AMCG00006787


Basic Information

Item Value
gene id AMCG00006787
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20015945 ~ 20047024 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006787
CCAGCCCACGACATCAGTCTGGAGGAATTCGATGATGAGGACTTGTCAGAAATTACAGATGATTGCGGGATTGGACTAAACTATGACTCAGACCCATACGAGAAGGACTGTCTCATCCTGGAGAAGAGCGACCTCCACCACCCGGTGTGCTCCTTCCAAGACGACTTCCAGGAGTTTGAGATGATTGATGACAACGACGATGATgaggatgaagaggaggaagaggcgGACCCCGAGGCACCTCCCTCCCCTTCTGCTTCCCCTCCTTCCTCCCCATCCCTGGGCACCCTACACAAGAGCCGCCCGACCACACTGAACCTCACCACCACAGTCTCGCAGGATTCTTTGAATAACAATGGGAGTTTTTCTCCACGAAAAGCCAGCTGGCAGGAATCTCTTCATCACCCCTCTTCAAATGgACGCTTGTCTCCATCCCATTCTTGCCTTGAAGATGGTAGCCATGTCAATGGCCAGTGTGCTGCAGCACCAGGCTCTGGGTCACAAAGCAAAGGTACAACCCCAAAACAGTCAGGGGACACTGAGCAGTCACAGTCACCACTCAGGCCCCTCCTGTACGACTTTGAGGGCAACAGACGGGAAACGATGGAATACGGGTCTTTTGGTCAACATAAAATGTCCACAAGCTCAGATGCTGGAGTGGATCCCAGTGCTGAAGGTGCCAGTCCAGGCATAACCATACCAGTGATAGATGAAGTCTCTCAGAGCTCTGATACTGAAGTTGACCATGACCTTACCAGTGACTATGCCAAACAGTGGGGGTGCCAATCTAGAACGGCCAATGATACTTACACGGTCACCTCCAAGTCAGTGGTCGATCCAGATTTAGAGAATGACATAACTTTAGATGGCACGAGTAAGTGCTTATCTTCTATTGCACCAGCAGGTAATGATGCTGGAACTCCCTTATCAGATGAAGAACTAGAAAAAGACTTTGACGTTGACTTTATGTGTAAAGACAGCTACGAGTTGGACTCCAAAGAAACTGGGAGCTCCTCTTACATTGAGTTCCCTCCAATCGAGCCCACCTCTTTCTCTAGTTACATGTCCTCTGCCCATCCATCAGAAGCTGATTTAGATGTATCCCATAGTAACCATATCGCAGGTCCACGTGGTCATCCGTCCTCTTCTTCCAATGATACAAACTCGCCATCCTCGGACCCAGGCATTGAAGCTGACCTCACCAGTAAGAGCTGTAAAAGGTACTTGCTACCCGGTCATAACATAGACGAGCTGAGTTCTCCCGGCTCCGATTCAGACATTGAGGGAGAGCTAGAGGCGGCATTTGCCTGTGGAGGGCCCTTAGTCAGCAACATGATCTCATCCATCTCGGAGACAGAGCTAGACCTCACGAGCGATAGCAGCAGTGGCCGGTCCTCGCACCTCACCAACTCTATCGAAGAAGCCAGCTCTCCCACATCGGATCAGGAGCTGGACACGGAGTTAGAGGCAGAAAGTGGGATCATTGGTATCAAGACCTCCCTCCTTCTTGGGCAGCCTGATCTCAATAAGGTTACTTCACCGACAATTGAAGCTGAGGTCCTAACGCGGTTTGATGACAGTCAGGCATTGATGGGTCTACAGAATGTTGATGATCTTGTTTATGAACACACTGCGGACCCGGATGAAACGCTCCCTCCGGCCAACCAAAGCGAAGATAGCCTCTCGAGACACTTAGTCCTGAAGATTGAACCTGACCATAGCTTAGAGAGTTTCAAGAGGTCCTTTTACCTGCCCATAGGACCAAAACTCATGCCTGAGGTAGACGATTACGAAGGGAACAGTGAGTATGACTCGGAATCAGAGTCGGAAGCAGATTTGAGCGAAGACTCTGATTCCCCCTGGCTATTGAGTAACCTTGTCAATAAAATGATTTCAGAGGGTTCTTATCCCATCAGCTGCCCAGAGGACTGCTTCAAAAGGTCTGGCTCCATTTCTGACACGATTTCACCCACGTCAGATTTGGAGACAGATGCTTTTAATGAGCCTTTAGACAGCCAATCCCAAAAGCTGAAATCAAATGGTGACACGCAGGTGGAAAGCTTTGACAAAGGCTacttaaataatgaaatgacaaAAGAGCAGGGTTCGAGTAGGGAAGCAGAAAGCTTTGAGGGCTCTTGTGACCCAAGAAGCACAGCCAAAGACAAGAACAGCTCTGAATGTAAACTGACTTCAGCTGAGACCAATGAAATTGTAGGCCCGTGTCTGTATATGAGTAATCCCACCTGTGACACAATCACTCCAGTCTTTGTGGATCGATATAATGGCAGCGTCAGTGCGCTCAAAGCAACAAGCCAAGGAACCTATCTTCCTATCTTAACCTTTGATAAAGACATTGACAGCTCTTCTGTTGCTAAGTCGTCTAAAAACCTCAAAGAAGAAATATTAGAGCCCGATAATGATTTATCCGCCGGAGCCAATGAGCCTGTGTCTCCGTGTCTTAGTGAGAACTTGGAGAGTGATAAAGATGAAGGCCGCGAACTCAAGGAGGACACAAGCTCTTTGGACCGCATTAAGGAGGCTAAAAACAGCCTGACACTAGATCTTACCACAGCTCAGACTAACCGGTGCTTCAATCTGACCTATTCCACTGATAACGATGAGGAATCCTTTCTGGAGGGCATCAAGAGATCTCCATACAACGATCAGTACTTGGATGATTCTCCTACTTCTGAAGAGAACGGGGAAGACCTGCCACCTTTAAACCCTGTGGCAACCAAGCAGATGGATGAGTCCCTGGTCTATGACTCCATTAAGTACACCTTGGTGGTTGATGAGAACACCACTCTAGAGCTGGTCAGCTTGAAGAGATGCACCTCCATCCTGAGCGACGACAGTGAGATCTCTACCCTCTGCGACAACTGCGACCTCGAGGTGGATGATGAGTTTGGCGTCGACGGCGTGGGAGCAGAGATCCTCAGCTCCTCTGAAGACTCGTCCCCTGAAGCAGACGTGCCGTTCTCCAAGAAGTTCTTGAATGTCTTTGTGAACAGTACTTCCAGGTCATCAAGTACAGAGTCCTTTGGCCTTTTCTCGTGTACAATAAACGGAGAAGAAAGAGACCAGACACATAGAGCTGTGTTCAGATTCATCCCACGGCATGAAGATGAACTGGAGTTGGATGTGGACGACCCTTTGTTTGTAGAGGTGGAAGAGGATGACTACTGGTACAGGGGATACAATATGCgcacaggagagagaggcatTTTCCCTGCTTATTATGCCCATGAAGTAGTGGGCCAAGTCAAAGAATTTGTCGGGGTCAAGCGGGACACAGCTTGGATGGAGAGATTCAACGTTCAGTTCTTGGGCTCAGTGGAAGTACCTTATCATCAGGGCAACGGGATACTATGTGCTGCCATGCAGAAAATCGCAACTACACGGAAACAGACCGTCCATCTCAGACCTCCCGCCATCTGTGACCTGGAAATCAGCCTGCAGGGCGTCAAGCTCGTCATGAGCCTGGATGAGTTTGACGGCAATGATGAGttcgACAGGTGCAGTCACTTCTTCCAGATGAAGAACATTTCCTTCTGTGGCTGTCATCCTAAAAACAACTGCTACTTTGGATTCATCACGAAACATCCAGTGCTTAACCGGTTTGCCTGCCATGTCTTCGTATCCCAGGAGTCAATGCGGCGCGTAGCAGAGTGTGTGGGACGTGCATTCCAGGAGTATTACCAGGAGCATTTGGAGTACGCCTGTCCTACAGAAGACATTTACCTGGAGTAACCATACCCAATAACAACAACCTCCCCCTGACTCTGTATGTTCTTCAAGAATCCCACAAGGGGGCTTTCAGTAGCTGTTCTCTTTTGTAAGATACCTTCTTTCTGAACTgggatgcttttttttcttcttcttcttcttgttccTCTACCTTTTAGACATCTTCAGATCGAATGTGCATTGATTTCAAATTTCCCCCTCCTTTTTCTACAAGTTAGCGGGTACATGGGGTGGCTGAGGAACAGTGCttttgaagatattttttttcttcaatttaaagatgaacaaaacaaaactacaactACTTCTGTACATGTTTGACATTCATGCATGGCTTTAaggtgatacacacacacacacactcgcatacacacgcacacacctaCGCTGAAAATACAAGTATGATAGTATTCAGGGGCTAGAATACCCTTGATAAATGCAGTAGATAAACACATGATTTTGCAGCTGGTTGATCTTTGAGCCTTGAGTTGTAAATATGAATGAACTCAAAAGCTAAGCTAACTAGATTTCCACTGAGATAGTTGGTGCACCTGACTGTGCCAGTATGTGCAAATTGGAAATTAAGTCCTTAATTATAGGAATCGCTGGAGAAGAGGCACCATAAAAACAACAGCCAGTGTTCCATATGAAGcatagtgtaaatatatatatagacagagtAGAAAATAGAGACAGCTCATAAATCCATGAAATGTAAATTCACATTTACACTAACTGTCACACGGTCATGAGAGTTGATTTGGTGTCATTGTCTTTATTAAATGGCAGTACACCTGTCAGTGGCATAAGGGAGACATTTACGAAGGTCCAGTGAGAAGAAAGGAATGGAAATGACAGGCAAACATCACATTATCTGAGGTACAACTACCTAGTCTGAAAAGGCACAGAGCTTGTAAATATAAATGCGCTGATGCTTACCTCTTCTTGGCATCATTAAACTGATGTTATGGAGTCGCTGACAGATGGTTTCCATACATTGATCAGGATTATCCGAACCCAGTGGTGTAGCTACTGACAGTCTATCCTACACTGCGTCCTGGTTGAGCCTGTTTCTGCAATTTGAAAGAGGAGTGCAGTTATGCCATGGGGgtgagagggtgtgtgtgtatctataggACACTGATGTGTTCTTTTCTATCAGTGCTCTTTTCTATCAAGGAATATCGGTTTGGACGATGGAAGTGGACCTTGGTTTTTGTAAGCTTTGCCGAAAGGCTCAGGAAACGTATCCACTATACATGGTCCCTCTGTCGTTTCTTCTGTTCATCTCGCTGTGTGACTCTTTGTGTCTGTGCTAGCTGgatgttttccatttctgtgTGTAGCCAagtaaaagagagagaaaagaaatgcagttgGCCCCCCGATGAGTATTTCTTTGGCGTATAGATACTGTGTGTTGTAGCATAACAGTGATTGGAATGTGATAAGGTATGATCAGAAACTCTTCCTTCATGCGCATTACAGAAATCTCTCTAAACCTTTTTGAATAGGAGACTGTACCGCTgccagtttttctttcttttctgacAATTGTTCTACCACATTCCCTCCATCCATATTCATAGAAAAGACTGGTCTTCTCTGAAGAAGCTGAGATGCTTTAACACAAAGctgaatgaagaaagaaagaccTTTGTCTAATGCTGTATAATTTCATATTTGGGTCGTACTGGGGAATTAGTGTTGTTGCTTTGCGCCGGTCACGGCTCGGTTATTTCTGACTAACCTGAGGCAGTAATAAGCTGGTGACAACAGGAAATCTGCATGACTTTTCACATCAACAGCCTGCTAGCAAAATTGTCTTGCCTGTAGGAATACAAGAAAATGTTACTCGTATGCTTCTGTTCATTTACTGTGGGTTTCTTTAATGAACAACATAATAAACTGATGTAGTTTACCATACGTCtgtacttttataatatattacaaccgttatgtaatattttagcCTTTAAAGTTCTGTGGATATCTTTAGTGGAGATGTACAAATGCTTCTTGGTGTTTTACAGAACAATATTTAAACCATAGGTATGATAgatcaaaacaaccaaaattgtagcaaattagttaaaataaaaataaagataacatGCAAAAAGATAACAAGATACCCCCctccataaaataaaagatatataACCTTGATTAAAAAGTCTTAGGTATTGCTGACTCTACGTTTACCTTCATATCACCGACTTTCACACAGAAGGTGAAATGGAATTCTATACTGATATATAGAAGTAGAAACATAGATATCGAGTTTCTATGCCTTTCACCGCAGTGTTTCATAATATGTGAGcgttcctcctcctcatctctctctctctacctgccCAGATGGGTTGTCCCTGGGGGGTTTGTGACCTCACCACTCTTGCTTTAGACTCGGCACTAAGACTCTCCTCTACCCTCTGCAAGGCCACAGTGTCTCGGCAAAAGAGGGGACCCCAGACCAAACCAACCAGAGTGTAAATGGACACAGCAGGCAGACATGTTTTGTATGACAGACGTGTATTGTGAAAGAATAGGCCTCCTTAAATCAATATtcctgattgattgattgatatatatgtatgagaGAAACAGATGCACATACTTTTGTTagtgtttcgtttttttttctcagactATCACATTTGTCATTTGATACCATATTCCTATATACTCATGGCTTTACAGAATTGTGACTGAATTTCTGAACTAGAGCATACACTAGAAATGGCACTTTGATTTTTGCTTATACAGATATAAAGATCTAAAGATCATTGGAATTGACTGGTCAGGGGTCAGGGACTGCCCTGTTCATTCAAAGCCCGATTCTTGTCAATGGTATAGTCACTGTGCTGTCAGAAGGAATTAGGCCTTATGTTAAGAGtactttaaatgaatgaaaataaatacatcaaaagcAGGGCCTCCTGACCTAACAGCTGGGAGTTTTCCTCTGTGAGGGTTTTTCTCCTCTCTGTGGTAGCTCAGCTGTCACATGATGATTGCCTCATCATAAGACTTGACTTCACACATCCCATAGTGCAGCATCCAGTCTGCATGCAGCTCAACCTCATCTGGAGTGTCACATGTCCTGAGCTACACACCTGCTTGTGATAATTGTGGCACAGTTAAATATGCAGGATTTATGCAGTCGCCACGTCCTGCCCTGTGGAACCTCAGGCTTCAGTCTTTAAAAGAATGCATGCCCTTCCTTGGGAATGACAAGATTTcattgcatgttatttttttgtttctcacatTTATGAAATCGTAACATAATATACGGTGCCTTTTGTCTTCAGTTGCTTCTGGTCTTGAGTGTCTGTCATGCAGGAGTTCACCGTGAGAGAGAATTAGTGTGTGCCAGAGGAATCTCATTATGGTTAATtgggtgttttgtttaattttgatgtatttacttttattttattttttcattgctttgtattatttattaatttgtattttaatagctAAAGGTCATTCTGAGGTATGTACTatatggagtttttttttttttttagttttttttagcaGTATCAGTTTCAGAATGTGAATGAAGAAATGTCTATTTAAATTTGCAGTATAAATAGGATTAATATGTCTCCTTTGTACACtctttaaaagtacatttcGCTTTCCAGTTATGCCTGCAGCAAGAAacaaaagattaattaattcactagtcacaacaacaataataataaaaaagtgtttctgTAATTTGTTTCCTGTGCACAAAAGAGTTCTGGAAATAATACTTTTCCATGcttgttttacataaatacttgcatataattaacttaaaaacaacTCTACATTGAGTATgtaacacagaaaacataagTCATTTGTAATGGTAACCATATCTTCTAATTGAATACATGTAAGGCCTATGCAATAGTTTGATGTAGACAAAATGTTTGGTGAGGAATTATAATGTGGTACAAGTCTGCGCCTGTAGGCCCGGAGAGGGAACATTTTACAAGATATCAAGCTAATGGTTAATACTGTTTTTTCCTGAATTTATAGTCATTTTAAAGTGCGCTTGTTGGACATGTACCATAATCCTCCATCCACAAGGAACTCATATAATCCTGCATGAGTCATgattactgtatttgttataaGCTTTCCTTTTATGTAACATCTCTCCTTTACATTTACCAAAACATGCTTGTAGGTTCATGGGAAGGGCCAACCGAACTATGACGAAACGTAAGACTTTATACATGAACCGACAGTCGGTGAACACCACgcaaatattgcttttttattccTCATCTCAGTGTCACATGAGCCAGGATTATGTGGACTTGCAGTCGTTTGGCAAAGTCCCCGACGCCCGTGCTAGGGCTTTTGAAGGGAATACAGTATTTGTAGTCACAACATAGACAATGTGGAGACATTTACAGACTCCGAGGAACCCTTCAAATTAGAGAAATAAAGGAAATCGCCTCCTTCCTTCAAGATGTTCATTTTTAAGAGTTTCCATGGTAACCAATAGTAGTGAGTGGAAGTTAGTTGTGACTGGAAtattaatggattttaaaaaaagaGGTTCAAAGGAAATCACTTCGTATATGTTGTTTGCTAGATCACTGTACATCTAGTATAACTCATGCTGTGTAGTTTGTTATGCTAcgttaataaaataactgtgaaataaaaacaatcttcaaTTTTTCAGATGTATCAAAATCTTATTGGACAAAGCTATACTGACACTTCTGTTTCTCATATATGAGTTATGTatcaatttatttcagttctgcACACAGACGGTGTTTATTAAGGTGTTGATTATCAGCTGTCTTTATCATCTTCTTCATGTCTCACCATGTGATATGCAAGATGCATTTTGCACGGGCACTGACACTCACGTtgtgcagcagtgtgtgcaAACATGTCTCTTTTTTCGTGCAATATTAGGATTGTGTGGCAAGAGACATGAATGTAACATCTCAAGAATTTGTGTGTCAACGAATGTGATTTATCCAGCTCCAGGGTAGTACACATCTATTGTAGAGCTGCGTAGAAACAACCTGTATTTAAATAAGAACTTGTACAGCATTTGCTTTCATGACAATAAAAATCCTATTGCATATTGCTAGTGTATTCCATTCAAACGATTCCCTTTGCTTTGTACTCCCGTCAACATGACCAATCTCTCATTTTGATGCAAGAGATTTTTcggcattttaaaaatctaacaGCTACTTCCCTTTGCCCGTTCCCTTTCTGGTAGACACCCAGACTCCAGGATTAATTTAGCCTGTATAATCCATAACGGTGTAACTTTGGAATTAAACTGAGATTCTTCACTGTACAACTATAACACATCAGTATGTAATAAACAATATCTATCttgtatcttaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K04435 MAPK8IP2, JIP2; mitogen-activated protein kinase 8 interacting protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006787 True 9156 mRNA 0.42 12 20015945 20047024

Neighbor

gene id symbol gene type direction distance location
AMCG00006786 NA coding upstream 16197 19996524 ~ 19999748 (+)
AMCG00006782 sephs1,LOC106573416 coding upstream 44547 19966029 ~ 19971398 (+)
AMCG00006784 NA coding upstream 60106 19949141 ~ 19955839 (+)
AMCG00006781 NA coding upstream 82749 19884722 ~ 19933196 (+)
AMCG00006783 NA coding upstream 141356 19872006 ~ 19874589 (+)
AMCG00006791 NA coding downstream 215276 20262300 ~ 20262799 (+)
AMCG00006792 shank3a,LOC107710388 coding downstream 297377 20344401 ~ 20355364 (+)
AMCG00006794 NA coding downstream 484331 20531355 ~ 20535351 (+)
AMCG00006793 NA coding downstream 497453 20544477 ~ 20562876 (+)
AMCG00006797 LOC104957567 coding downstream 573718 20620742 ~ 20628623 (+)
G112380 NA non-coding upstream 32649 19983005 ~ 19983296 (+)
G112350 NA non-coding upstream 74970 19940493 ~ 19940975 (+)
G112305 NA non-coding upstream 369989 19643651 ~ 19645956 (+)
G112302 NA non-coding upstream 380721 19633239 ~ 19635224 (+)
G112295 NA non-coding upstream 387781 19626813 ~ 19628164 (+)
G112424 NA non-coding downstream 228969 20275993 ~ 20276232 (+)
G112430 NA non-coding downstream 490919 20537943 ~ 20538220 (+)
G112435 NA non-coding downstream 516033 20563057 ~ 20563275 (+)
G112436 NA non-coding downstream 516474 20563498 ~ 20563788 (+)
G112438 NA non-coding downstream 518502 20565526 ~ 20571427 (+)
AMCG00006672 NA other upstream 6076470 13933666 ~ 13939475 (+)
G111197 NA other upstream 6972497 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 7364130 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 7692667 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 10447669 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 890473 20937497 ~ 20944977 (+)
G112567 NA other downstream 1001312 21048336 ~ 21049038 (+)
G112600 NA other downstream 1095841 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 1218229 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 1570608 21617632 ~ 21622508 (+)

Expression


Co-expression Network