGGCTTTCCATCCTGTGTGCGCCTTCATTGAAATTGGAGGGCGTGGAGAGGAaaccacatttgttttgaacACACACAGTATTGAATCGGGACGACTGAAATGTCCATTTGATCCATGGCAGCCATTTGCTTCAGTTTTAACAGATGAATACTTGTATGCTGGAACCGCATCTGATTTTCTGGGCAAAGACACAACTTTCACTCGTTCTCTCGGCCCCCCGAATGATCGCCATTACATAAGGACGGACATCTCTGAACATTATTGGATCAATGaGGCAAAGTTCATTGCAGCCCACCCTGTTGCGGACACCTACAACCCGGATGATGATAAGATTTACTTCTTCTTTCGAGAGGCTTCCAGAGAGGGTATCCCGAGTGATAAAAGTGTCTTCTCCAGAGTTGCTAGAGTCTGTAAGaatgATGTAGGAGGTCTCAGGAGCCTAACTAACAAGTGGACAACATTTCTGAAAGCTAGACTGGTTTGCTCCATTCCTGGATCTGACGGTGTTGATACCCACTTTGATGAATTGCaggACATTTTCCTGCTTTCCACAAAAGATGATAGAAACCCAGTCGTGTATGGCGTCTTTACAACAACAAGTATGGCGGATATTCGTGCCGTCTTCAATGGACCGTATGCTCATAAAGACGGGCCGGACCATCGCTGGGTTGAGTATGAGGGGAAGATACCGTATCCACGACCGGGCACATGTCCAAGTAAGACGTATGATCCCcaaataaagacaacaaaagACTTTCCTGATGATGTCATCAGCTTCATTAAATACCACCCCATGATGTTTAAACCGGTTTACCCGATCACTGGAGAGCCTGTGTTCATAAGGACGAATGTGGATTATAGGCTGACCCAGATTGTGGTGGATCGTGTTGTTGCAGAAGATGGAAAATACGCCGTCATGTTTTTGGGGACAGATGCAGGGACTGTGTTAAAAGTTGTGAGCATAACACAAGAGAACTGGCTCACAGAagaggttgtcctggaagaactGCAGGTGTTTAAGgTTCCTTCACCCATTCTGACTATGGAGATATCCTCCAAACAGcagCAGTTATATATCGGTTCCAGGGATGGGCTGGTTCAAGTCTCGCTTCACAGATGTCACATTTACGGGAAGGTCTGCGCTGAATGCTGTCTTGCAAGGGATCCGTATTGTGCATGGGATGGATATTCATGTTCGAGATATGTCCCGGCTTCTAAAAGAAGAGCAAGAAGACAAGATATAAAACATGGTGATCCTTCAAGCCAGTGTTGGGACATAGAGGATACTTTGGCTAATGAACAAGCTGAAGAAAAGATCATGTTTGGTGTTGAACATAATTCAACCTTCCTGGAATGTATCCCAAAGTCTCAGCAGGCATCCATCAGGTGGTTTCTGCAGAGGTCTGGGACTGACTTTCGGGAAGAGGTAAAACCTGACGAAAGGGTGATGAACACCGATCTGGGTCTGCTGATTCGCTCTCTGCACAGAAGGGATTCAGGAACATATTACTGCACTGCCCAAGAGCACGCGTTCGCCCACACCATCCTCCGGCTGAATCTAAAAGTGATTGAAAACGGCCAAATGGAAATCAAGCAGGCCAAAGCAGAGGACCAGGAAGGGCGCAGTCGAGACAGCAGCGTAGATTCCCATCTGGCCTCCGAATCCCGCTACCGATACAAGGACTACCTCCGGCTTGTTAGCCACCCTCTCTTCACGCTGGACGAGTACTGTGAACAAATGTGGTACCGAGAGAAACGgcgacagaaaaacaaaagctcgTCTGGGAAGTGGAAGCATATGCAGGAGTTAAAGAAGAGCAGAAACAGACGGCATCACACACAAGGCCACAAGCCTGAGTCCGCTGACACA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06840 SEMA3; semaphorin 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006768 True 2163 mRNA 0.47 16 19307131 19336296

Neighbor

gene id symbol gene type direction distance location
AMCG00006767 NA coding downstream 172404 19095536 ~ 19134727 (-)
AMCG00006765 NA coding downstream 261070 19006380 ~ 19046061 (-)
AMCG00006764 NA coding downstream 304350 19000927 ~ 19002781 (-)
AMCG00006763 NA coding downstream 344571 18939150 ~ 18962560 (-)
AMCG00006762 NA coding downstream 386331 18915002 ~ 18920800 (-)
AMCG00006775 NA coding upstream 66985 19403281 ~ 19407976 (-)
AMCG00006776 NA coding upstream 233438 19569734 ~ 19593231 (-)
AMCG00006777 LOC107743993 coding upstream 307322 19643618 ~ 19646890 (-)
AMCG00006780 NA coding upstream 343305 19679601 ~ 19781353 (-)
AMCG00006785 prpf18 coding upstream 604761 19941057 ~ 19947697 (-)
G112205 NA non-coding downstream 421085 18883628 ~ 18886046 (-)
G112195 NA non-coding downstream 561914 18695072 ~ 18745217 (-)
G112140 NA non-coding downstream 898354 18399263 ~ 18408777 (-)
G112020 NA non-coding downstream 1979545 17108977 ~ 17327586 (-)
G112270 LOC100136012 non-coding upstream 72523 19408819 ~ 19418420 (-)
G112287 NA non-coding upstream 178503 19514799 ~ 19515004 (-)
G112288 LOC108263977,LOC105018424 non-coding upstream 200909 19537205 ~ 19537793 (-)
G112289 grm3,LOC108263977,LOC108444204 non-coding upstream 204807 19541103 ~ 19541968 (-)
G112290 grm3,LOC107090533,LOC106924857 non-coding upstream 228660 19564956 ~ 19566015 (-)
AMCG00006754 NA other downstream 940569 18339270 ~ 18366562 (-)
G112059 NA other downstream 1673686 17632891 ~ 17633445 (-)
AMCG00006719 NA other downstream 3410262 15881130 ~ 15896869 (-)
G111767 LOC107575789 other downstream 3553896 15752821 ~ 15753235 (-)
G111621 NA other downstream 4553161 14712017 ~ 14753970 (-)
AMCG00006773 tmem243b,tmem243 other upstream 286859 19623155 ~ 19631895 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other upstream 296797 19633093 ~ 19635925 (-)
G112420 NA other upstream 899560 20235856 ~ 20236206 (-)
AMCG00006807 NA other upstream 1311024 20647320 ~ 20653659 (-)
AMCG00006813 NA other upstream 1517761 20854057 ~ 20964562 (-)

Expression


Co-expression Network