AMCG00006770 (LOC106594134)


Basic Information

Item Value
gene id AMCG00006770
gene name LOC106594134
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19611319 ~ 19621286 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006770
CGGTACAGTCACTTCCGGTATCTGGCGGCGAGCTCGGCGTGTTCCTCCATCCTGGCATTTCGGCTCTTCATCCTGGTCCTGCGAAGTGCCCGGACCCAGAGCAGGAAgttgaGTATGAACACAATTGAGGATGAGTCAGGCACAGTGACTTTGGAAACCGTAAACTCAGTTACATTAACTCAGGACACTGACGGGAGCATTATACTCCACTGCCCGCAGAATGACACTGAAGACCTGGAGTCGGATGAGAGTTTAGAGACTTCGCACAAGAGACTGCGCTTATCCACAGAAGATGACCAACATTTGTCTGGATCCGCACCGAGGATTTCGGTTGTCACACTCCCCATTTCAGAGAACGATGAGAGTTTTGAGGTGACAATGACAGCCACCACAGAGATGACGGAGAGTGACATCAGTGATGGGGCTGTGGCACAGATTCAGATTCTTCAGAATGATGGATCACTGTCTCCCCAAAAGACGGAGGATGTGTCCCCTGTCAGCCAAGCTTGGTTCACTACTAAAGAAGATAAGGATTCCCTAGTGAATAAAGGTCATAAGTGGAAACAGGGAATGTGGTCTAAGGAGGAGATAGATATCCTCATGAGCAACATCGATCAATATTTAAAGAATCGGGGAATCCAGGACCCCACAGAGATTATCTTTGAAATGTCCAAGGACGAGAGGAAGGATTTCTACAGGAGCATTGCCTGGGGGCTCAACCGCCCCCTCTTTGCAGTTTATAGACGAGTTCTTCGCATGTATGATAACAGAAACCACGTTGGGAAGTACACCCCTGAAGAAATCGACAAGCTGAAAGAACTAAGGGAAAAGCATGGCAACGATTGGGCTACCATTGGTGCCGCGCTGGGGAGAAGTGCGTCGTCTGTAAAGGACCGGTGTCGGCTAATGAAGGACACTTGCAATACGGGAAAGTGGACCGAAGACGAGGAGCGCAGGCTGGCGGAGGTGGTCCACGAGCTCACGGGCACGGAGCCCGGCCACACCGTCACCCAGGGGGTCTCCTGGGCTTCGGTGGCCGAACTGGTGGGCACTCGCTCTGAGAAGCAGTGTCGCTCCAAGTGGCTGAACTACCTCAACTGGAAGCAGAGCGGCGGCACGGAGTGGACGAAGGAGGACGACATGAATTTAATCAAACGGATTTCTGAACTGGAGGTGGCGGATGAAAATGACATTAACTGGGACATCCTGTCTGGCGGCTGGAGCAGCGTCCGCTCCCCTCAGTGGCTGCGGAGCAAATGGTGGACGATTAAAAGACAAGTCTCGAACCACAAGGACCTTCCTTTCCCTGttcTTCTCAAAGGCCTCCAGGATCTGGTAGAGAACCAACAGCCGGACAGTAAATTCGGTCTGGGGTCGCGGGCCGGCAGCACCTCTCCCTCCGCGATGCAGCAGGTGCAAATCCGAGTGGCTCACCTGGAGGAGAGCAACAGCATCTCTCCCAACCCGCTGACAGCCCTGCAGATCCCCGTGCAGATCCCAGTGCAGATCACACATGTCTCTTCTTCAGATACCTCAGTTGCTGCTAATGACACAGAGACAATAACACTAAACACAGGAACGCTGCAGACCTTCGAAATCTTACCCTCATTCCACCTGCAGCCAACAGGAACTCCAGGGACGTACTTCATCCAAACTGGGTCAAACCAAGGCCTGCCTTTAACTCTGTCCACCAGCCCCACAGTAACGCTCACTGCAGGGGCATCTCCCTCGTCTCCAGAGCAGATCATTGTTCATGCACTGTCTCCTGAGAATTTACTCAACTCCAGTGAAAACGTCACTGTTCAGATGTCCCACCCCAGTGTCATCATCCGGACCGTCTCTTCGGACGACATCACCTCCCCGGAGTCCATAACCCAGTCGGACCTGACGGTGGAACATTCTGTCCTAGAAAGCACTCGGGAGACTCCTGAAGTGGACGTCTTCAGCTCCGATATCCACGCAGATAAACTAGGCCATGTCAAAGGTGACACTCAGAGACAAATGGACGGCCAGGCGTCCCTCAGTGGCTCAGAAACAGCGAAGTTCTTGGAGGGCACTACGGAGGAGCCCAAGGACGATGCGGCCGAGACTGGACTCCAGTCAGAGGAGGGGCAGGAGGACCTGACTGCTACATATACAGCACAGACTCTGGGTTCTCCCACAATGGAAGAGCAAGTCAGTGAATCAACAATAGGAGAAGGCACTGTTCTCATCGTCCCGTCACCCAATGGATTCATGCCGACTACAGACATGGACAACGACTCTGTCCTGCCCTTGACAACACTGACAGATCCTATACTTGAACACCAAGGGGAAGGCTCAGACATTATTGGTTCTGATCCAGCGGACTCAAAAGACATGGATGAATTAGTTGACTGACACAGACTGGCATCACTAACTTTTGTAAATGGATTCAGTACTCTGTGTTCTTCACAAGTAGGTTATTTTAATAGTGTGACCAACATAAGTCATTAAGTATTTAACTTAGTGTAGCTTATGGTACTTCTACACTAAAGGGTAGAAAAAATACTACTGTGCTTTATCTACAATGGTTTAGATATCGGGTCAGTGACGTTCACATGGTTTGATATATACAGGACCTCTTCACCAAGTGAAATGGAAATCTCCGCTCCTGCCCTATTATGTATTTCTGGTCAGTGTTAATAAGTTAGGATCACATTTTGGATTCTATTAGAAAGGGTAGTTGCTATACAGATGGagaaaaagcacaacaaaacgCCAAATGTCTTTCTGAAACATTGAATAAATGACTTTCCTTTGTGCTTTGCCA

Function

NR:

description
PREDICTED: cyclin-D-binding Myb-like transcription factor 1

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005488 binding molecular_function

KEGG:

id description
K21625 DMTF1, DMP1; cyclin-D-binding Myb-like transcription factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006770 True 2791 mRNA 0.50 17 19611319 19621286

Neighbor

gene id symbol gene type direction distance location
AMCG00006772 grm3,LOC107090533 coding upstream 42561 19555403 ~ 19568758 (+)
AMCG00006769 LOC108263977,LOC108444204,LOC107665551,LOC107559415 coding upstream 69353 19537333 ~ 19541966 (+)
AMCG00006752 LOC107577127 coding upstream 1211128 18368664 ~ 18400191 (+)
AMCG00006753 NA coding upstream 1271862 18317693 ~ 18339457 (+)
AMCG00006750 NA coding upstream 1646548 17963401 ~ 17964771 (+)
AMCG00006771 NA coding downstream 14831 19636117 ~ 19642171 (+)
AMCG00006779 NA coding downstream 25844 19647130 ~ 19650694 (+)
AMCG00006778 fam107b,LOC102787157 coding downstream 76145 19697431 ~ 19706930 (+)
AMCG00006783 NA coding downstream 250720 19872006 ~ 19874589 (+)
AMCG00006781 NA coding downstream 263436 19884722 ~ 19933196 (+)
G112275 NA non-coding upstream 115554 19495534 ~ 19495765 (+)
G112259 NA non-coding upstream 215122 19395917 ~ 19396197 (+)
G112233 NA non-coding upstream 510921 19095628 ~ 19100398 (+)
G112207 NA non-coding upstream 707776 18900939 ~ 18903543 (+)
G112182 NA non-coding upstream 866102 18695159 ~ 18745217 (+)
G112295 NA non-coding downstream 5527 19626813 ~ 19628164 (+)
G112302 NA non-coding downstream 11953 19633239 ~ 19635224 (+)
G112305 NA non-coding downstream 22365 19643651 ~ 19645956 (+)
G112350 NA non-coding downstream 319207 19940493 ~ 19940975 (+)
G112380 NA non-coding downstream 361719 19983005 ~ 19983296 (+)
AMCG00006672 NA other upstream 5671844 13933666 ~ 13939475 (+)
G111197 NA other upstream 6567871 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 6959504 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 7288041 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 10043043 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 1316211 20937497 ~ 20944977 (+)
G112567 NA other downstream 1427050 21048336 ~ 21049038 (+)
G112600 NA other downstream 1521579 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 1643967 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 1996346 21617632 ~ 21622508 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000020_06927376_06933108 DMTF1 coding CI01000020 null 6926690 ~ 6933416 (+)