AMCG00006781


Basic Information

Item Value
gene id AMCG00006781
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19884722 ~ 19933196 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006781
CACAGCTTTCCTACACAACATCTAatatccctttttattttgattgttttctagGTTCTACATCGAAAGTATATCCTACCTGAAGGACAATGCTACAATTGAACTGTTTTTCCTAAATGCTAAATCTTGTATTTACAAGGAACTTATAGAGGTTGACAGTGACGTGGTATTTGAGCTGGCTTCCTATATTTTGCAGGAGGCAAAAGGTGACTTTACGAGCAATGAAGTCACAAAAGCTGATTTGAAGAAGCTGCCAGCACTCCCAACGCAAGCACTGAAGGAGCACCCTTCCCTCGCTTACTGtgaggACAGAGTAATCGAGCACTACAAGAAGCTGAGCGGTCAGTCCAGGGGTCAAGCGATCGTCAATTATATGAGCATTGTGGAATCGCTTCCCACATATGGAGTGCATTATTATGCTGTAAAGGACAAGCAGGGTATTCCGTGGTGGCTGGGACTGAGCTACAAAGGGATTTTCCAGTACGACCATCATGACAAAGTGAAGCCCAGGAAGGTGTTCCAATGGAGGCAGCTGGAAAACCTTTACTTCAGAGAGAAGAAGTTTTCTGTGGAAGTTCATGACCCTCGCAGGGCATCCGTGACTAGAAGGACCTTCGGACACAGTGGTATTGCAGTACACACATGGTATGCCTGTCCTGCGCTGATAAAGTCCATCTGGGCTATGGCTATTAGTCAGCACCAATTTTATCtggacagaaaacaaagcaagTCAAAAATACATGCAGCGAGAAGCCTGAGTGAGATTGCCATCGACTTGACAGAAACTGGAACACTGAAGACCTCTAAACTAGCCAACATGGGGAGCAAGGGCAAGATTATCAGTGGCAGCAGTGGAAGCCTACTGTCCTCAGGTTCCCAGGAGTCCGATAGCTCCCAGTCTGCCAAGAAAGACATGCTGGCTGCACTAAAATCCAGGCAGGAAGCTCTAGAGGAGACACTACGCCAGCGCCTTGAGGAACTCAAGAGACTCTGCATCCGTGAGGCGGAGCTGACAGGAAAGATGCCTAAAGAATATCCCTTAGACCCCGGGGAGGAGCTGCCCGCCGTCCGCCGGAGGATCGGCACTGCCTTCAAACTGGACGAGCAGAAAATCCTGCCAAAGGGAGAGCAGGAGGCCGAACTGGAGCGCCTGGAGCGGGAGTTTGCCATCCAGTCTCAGATCACGGAGGCGGCACGGAGGCTGGCCAGCGACTCGCATGTCAGCAAGAAGCTGAAGAAGCAGAGGAAGACCTCCTATCTGAATGCACTGAAGAAACTGCAGGACATTGAGAACTCCATCAACGAGCACCGCATCAAATCTGGCAAGAAGCCCACGCAGCGGGCATCACTCATTATCGAAGAAGCAAATATTGGCTCTGAAGACAGTTCGTTGTCAGACGCCCTTGTTCTTGAGGACGATGATTCTCAGGTGACTGGCACCTTTTCCCCCACCGCATCCCCCCACAAAGGCCTGCCACCCCGGCCCCCTTCGCACAGCAGACCCCCTCCTCCGCAGTCCCTGGAGGGGCTCCGGCACTTGCACTACCAGCGCAGCGACTACGACAAGTCTCCCATCAAGCCCAAGATGTGGAGCGAGTCGTCCTTAGACGAGCCATATGAAAAAGTGAAGAAGCGCACTTCTCACGGGCACTCCAGCAGTCACAAGCGCTTTCCGAGTTCAGGGAGCTGTGCAGAGGCCGGGGGGAGCAACTCTCTGCAGAACAGCCCTATCAGGAGCCTCCCCCACTGGAACTCCCAGTCCAGCATGCCCTCCACCCCCGACCTGCGGGTACGCAGCCCGCACTACGTCCACTCCACCAGGTCAGTGGATATCAGCCCCACCCGACTGCACAGTTTGGCACAGCACTTTAGACACCGGAGCTCCAGCCTGGAGTCACAGGGGAAGCTGCTGGGCTCCGAGAACGAGACGGGCAGCCCAGACTTCTACACGCCGCGCACTCGCAGCAGCAACGGCTCCGACCCACTGGATGACTGTTCCTCCTGCACCAGCCACTCCAGCTCGGAGCACTACTACCCCGCCCAGGGCAACCCCAACTACTCCACACTGGCCGAGGACTCCCCATCGAAAGCCCGCCAGCGGCAGAGACAGCGACACAAGTCGGCCAGCAACCTGGGCTCCTCCAACTCGGGCAGCATGCCCAACCTGGCGGCCAAGAATGGCAGCGCCCACCATGGCGTGTACTTGCACAGCCAGAGCCAGCCGTCGTCGCAGTACCGCATCAAGGAGTACCCGCTGTACATCGAGGGCAGCCCCACGCCGGTGGTGGTACGCAGCCTGGAGAACGACCAAGAGGGACACTACAGCGTCAAGGCCCAGTTCAAGACCTCCAACTCCTACACGGCTGGGGGGATGTACAAGGAGAGCTGGCACGGGGAGGAGGGCGAGAGCAGTGGCCGGCTCACCCCGTCCCGCTCGCAGATCGTGCGGACTCCCTCTCTGGGGCGGGAGGGCGGGAACAGGACTGCAGTGTCGGATGAGCTGCGCTGCTGGTACCAGCGCTCCTCTGCCTCGCTCAAAGAGCACAACAGACTCTCGCACACCAGCTCCAACTCCTCAGACAGCGGCTCGCAGTACGGCACACTGCAGGGCTCCTTCCTGGCGCACAGCCGAGGGAACAGGATGCCACACATCTCCAAAGGATCATCAGcCGCCTCACCTCACAGTCAGAGGAGCATGACCCCGTCCAGCGAGCTGGCTGCCACTCCACCCTGCAGTCCACAGCACATCCTGAGCTGGCAGAGCGGCTCCTACAACGACAGCTGTTTCCTGGACAGCTCCCTGTACTCGGAATTAGCGGACGTCCAGTGGTACGGACGCGAAAAGGCCAAGCCAGGAACTCTGGTCTGAACTCCTGTTGTTCCCCCGAACTGGTCACCCCATCAATGTCCCACAGAGATCGTAACACTGTCTCTTGACGCTTTGCCTTATGTGGGCAGAACTACCCTCAAACACTTCAGCTCCAAGCACTTTTATTCCACCAGTACATCCACGAGCAGCGCTGGCGAGGCCTTGTAGGCCGGGCCCTGCGGTCTGTCCTTCAGTGACCACACCATCCACTGACGGGACGCTAGCCTCAGCCCGGCGTGTGCCATCGGACCCAGTGTAACACCAGCCTTCAACTACCCGACAGCCACAACTGTGTGCACAAAAATCCACTCTGGTTGGATTCCTGGagttacaaaacaacaaacaaagccaCTAGTCTGAGATGTGGGAcagctgacttttttttttttttcaatgcaataCTAGTATCTCTACACTGAAGAGTGAAGCCCTGGACTGACGGACAGCGTGAATCTTTGTAGAGTTTTCAAAGTCCTTTCAAATACTTTCTGCAGGAACAACGTAACTAAAACCAGAGATGAACACTAACCCACCTTGCTATGGCTTCTTATTCTGGAccaatatcttttttttgttgttgttgttgttgtcgttttgtttttgactcgtttggttttattttttttaaaagagagatTAATTGCTGAAGACAGACTTCTCgcatcttttgaaaatattgaaaaatattttttaaagagtatTTTTCCCCAAacgttttaaagaaaaagactaCTCAGCATCCACAGTCAAAATGCACATATTACCTAACGATCTGTGTCTATCGGCTGCAGACAAACATTAATGACAGTGGAGCATCTCATTAGCTTCTGAACGACCAAAgatcaaaaaaggaaaaaaaaaaaaaaaatgggaccCTTCAGTTCTTCATGCGAGGAATCCCCAGCCTTCATCAGCACAGTGTCCAATACCGGATTTTCATGCAACTTGCAAATTCCACAATGTCAAACTACCCTGCTTGTTCTCTTAGTGTTGTTCACGTTGAAATTCTGTATTTACGTTTGGAGCTTTTTTCCCTCCTGTCAATTGCCCCCCACATACTCCACGGCAAACCCCAAACCCACCGAAAGTCCAGGTACAGTATTCGCTCCACCCGACAAGGTTAACTTTTAAATACCGCTCGCAAATTTGGTTCAAGTCCCTTTGTTTCAGTGATCCACGCTCTTTCACACGTCATCCTTCTCACCCTCGTGCGCCAGTCTAACTAGGTGTTTTGGTATACAAGCTCCTTCTTTGTACATAAAAATATCTGCCCAaacttcatatatttatttttttatagcagTTCAGATGCTAGTGAAGTGAGCATCCTTAGGTTATGAGTAGCAGCCCGTGGTGTGGTCGAGTTTGTAGAAATCGTGGGTGAATAATAGTGTTGCAGGAATCCTTAGTTTACTGTCTAGCCCAGGCTCAGCCAAATCAAATCTTAGCCTTGTAATCAAAGTATAGGTCATATCTCAGGCTTCTATCATTGTCCACCTTGTCCCCGTAATGGCGAGGCCTGGGTTCTGTACCCCACCGGTGCTATAACACATTGGTGCTGTAACACTTGTACTGTAACATCTCTGAAACAGCTCTTTCAAAAGCCAATGCCATGAGAGCCATTCAAACCAACCGAAAGTTCTCCAACTTGATTGAAACCATTTATGATGCCTGACAGCTTTTTGGATGGGGTGGGAGGGACTTGTTTTAATCACTTtccaagttttgtttttgtaatcacACTGCCTTACCAAAAGAAATACAGGTTTGTACCAAATATGGGTTTAAAGTGTGATGAAAACAGCCGAGTATTTCACATCGAACAGCTGTTGTTCAGGTCTTGGGTGCGTAATGTTCATTCGTAAACCTTCCCTTTAAAACATTGAGCTGTTCCTACTGTCTGCTGTAAACTATTTACTGTAAACCTACAAACATAAACATCCACCCGAGAAGATCTGGACAAAGTTCACATTACATTAACAACCACAAGCGCAAGCCTCACTGTGGCCGAACGCACAACATGAGGAACTGTACTCTCGAATCGCTGACCTAGGGAATCTTCTCACAGTTTCCTGCAGATAAAATAGCACAGCTTCGTTTTaagtcaacaacaacaacacaattacCATGCCAGCAACATTTCTTTCATGTGCTTATTTCGGGACACACTCGCACGTGGTCCTGATAGCTCTGCTTCTTTTCATGTTGAATCGAAAGAGTATGTCCTAATTTAAACGTGTCAAACAAATATTCATCTTCAAGAGACAGATCATTTAACAAGTCTCTTGCTGCACGAATCGCACATCCCAGTACAAAACTGTATACAAGTttcattgtgtaaaaaaaaaaaagcccttctgatacaaaatggaaagaatacgTGACAGATTTCTGCAACTTAAACACATCTTCTATGTATTATAGCGTAAAAGAAGTCTTAACGCTCAAAGACctgcaacatttttattatgatatGTATTGATATTCAGTATTTCATCAATGATAGTGAAGTAAGTTTTTTCactaagtaaattaaacaaaaacagggtATCAGTTCATCACATTGTGCGGTCAGATATTGTATGTaatcaagtttttattttaattttactgttgGGACTATGATTGTTCTCATACTGAAGTGACACAGAAAGAGGGTTTGAGTAGcacattgttttacagtttttacaagCCATATTTTCCAACTCATCAAGACAAACTCAAGCAGTCTTGATTTCACAGTTTAAAGCTCATCTTGCATGGGCTTCCCCCCCACCTGGATttgattcattttatatttcaattttataTGAATAGGTTTAATAAGCACACCTCTTATGTAAGATCAGAGAAACAATTACAGCCAAACGATGTTGTGTTCTGTGCTGAGGGCTACGTTTTTATGTAGgtgaaatacatacaataatgtaatctaatttccatcttttttattatgtattttttaagcatGTTGTTTTCTTGAGATCCATTTCCTGTGCACAACTACCATGTAAGGTGTATTACAGATCGTTTGGTATTGTACCAATTACAGTAAGTGCAGGACTGAAAGTTTTGCTGGGGCTAGAGAGCAGATTTACTGTGGAATTTCGCTTTGCCCTTGTAAGgaacatttaccttttttaatgGATTGGAGACAGCAGATGAGAGCTAAGTGAATGTGGGAGTGTGATAAATGTGGTGCAGGACAACCTGTCGGACAGCTGGAAGACAAACGAGAAACCTTTAGATTTatcaaaaagaaatgcagacaccttggaaaaaacactttctacTGCAGAGTGAATTGGCcatttatttgactttatttgTAAGTCAACCTTTTTATCCTTACATTCACTTAGTGCATCTGCTGCTGAAAACCTATTTAACTGAAACCCTATCCAGCCATTGACAGTTGAGTTTCtcttcattgtatttttgtatttgttttgccatCATATTCGAATCTCACTGTGGAGAGCAAAGCAAATTGCACATATTGATAAATCCTTTAATGACATTTTCCCCATTGCTTACCAATGGTTCAGAGGTACTTCTGGAATGTAATCCATTTCACAACTTCAAAACCAACCAGAAAACACTGATGCAAACTCTCGAATCCGAAAGCCCTTCCTTACATGCGTGTGCTCGTCTTAACTGCATATGTTCTTTCTTCAGCTTGTGGTAATCTCTGATATGAATCCCAATGTGAGTACATTACTTGTTGTACCCTATATTGTCACCATCACACCATTGCTGTCTGTTATCAGTATGATGTAAACATTTTATAgtggagaggaaagaaaaaaaaaaaaactaacaaaatcaaCGTTTATGAAAGGGGGGCAGTGTGTTTTGAAAGGCATTTACCATTGTTTTAATGATGttcaaagttattttttaatgagtcAGTATTAGATTTTAGTTTGGACATAGTAACAACCCTTCCAGGTGCTACAAAATGACCAGTTACTGCTTCGTTACCTAGGTGTagaattttaattatattgtcgTCAATAGTTTTAATACCAGTTGTGTAAAATGAAGGacattagtttaaaaataaactatgtaGGTCACTCCCTCCATCTGACAATAGAGCATGTAACATGTGACATGATTTTATTGGATTCTGTTCAACcgtaatcaaacaaaaaataaaaaaaagtgtgttgtagaaaacaaatgtggaattgtaagaaaaaacaacagattcCACTGTTAATTTATTCTTTTTCTATTAAGAATTTGTATAgtaactttacatttttcaaaactgtgTTGTTGGCAACTGATAATGAATTTTCAAGGAGAAAATTTGGTGGTTCTTGagattatgaaaaataaattattgctgAATGTTCTCAAAATGGatgtgtctttt

Function

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component

KEGG:

id description
K23970 FRMD4; FERM domain-containing protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006781 True 7253 mRNA 0.46 19 19884722 19933196

Neighbor

gene id symbol gene type direction distance location
AMCG00006783 NA coding upstream 10133 19872006 ~ 19874589 (+)
AMCG00006778 fam107b,LOC102787157 coding upstream 177792 19697431 ~ 19706930 (+)
AMCG00006779 NA coding upstream 234028 19647130 ~ 19650694 (+)
AMCG00006771 NA coding upstream 242551 19636117 ~ 19642171 (+)
AMCG00006770 LOC106594134 coding upstream 263436 19611319 ~ 19621286 (+)
AMCG00006784 NA coding downstream 15945 19949141 ~ 19955839 (+)
AMCG00006782 sephs1,LOC106573416 coding downstream 32833 19966029 ~ 19971398 (+)
AMCG00006786 NA coding downstream 63328 19996524 ~ 19999748 (+)
AMCG00006787 NA coding downstream 82749 20015945 ~ 20047024 (+)
AMCG00006791 NA coding downstream 329104 20262300 ~ 20262799 (+)
G112305 NA non-coding upstream 238766 19643651 ~ 19645956 (+)
G112302 NA non-coding upstream 249498 19633239 ~ 19635224 (+)
G112295 NA non-coding upstream 256558 19626813 ~ 19628164 (+)
G112275 NA non-coding upstream 388957 19495534 ~ 19495765 (+)
G112259 NA non-coding upstream 488525 19395917 ~ 19396197 (+)
G112350 NA non-coding downstream 7297 19940493 ~ 19940975 (+)
G112380 NA non-coding downstream 49809 19983005 ~ 19983296 (+)
G112424 NA non-coding downstream 342797 20275993 ~ 20276232 (+)
G112430 NA non-coding downstream 604747 20537943 ~ 20538220 (+)
G112435 NA non-coding downstream 629861 20563057 ~ 20563275 (+)
AMCG00006672 NA other upstream 5945247 13933666 ~ 13939475 (+)
G111197 NA other upstream 6841274 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 7232907 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 7561444 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 10316446 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 1004301 20937497 ~ 20944977 (+)
G112567 NA other downstream 1115140 21048336 ~ 21049038 (+)
G112600 NA other downstream 1209669 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 1332057 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 1684436 21617632 ~ 21622508 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_10756927_10790192 FRMD4A misc CI01000013 null 10756927 ~ 10792761 (+)
rainbow trout (Oncorhynchus mykiss) G87113 NA non-coding NC_048565.1 CM023219.2 77517445 ~ 77517657 (-)