AMCG00006771


Basic Information

Item Value
gene id AMCG00006771
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19636117 ~ 19642171 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006771
ATGAAGGAATACCCCAGCATTTCTCTAGACCGCTTCGACAGAGACAATCTGAGCGCCAAGGCATATTTTCTGTCTCACTGTCACAAAGGTAGATCATATGAAAGGATTGAAAGGACCGGCGCTAAAAAGAAGGTTAAAATGCAGCCTTACTCTCCGGCTGTACTGCTCCCCAGTGACCAAGGAGCTGTTACTGAGCAACCCCCGgTTGGTTTAGAAGTGGAAAGCCCAACTCAAATTTCTCTGATTGATGAAGCATCTGGAGAGAAGGAAGATATTCTAGTGACACTTCTCCCTGCTGGTCACTGTCCTGGGTCAGTCATGTTCTTGTTCGAAGGCAATAATGGGACAGTTCTGTACACAGGAGACTTCAGAATGGCTGAAGGAGAGGCTGCTCGAATGGAGTTTCTGCACTCGGGGGACAGGGTGAAAGACATTCAGAGTGTTTACCTGGACACAACATTCTTTGACCCCAGGTTCTACCAGATACCAAGCAGGGAGGAATGTTTAAATGGAATAAAGGACCTGGTGAGAAACTGGATTACTCTCAGTCCATACCATGTTGTGTGGTTGAACTGCAAAGCTGCCTATGGCTACGAGTACCTCTTCACCAACCTCAGTGAGGAGTTTGGATCACAGGTCCATGTAAAGTACCTGGACATGTTCAAAAAGATGCCCGAAATACTGTGCCATGTCACCACGGACAGGGCAACGCAGATCCATGCGTGCAGACATCCAAGGGATGATGAATTCTTCAGAGCAAACCGGCTGCCGTGTGGAATCGTGGCTAAAGACGGAACCCCACTGCGCATAATCAGCATTAAACCGTCCACCATGTGGTTCGGGGAAAGATcgaggaaaacaaatgtcattgtGAGGACTGGGTCGAGTTCTTACAGAGCCTGTTTCTCATTTCATTCATCCTATAAAGAGatcAAAGATTTTCTTACCCATATTCACCCTGTGAATTTGTATCCCAATGTTATCCCAATGGGCAGAACCATAGAGGAGGTCAAAGAAATATTAAAACCCATGTGTAGAGAAAATTCTGGAAGAGGGGAGATTGTTTACAAACCGCTGGGGGCCCTCAAAAGGGCAAAACTGCATTTCACATCcaaagATTCTGACAGTGAGGAGGAGCTCTTTGATGAGGAAGAGGTGACGCCCTGGAGAAGAAAGTTGCCGGGGAAACAGGAGCAGAAACCTATGGCCTCAAAGTCTGAGAAGCCGCGGGAGATCCAGACAGGACCTCTCGTAAGCTGCTGCAATGAGGCTTCTCATGACGGGACAGGAAGGAAGTCCTCTACACAGGACTACATGGACTGCGAAGAGTCCAATGACGATGATGAAGATGAGGTCGAAGAAGAGCAGGAAGAAAGCTCTGGAAACACTACAAACAATCCATCTTCTGGTGACCAGAGCAGAAATGGTTGTACCAAGACCTGTGCGGCAACAGCTTGCCTAGAAGAAGAAAGACTTGAAGATCAACAAACGGAAACCCCAGTTGTGGAGTTAAATGGCTCTAAACTTCCAAAGTGGGATGAGTTTTTCGAACCGGAACCAGTCCTCACAGACGAGGGTTCGGAACTCGAGAACAGTCAGACCCGTTCTGCGGAAGTCACAGGACCCCGGTCGCCGGACCTGTTCAGCGATGACGAGGACTCCACTCACGTCTCCTCTCAGAGTTCCTCCCAGTCAACGCACATCTCCGAGCAGGGCAGCGAGGGCTGGGGCAGCCAGACGGACACCGTGCTGCTCTCGTCCCAAGAGAGAAGGGCAGAGCTTCTCAAGTGTTCACACAAAGGTGAGCACAAATCTAGCCAATCGGAAAACAACGCAGATGCAAGGAGAGGAGGGTGCAGTTTTCTCCGGCCAAACGAGGTCTTGCATGAGCCTGAAGTCCACGTGGAAAGCAGTGAGCGGAGGCCTGTACATTTGCCATCAGAGGTCAAATCAGAATCTCAAACTTCCTCCGATTTTGAAATCCCCTCGACGCCCGACTCCGAAGTGCCTCGCGTAGAGGAGCTGAAGGATCTGTACAAGAAGCTGGCTGCCGGGGAGGCCGTTGTCGTGAAGAGAGGCAGTCAGGGAAGCACACCAACTTCATGAccagattttaaatgaaaccCCAGGAGAGGATGGACTACTTTGTATATCATGTGGAACTCAGGGTGGTCCTAGAAATAAGAACAATTACACTATTTGTGATGTTCAATGCCACATTTAATGGCAACTTGAATATTTGTATCATTCCTTTTCAAGCACTTCTCAATGCAACGGTTGTATCTGACTTCTCAGGACCCAGCTAATGATGCCGATGCCTTTGCCTTTTTGGCCTCCCGTTTCCGAAGTTGTGGGTGAGAATGGGTTGTTACAACTGGTTCTAtaccttaatttattttatcactCATTGTTTTATTGCTGCTTAATGAATACTTAATTCCTCTTTTAGATTGTAAGGTTGCTACAAAAGACAGTATATTTTTATGGGTGGACCAAGGCAATACTGAACATTAACAGGATATTTAATGACTGGAGTCACTTT

Function

GO:

id name namespace
GO:0009987 cellular process biological_process
GO:0004518 nuclease activity molecular_function

KEGG:

id description
K10887 DCLRE1C, ARTEMIS, SCIDA; DNA cross-link repair 1C protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006771 True 2542 mRNA 0.48 14 19636117 19642171

Neighbor

gene id symbol gene type direction distance location
AMCG00006770 LOC106594134 coding upstream 14831 19611319 ~ 19621286 (+)
AMCG00006772 grm3,LOC107090533 coding upstream 67359 19555403 ~ 19568758 (+)
AMCG00006769 LOC108263977,LOC108444204,LOC107665551,LOC107559415 coding upstream 94151 19537333 ~ 19541966 (+)
AMCG00006752 LOC107577127 coding upstream 1235926 18368664 ~ 18400191 (+)
AMCG00006753 NA coding upstream 1296660 18317693 ~ 18339457 (+)
AMCG00006779 NA coding downstream 4959 19647130 ~ 19650694 (+)
AMCG00006778 fam107b,LOC102787157 coding downstream 55260 19697431 ~ 19706930 (+)
AMCG00006783 NA coding downstream 229835 19872006 ~ 19874589 (+)
AMCG00006781 NA coding downstream 242551 19884722 ~ 19933196 (+)
AMCG00006784 NA coding downstream 306970 19949141 ~ 19955839 (+)
G112302 NA non-coding upstream 893 19633239 ~ 19635224 (+)
G112295 NA non-coding upstream 7953 19626813 ~ 19628164 (+)
G112275 NA non-coding upstream 140352 19495534 ~ 19495765 (+)
G112259 NA non-coding upstream 239920 19395917 ~ 19396197 (+)
G112233 NA non-coding upstream 535719 19095628 ~ 19100398 (+)
G112305 NA non-coding downstream 1480 19643651 ~ 19645956 (+)
G112350 NA non-coding downstream 298322 19940493 ~ 19940975 (+)
G112380 NA non-coding downstream 340834 19983005 ~ 19983296 (+)
G112424 NA non-coding downstream 633822 20275993 ~ 20276232 (+)
G112430 NA non-coding downstream 895772 20537943 ~ 20538220 (+)
AMCG00006672 NA other upstream 5696642 13933666 ~ 13939475 (+)
G111197 NA other upstream 6592669 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 6984302 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 7312839 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 10067841 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 1295326 20937497 ~ 20944977 (+)
G112567 NA other downstream 1406165 21048336 ~ 21049038 (+)
G112600 NA other downstream 1500694 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 1623082 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 1975461 21617632 ~ 21622508 (+)

Expression


Co-expression Network