AMCG00006792 (shank3a,LOC107710388)


Basic Information

Item Value
gene id AMCG00006792
gene name shank3a,LOC107710388
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20344401 ~ 20355364 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006792
ATGATGTGGTGCTGCTTTCATTCAGAGCCCAAGTTTATAGAGgCTAACTTGAAGAAATTTATGGAACATGTCCAACAGAAGAACATTGAAAAAGTCTCAAAATTCCTGGACAGAGGGCTTGATCCAAATTTCCATGACCCCGACACAGGAGAATGCCCGCTGACGATGGCTGCTCAGCTAGAGGGGTGTGCGGAGGTGATCAAAGTGCTGAAAAATGGCGGGGCCCATTTGGACTTCAGGACGAGGGATGGAGTAACAGCTCTGCACAAGGCGGTGCGGACCAAAAACCACACTGCCCTCATTACGCTGTTAGACCTGGGAGCTTCTCCTGACTATAAGGACAGCCGGGGTCTCAGTCCACTCTACCACAGCTCCATGGTGGGAGGAGACCCCTATTGCTGTGAGCTGCTCCTCCACGACCATGCGGTGGTGGGCTGTGTGGACGAAAACGGCTGGCAAGAAATTCACCAGGCCTGTCGCCATGGGCACGTTCAGCACTTGGAGCACCTCCTGTTTTATGGAGCAGATATGAGTGCGCAGAACGCCTCGGGGAACACCGCTCTCCACGTCTGCGCCCTCTACAACCAGGTAAGAGGGTAG

Function

symbol description
shank3a Predicted to enable ionotropic glutamate receptor binding activity and synaptic receptor adaptor activity. Acts upstream of or within brain morphogenesis; intestinal motility; and swimming behavior. Predicted to be located in cytoplasm; membrane; and synapse. Predicted to be integral component of membrane. Predicted to be active in dendritic spine and postsynaptic density. Predicted to colocalize with postsynaptic membrane. Is expressed in brain; forebrain; hindbrain; and midbrain. Human ortholog(s) of this gene implicated in Phelan-McDermid syndrome and schizophrenia 15. Orthologous to human SHANK3 (SH3 and multiple ankyrin repeat domains 3).

NR:

description
PREDICTED: SH3 and multiple ankyrin repeat domains protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006792 True 600 mRNA 0.54 5 20344401 20355364

Neighbor

gene id symbol gene type direction distance location
AMCG00006791 NA coding upstream 81602 20262300 ~ 20262799 (+)
AMCG00006787 NA coding upstream 297377 20015945 ~ 20047024 (+)
AMCG00006786 NA coding upstream 344653 19996524 ~ 19999748 (+)
AMCG00006782 sephs1,LOC106573416 coding upstream 373003 19966029 ~ 19971398 (+)
AMCG00006784 NA coding upstream 388562 19949141 ~ 19955839 (+)
AMCG00006794 NA coding downstream 175991 20531355 ~ 20535351 (+)
AMCG00006793 NA coding downstream 189113 20544477 ~ 20562876 (+)
AMCG00006797 LOC104957567 coding downstream 265378 20620742 ~ 20628623 (+)
AMCG00006798 lamtor4,si:dkey-159a18.7,LOC107557308,LOC107590499,LOC107694163 coding downstream 289865 20645229 ~ 20647241 (+)
AMCG00006801 NA coding downstream 311984 20667348 ~ 20674351 (+)
G112424 NA non-coding upstream 68169 20275993 ~ 20276232 (+)
G112380 NA non-coding upstream 361105 19983005 ~ 19983296 (+)
G112350 NA non-coding upstream 403426 19940493 ~ 19940975 (+)
G112305 NA non-coding upstream 698445 19643651 ~ 19645956 (+)
G112302 NA non-coding upstream 709177 19633239 ~ 19635224 (+)
G112430 NA non-coding downstream 182579 20537943 ~ 20538220 (+)
G112435 NA non-coding downstream 207693 20563057 ~ 20563275 (+)
G112436 NA non-coding downstream 208134 20563498 ~ 20563788 (+)
G112438 NA non-coding downstream 210162 20565526 ~ 20571427 (+)
G112465 NA non-coding downstream 283332 20638696 ~ 20638986 (+)
AMCG00006672 NA other upstream 6404926 13933666 ~ 13939475 (+)
G111197 NA other upstream 7300953 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 7692586 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 8021123 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 10776125 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 582133 20937497 ~ 20944977 (+)
G112567 NA other downstream 692972 21048336 ~ 21049038 (+)
G112600 NA other downstream 787501 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 909889 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 1262268 21617632 ~ 21622508 (+)

Expression


Co-expression Network