AMCG00006782 (sephs1,LOC106573416)


Basic Information

Item Value
gene id AMCG00006782
gene name sephs1,LOC106573416
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19966029 ~ 19971398 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006782
CAGGTTGCCAGTAGTTGAGTAGAAGAGCCCTTTGCATTGGTTAAAGTGCAGCAGCCTTCTCTAGCCATGTCTGTTCGGGAGTCCTTTAACCCCGAGAGCTACGAACTGGACAAGAGTTTTCGACTCACGCGCTTCACAGAACTGAAAGGCACGGGGTGTAAAGTTCCACAGGATGTCTTGCAAAAGTTATTGGAATCCCTTCAGGAAAACCACTTTCAGGAAGATGAACAGTTTCTGGGAGCAGTCATGCCCAGGCTTGGCATTGGGATGGACACGTGCGTCATCCCTTTAAGACACGGTGGCCTTTCGCTGGTCCAGACGACAGACTACATTTATCCCATCGTTGACGACCCCTACATGATGGGCCGTATCGCATGTGCCAATGTACTAAGTGACTTGTATGCCATGGGCGTGACAGAATGTGACAATATGTTGATGCTTCTCGGAATCAGCAATAAACTGTCAGATAAGgAGAGAGACAAGGTGATGCCTCTAATAATTCAGGGTTTTAAGGATGCAGCGGAAGAGGCCGGGACATCGGTAACTGGAGGACAGACGGTGCTAAACCCGTGGATCGTGCTTGGTGGAGTGGCGACGACTGTGTGCCAGCCCAATGAGTTCATCATGCCAGACAACGCGGTACCCGGAGATGTACTAGTACTGACGAAACCCTTAGGAACACAAGTAGCCGTGGCGGTGCACCAGTGGCTGGATATCCCAGAAAAATGGAACAAAATCAAGCTGGTCGTGACGCAAGAGGATGTGGAGTTGGCGTACCAGGAGGCCATGATGAATATGGCACGACTAAACAGAACCGCGGCTGGACTCATGCACACGTTCAACGCCCACGCCGCCACAGACATCACGGGGTTCGGCATCCTGGGTCACGCACAGAACCTGGCCCGGCAGCAGAGGAACGAAGTGTCATTTGTCATCCACAACCTGCCCGTCCTGGCGAAGATGGCCGCCGTGAGCAAAGCGTGTGGGAATATGTTTGGCCTTATGCACGGTACCTGCCCAGAAACATCCGGAGGTCTTCTGATCTGTTTACCTCGCGAACAAGCAGCTCGCTTCTGTGCCGAGATCAAGTCTCCGAAGTACGGCGAGGGCCACCAAGCTTGGATCATCGGCATCGTAGAGAAAGGAAACCGCACAGCCCGAATCATCGACAAGCCGCGAATCATCGAAGTCGCCCCGCAAGTCGCCACACAGAACGTTAACCCCACCCCCGGTGCCACGTCTTAATTTAGGGAAGGGAGTGGGTGAATTTTTAGAGAGATATTCTTGTACCATCCTAGAGTATACAAACTGCGATGTTAATTTGTATCTCCTCTGCCCATATGTTGGCCTTAGGGCAGTTCATGTGCGGATACAatttaagacaaaaaagaataaatccattgccttttgtgtttattattttctgttacatTAACTGAAGATGCACCTAATCTTAAGGCAGCTTCTAAGTTGAGAATATTATCCAATACTGTTGATTCATTTTGAATCTTTAGACACTTATCGTCTTTTGCCGTATAGGCTCTTTTTAAAGGTGCTTTCACCGAGCACACATTACCAACAAGTAGCGTGATAGCGTTTTTGTTTGTCCGTTCACTATGTGTACAATTAAAACCTAGGACTAGTGTAAACGCAGTAACAGATGCCTTGAAAGATTGAGAGAGAAACGATGTATGTGAGAGAGACCAGGAGATGTAAAACTTATGTAAAGGGTtgcatgttttttcagttttttgttgttgttaatttctCTGATTTTAGGTCTGTATTGTTTTGTCCAATGGTTCAAAAGCATTACTGCCATcgttcattttttatgttttatttttaagaagtaGCACATTCTGCAAAGCAGTTTGTCATCGAGTGCTCACACTGCATGGCAAGCACTTTTAATTGAaggatataaaaaatacaaatttcattCTTCCTAGGCGATAACACTtactgtatttgcaaagatCTGTTGGTGTATTATGGTCTGTTTCTGCGAGGAACAGTGCTCATCCCTCTGCTCAGTACAGGGCAGGAAATGTAGCGgccaaaacaaaaagttgtTACTGTACGATACACTTTTGCTGTCTAAGAAATATTAAGtacacaaataattttaaatataatcagtAATGATCTGTTCTGTGGTCAGTagtgtttattacattttatattttgtatagcgctatatagacttttttttttggttctggtttattttcatatttgcatcAGCTAATGTTCCTTATGTTCCCTCGCTTTTCCCCCTTTCTATTCTGCTAAATAATGTGCACGCTCTTGTGACAATGTACAACTTGCCAACAGCTTGAGGTAAAACTTAtcccaataaatatttaatttttttattgctcttgtataagagatgtatttgtctttttatatattaaaaaagcatatGGGAGAGATGTCccatttctcacatttaatTCTACGTTAGCgaacattttttagtttttgaacCATAAACgctaatattttttccaaatttaGATGAAACTGGATCCTTCATGATTAGGAATGCTTTTTATATTGCTATGGTATTAATCATCCATTGTATTCGATACAAATCAGTAATCTATGCATAGAGAAACACCAACTGTGACCATAGAGTATAAGTGTGGGGTGTCCATGTCAGAACCGTGGTGCTGTGTTTTGTAGAACGCAAACCGATGTCTGGCCTTTAGTCTGACATTGCTGTACTGTTGATGCTGTACAACAACACCAAGTACTGTTTTCATTCTTGACTGTTGCCTCGGTGTGTCTGTATTAAGGATGCAATTTGTGGACGGGGAGGGCGGGGATTTTATCTCAGATTAATCTTTTTAAGTTTAGCTAGTTTTTAATTACGGGCTGGGGGTCGTCAGGGTGATCTCTTGAATTGAATCAGTATTTCGGGTGTTTTGTTTACGGGCTCACACGGCTCTTTTTTTTGTGCCTCTTCAATAAAGGCAGCTTACTGTTAACCTACTCAGCGCTTcgatatttttctttccatcctCAGGACTTCACGTCTATCATTGTCTCCACATGGCCGAAATCAACAGTTGCAATATTAAAAGATGCCCAGTTGATGACAAATCTCAGCTTTATAAGACGTTGAAGACTTTATAAGATGTTTTTTCACAATAAGTGcttgctgtgtgttttatgaGATGTAATTGATTAGATTGCTCAGGTCTGTTGTCTGCCTGGCTAATTCTGCTTGGTTTGAAGTTGGCTGCTCC

Function

symbol description
sephs1 Predicted to enable protein heterodimerization activity; protein homodimerization activity; and selenide, water dikinase activity. Predicted to be involved in selenocysteine biosynthetic process. Predicted to act upstream of or within phosphorylation. Predicted to be located in nuclear membrane and plasma membrane. Predicted to be active in cytoplasm. Orthologous to human SEPHS1 (selenophosphate synthetase 1).

NR:

description
PREDICTED: selenide, water dikinase 1-like

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0005886 plasma membrane cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0004756 selenide, water dikinase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K01008 selD, SEPHS; selenide, water dikinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006782 True 3257 mRNA 0.43 8 19966029 19971398

Neighbor

gene id symbol gene type direction distance location
AMCG00006784 NA coding upstream 10190 19949141 ~ 19955839 (+)
AMCG00006781 NA coding upstream 32833 19884722 ~ 19933196 (+)
AMCG00006783 NA coding upstream 91440 19872006 ~ 19874589 (+)
AMCG00006778 fam107b,LOC102787157 coding upstream 259099 19697431 ~ 19706930 (+)
AMCG00006779 NA coding upstream 315335 19647130 ~ 19650694 (+)
AMCG00006786 NA coding downstream 25126 19996524 ~ 19999748 (+)
AMCG00006787 NA coding downstream 44547 20015945 ~ 20047024 (+)
AMCG00006791 NA coding downstream 290902 20262300 ~ 20262799 (+)
AMCG00006792 shank3a,LOC107710388 coding downstream 373003 20344401 ~ 20355364 (+)
AMCG00006794 NA coding downstream 559957 20531355 ~ 20535351 (+)
G112350 NA non-coding upstream 25054 19940493 ~ 19940975 (+)
G112305 NA non-coding upstream 320073 19643651 ~ 19645956 (+)
G112302 NA non-coding upstream 330805 19633239 ~ 19635224 (+)
G112295 NA non-coding upstream 337865 19626813 ~ 19628164 (+)
G112275 NA non-coding upstream 470264 19495534 ~ 19495765 (+)
G112380 NA non-coding downstream 11607 19983005 ~ 19983296 (+)
G112424 NA non-coding downstream 304595 20275993 ~ 20276232 (+)
G112430 NA non-coding downstream 566545 20537943 ~ 20538220 (+)
G112435 NA non-coding downstream 591659 20563057 ~ 20563275 (+)
G112436 NA non-coding downstream 592100 20563498 ~ 20563788 (+)
AMCG00006672 NA other upstream 6026554 13933666 ~ 13939475 (+)
G111197 NA other upstream 6922581 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 7314214 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 7642751 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 10397753 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 966099 20937497 ~ 20944977 (+)
G112567 NA other downstream 1076938 21048336 ~ 21049038 (+)
G112600 NA other downstream 1171467 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 1293855 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 1646234 21617632 ~ 21622508 (+)

Expression


Co-expression Network