AMCG00006790 (cpt1b,LOC100329197,LOC106573415)


Basic Information

Item Value
gene id AMCG00006790
gene name cpt1b,LOC100329197,LOC106573415
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19971627 ~ 19981435 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006790
GGCGAGGGCACAGGGCAGGACATAGCCACTGAGTACATACAGAGCACTGTAGTCTGAAGGACACTGAAGTATAGGGAGACAAGCAAACTGGAGAGTCTGCAGCTGAACTCTGTACAACTCTTTCCCAGCCATTCTGTATCTTGAGGTGTGCGTTATCTCTACTGCACAGCAAGGCCGTTAGCTGTGCAGGATGGCGGAAGCTCACCAGGCCGTGGCCTTCCAGTTCACCGTCACTCCGGACGGCATCGACTTCCACCTGAGCCGAGAGGCCCTGAAACATGTGTACCTGTCCGGGGTGACGTCATGGATGAAGCGCTGTAGCCGATTCAAGAATGGCGTCCTGACTGGTGTCTACCCTGCCAGCCCGTCCAGCTGGCTCATAGTGGTTATTGCCATCATGAGCATCATGTACACGAAAGTAGACCCCTCCATGGGCGTGATCGATGGCATCAAGAAGACCCTACCCGTGAGTGGCTATCTGACTGTTCAGACCCAGACTGTCCTGAGCGCCATGCTGTTTGCAACGGGTCTGTGGCTGTCTCTCATCATGATTCTGCGCTACACCCTCAAACTGCTGCTCTCCTACCACGGCTGGATGTTTGAACCTCATGGCAAAATGAGTATAACCAGTAAGATCTGGGCGAGTCTGGTGAAGATGTTGTCTGGACGCAGGCCTTTGCTCTACAGTTTCCAAGCGTCTCTTCCCAGGCTGCCGGTCCCCAGCATTGATGCCACCATGACAAGGTACCTTGAGTCCGTCCGCCCCCTGCTGGATGATGAGCAATACAACCAGATGGAAATGGTTGCCAACGAATTTAAAAAAGATCCTGCTCCAAAACTACAGAAATACCTCATCCTAAAATCCTGGTGGGCAAGCAATTATGTGAGTGACTGGTGGGAGGAGTACATTTATCTCAGGGGCAGAGGTCCCATCATGGTCAACAGCAACTATTACTCCATGGATCTGTTGTACATCACTCCCACCCACAGACAGGCCGCGCGGGCTGGGAACGCCATCCACGCCATGCTGCAGTATCGCCACAAACTGGACCGTGGGGAGCACGCGCCGATAAGGGCATTAGGTATCGTGCCCATGTGCTCCTATCAAATGGAAAGGATGTTCAACACATCTCGGATTCCAGGAGTGGAGACAGATTTTGTGCAGCACTTGAAGGACAGGAAACACATGGTGGTCTATCACAAGGGGCGCTACTTCAAGGTGTGGCTGTACCACGGGGGGCGCCACCTGCGGCCCAGCGAGTTGGAGATGCAGTTTCAGAAGATCCTGAATGACAAAACCGAACCCCAGCCCGGAGAACTGAAACTAGCAGCCCTCACAGCAGGGGAGAGAATTCCTTGGGCCAAGGCTCGTGCCAAGTTCTTCAGTCAAGGCACGAACAAGATGTCCCTTGATGCCATAGAGAAAGCTGCCATTTTCTTGACTTTGGATGATGAAACGCATGGATATGAGAAGGAGAAATTGAGATCCCTCGATTTGTACGCCAAATCTTTGCTGCACGGGAAATGTTATGACAGgTGGTTTGACAAGTCCTTCAACCTCATTGCCTTCACCAATGGGAAACTGGGGATCAATGCAGAACACTCCTGGGCTGATGCACCAATTATTGTTCACATGTGGGAGtatGTTCTAGGAACTGACAGTTTTCAGTTGGGCTACACAGACGACGGGCACTGCAAAGGAGAGATGAACATGAACCTAACCCCCCCCAGCAAGCTACAATGGGACATTCCACAGGAGTGCCAGGATGTTGTGGAGAGCTCTTATAAAGTTGCCAAGGCAATAGCAGATGATGTGGATTTTCACGGCTGCCTGTTCAATGAGTTTGGGAAAGGCCTGATTAAGAAGTGCAAAACAAGTCCTGATGCCTTCGTCCAGATTGCTCTACAGCTGGCGCATTTCAGGGACAAGGGTGAGTTCTGTTTAACATACGAGGCTTCAATGACGCGCCTGTTCAGAGAAGGCCGAACAGAAACGGTGCGCTCCTGCACCAATGAATCGACAGCGTTTGTCCGGGCCATGGAAGACTCAAACAAAACTAGTCAAGAGAGACTGCAGCTGTTCCACAAGGCAGCAGAAAAACACCAGCATATGTACCGCCTGGCGATGACTGGAAAAGGCATTGACCGGCACCTCTTCTGTCTCTATATTGTGTCCCAATACCTAGGAATCGACTCCCCCTTTCTCAAACAGGTGCTTTCTGAACCCTGGCGTCTGTCCACCAGTCAGACCCCTCAGCAGCAGCTTTACCTGGTCGATTTACAGAAGTACCCAGATTTCATCAGCGCTGGAGGGGGATTTGGACcaGTAGCTGATGATGGGTATGGTGTTTCATACATCATTGTAGGGGAAAACCTCATCACTTTCCACATTTCCAGCAAATTTTCAAGCCCAGAGACAgactCGTATCGATTCGGGCAGAATATTCGTCAGGCGATGCTGGACATCAAAGCTTTATTCGACGTCAAGAACAAGAAAATATGATCCTCTTGTTGTTCCTGTTGTGAATACTTGAAAATGAATATACCACATTCACTGAGATATTAGtcaaatatacatgtacatattgtaGGTTTCTTTAAGTTTGATCCTTGAAGATTAAATGGATATAACTTAATGACAATGAGCAGCATGTGTTGATGTTGTTGaccaaaagtaatttaaaaaagcaacaattcAAATGCTGGAAAGTCACCTGGCTACACATAAAATATCTATCCAAGTTTAAGACTCTCATGACAAATATCAACtatatttcagtgtgtgtttgtggggggggggattgacaatttaaaaaagcctCCAATATCATCATTGCCTTACAGAACAGTGCTATAATAATGCAGAAATGACCCAGGACACAGGCGATCAGGATTTCTCAGGTAAATTTAGATTCCTgatgtaaactttattttttatttgaattcagtGTTTGCAGTTCATCACATTAAGGCACAGTAAACAGTATTTTGTCTTCTTTAGCAGGCCTTGTGAAAGCATTATGCTCATCTACTAAGAATATGCTTATGGATTACTTACCAATAAATGAGTGAATTCCACATTCACAAATGTATTGCTAGATTATGTAGCAGGTGAGACATAACtaagttttttttgttagtttttt

Function

symbol description
cpt1b Predicted to enable carnitine O-palmitoyltransferase activity. Acts upstream of or within response to (R)-carnitine and response to bacterium. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Is expressed in female organism and liver. Orthologous to human CPT1B (carnitine palmitoyltransferase 1B).

NR:

description
carnitine palmitoyltransferase I-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0004095 carnitine O-palmitoyltransferase activity molecular_function

KEGG:

id description
K08765 CPT1A; carnitine O-palmitoyltransferase 1, liver isoform

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006790 True 3146 mRNA 0.47 19 19971627 19981435

Neighbor

gene id symbol gene type direction distance location
AMCG00006785 prpf18 coding downstream 23930 19941057 ~ 19947697 (-)
AMCG00006780 NA coding downstream 190274 19679601 ~ 19781353 (-)
AMCG00006777 LOC107743993 coding downstream 324737 19643618 ~ 19646890 (-)
AMCG00006776 NA coding downstream 378396 19569734 ~ 19593231 (-)
AMCG00006775 NA coding downstream 563651 19403281 ~ 19407976 (-)
AMCG00006788 NA coding upstream 731 19982166 ~ 19984437 (-)
AMCG00006789 NA coding upstream 5312 19986747 ~ 19999501 (-)
AMCG00006795 LOC102794702 coding upstream 66506 20047941 ~ 20053808 (-)
AMCG00006796 rabl2b,rabl2a,LOC107662875,LOC107600941 coding upstream 593362 20574797 ~ 20578476 (-)
AMCG00006799 odf3b coding upstream 630935 20612370 ~ 20617950 (-)
G112292 NA non-coding downstream 401955 19568517 ~ 19569672 (-)
G112290 grm3,LOC107090533,LOC106924857 non-coding downstream 405612 19564956 ~ 19566015 (-)
G112289 grm3,LOC108263977,LOC108444204 non-coding downstream 429659 19541103 ~ 19541968 (-)
G112288 LOC108263977,LOC105018424 non-coding downstream 433834 19537205 ~ 19537793 (-)
G112287 NA non-coding downstream 456623 19514799 ~ 19515004 (-)
G112410 NA non-coding upstream 97456 20078891 ~ 20079411 (-)
G112496 NA non-coding upstream 732648 20714083 ~ 20756786 (-)
G112557 NA non-coding upstream 1015831 20997266 ~ 20997529 (-)
G112562 NA non-coding upstream 1033938 21015373 ~ 21016048 (-)
G112563 NA non-coding upstream 1035766 21017201 ~ 21017740 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other downstream 335702 19633093 ~ 19635925 (-)
AMCG00006773 tmem243b,tmem243 other downstream 339732 19623155 ~ 19631895 (-)
AMCG00006754 NA other downstream 1605065 18339270 ~ 18366562 (-)
G112059 NA other downstream 2338182 17632891 ~ 17633445 (-)
AMCG00006719 NA other downstream 4074758 15881130 ~ 15896869 (-)
G112420 NA other upstream 254421 20235856 ~ 20236206 (-)
AMCG00006807 NA other upstream 665885 20647320 ~ 20653659 (-)
AMCG00006813 NA other upstream 872622 20854057 ~ 20964562 (-)
AMCG00006841 NA other upstream 2149060 22130495 ~ 22197664 (-)
AMCG00006854 NA other upstream 2971741 22953176 ~ 22958306 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012609 BX276107.1 coding NC_007129.7 CM002902.2 8339596 ~ 8367566 (+)
grasscarp (Ctenopharyngodon idella) CI01000013_10828622_10836409 CPT1, CPT1B coding CI01000013 null 10828531 ~ 10837146 (-)