AMCG00006786


Basic Information

Item Value
gene id AMCG00006786
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19996524 ~ 19999748 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006786
GCGGCCGATCCGCCATCAAAACGGTTCTGTGAAAGTGGGCGTCTCCGGAACTCTGTATCATGTGGCGCACCTTTCGCTACATCCCAAATCCATCACAGTACAGGTTAAAACATGACTCACGATCTTCATAACTATTCTCATTTATTAAAATTTCAATTTGTTATCAGCGCCAAAGCTCAAaccagccacacacacacaccggtcAGATGTGTTCTTCGTAATCATCGTAATGCAGGAGAGTCAGACACGATTGCATCTTCACAGAAATAAGCTTTATAATACAGtctatatttaaagtaaaatggcTTTATGTGTAGTTATCTGATTGCGTCCCCAAATGGCGTATTTAAACACTGCATTTGCCTGGGGGAGGAGATGTAAGTACGGCATGGCGCGCTGCCCATGTGTTGTGTACGGCGGATGTTGTCGTTGTGCAGGGGAGCAGAGGCGCCTGCTATAGGAGTAGCGGGACTTAACTGATAAAGAGGAATGCCGTCCAATGTGGAGATCAAAGCTGCGGTTCACGACATTCAGATTCTGACTCGGAAGGCCAAACAGCTCAGCCAATCGGAAGGAACAATCATTTTGCAACAAGACACCTTTTTTAATGTGCAAAAGGGTCGTCTGAAGCTTAGGAATTTAATGAATGGGAGTGGCCAGTTAATATTCTATGACAGGCCAGATGTGGACGGACCAAAGCTCTCAAATTACTCCATCTCTCTCACGAATGATCCAGATGGACTTGCAGAAGTTCTTTCTGCTTCCTTGGGGGTCAAGGGAACAGTGAAAAAAGAGCGACACCTGTACATGGTTGGACAGACCAGGGTCCATGTGGACACAGTTGAGGGCCTGGGTCACTTCATGGAACTGGAGGTGGTGCTTAAAGATGGTCAGAGTGCAGAGGAAGGTGAAGACATCACTCACAAATTAATGGAAGAGCTGGGCGTGAAAAAGGAGGACCTTCTTGTTGGAGCTTATATGGATCTTTTACTAGCGGATAAAAAATTCTGAATATGAACACAAGTTAGGTCACattacatgtacagtacataattacattatcttctgtgttgttgttaataaattGATGGAAACATCTTTTTGATTTCCTCTTTAAATGGATCCCTGACTCTGGAACTCTTCTTACTAGTGAATCTAATGATGTGAAATGTATGTCTTTCCATTGAGTTCAATAACTCAGACCATGGACGAACCTTAGGATATCCAGTTGGGTGCATCTGAGAGAAAAGTAAACGGCCCCAAAAGAGGACATTTACATGTAGGGTTGAAAGCCAAAATATAGAATCCATGTCCATTATCTACTTTGTAAAGATATGTCTTTTCATGTTTATACTATATAATAGCAATGTCATAATAAATGCATCTTATTTGAATTTCACTGAATGCAGGTATCAATATGAATATAGTGCATTGCTTACAATAGTCTTTCATATGTGGTGGATTTGTGATTATCCATTTTCAGTTGTATAGTCGGGGCATACAACGCATCcattttcaaatcaataaacagcatggattattttagtttttaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006786 True 1555 mRNA 0.41 5 19996524 19999748

Neighbor

gene id symbol gene type direction distance location
AMCG00006782 sephs1,LOC106573416 coding upstream 25126 19966029 ~ 19971398 (+)
AMCG00006784 NA coding upstream 40685 19949141 ~ 19955839 (+)
AMCG00006781 NA coding upstream 63328 19884722 ~ 19933196 (+)
AMCG00006783 NA coding upstream 121935 19872006 ~ 19874589 (+)
AMCG00006778 fam107b,LOC102787157 coding upstream 289594 19697431 ~ 19706930 (+)
AMCG00006787 NA coding downstream 16197 20015945 ~ 20047024 (+)
AMCG00006791 NA coding downstream 262552 20262300 ~ 20262799 (+)
AMCG00006792 shank3a,LOC107710388 coding downstream 344653 20344401 ~ 20355364 (+)
AMCG00006794 NA coding downstream 531607 20531355 ~ 20535351 (+)
AMCG00006793 NA coding downstream 544729 20544477 ~ 20562876 (+)
G112380 NA non-coding upstream 13228 19983005 ~ 19983296 (+)
G112350 NA non-coding upstream 55549 19940493 ~ 19940975 (+)
G112305 NA non-coding upstream 350568 19643651 ~ 19645956 (+)
G112302 NA non-coding upstream 361300 19633239 ~ 19635224 (+)
G112295 NA non-coding upstream 368360 19626813 ~ 19628164 (+)
G112424 NA non-coding downstream 276245 20275993 ~ 20276232 (+)
G112430 NA non-coding downstream 538195 20537943 ~ 20538220 (+)
G112435 NA non-coding downstream 563309 20563057 ~ 20563275 (+)
G112436 NA non-coding downstream 563750 20563498 ~ 20563788 (+)
G112438 NA non-coding downstream 565778 20565526 ~ 20571427 (+)
AMCG00006672 NA other upstream 6057049 13933666 ~ 13939475 (+)
G111197 NA other upstream 6953076 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 7344709 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 7673246 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 10428248 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 937749 20937497 ~ 20944977 (+)
G112567 NA other downstream 1048588 21048336 ~ 21049038 (+)
G112600 NA other downstream 1143117 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 1265505 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 1617884 21617632 ~ 21622508 (+)

Expression


Co-expression Network