AMCG00006793


Basic Information

Item Value
gene id AMCG00006793
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20544477 ~ 20562876 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006793
ATGAAAAAGTTTGCCTCGAATCGCAGCCTCAACAAGCTGCTCCAGCAGTGCGAGTCCTCCAGCTCCCCCGAGTACGACGAGATCAAGGCCGTGGAGAAGAAATGGCACCTCCACGTGGGCAGCGCCCGCAAACTCCTGGGAAAGAAATCCAAAGTGTCTTCGCTTTTCATTTCagctcccccacccccaaagaGGGCCCCCAGCACCACCCTGACCCTGCGCTCCAAGTCCATGACGGCcgagctggaggagctggAGAAACTGGATGAAATGCTAGCTGCTCAGGAACCCATCCTGAGACCAGAAGTCGTAGAGGCCGACTACAGAGCTGCCACAGTGAAGCAGCGCCCCACGAGCAGGCGAATCACACCAGCAGAGATCAGTtCACTGTTTGAGCGTCAGGGAATGCCTGTACACTCTGGCCTTCCTCCCGGAGTGGAGAAATCCCACATCCCATTGCCAAAAGGAATGCCCCGAACTAAATCCGTAGGGGCTTCGGAAGAGGACCGCTTATCTACGTCTGCAGGGGAGCCGCGCTTTCCAAGGAGTTCGTCAATGACAGACAGCCTTAGGGACAGTCACAGTattcctccccctccccaaactgcccctcctccacctccatCTCCTTATTACTTGGATACAGGGCCTCCCCCGGCCTTctgtcccccccctcccccaggtcGAGGCCATGATCAGACACGATCCAGCTTTAAACCTGGTTCAGAGGCCAAGATCCATGGTCTGCCACAGGTAGTGACTACTGCTGAAATCTACGAGCCGCCCCGGCCTTCACCTGCCCACGTCGAGCGCCAGAAAAAAGCCCGATCCATGATCATCCTCCAGGACTCCTCCCACATTCCTGTGGAGCCCACAGACATCCCACGGCCTGGGCCCTCGGCCACTCCCCCTGAAAAGATTAAGAGGAAAGGGAGGGTTATTGACAACCCTTATGCTAATGTTGGTCAGTTCAGTGTAGGGCTGTACACCCCCACCAAACCCCAGCGCAAAAAGAGCCCCCTGGTTAAGCAGCTGCAGGTAGAGGATGCCCAAGAAAGAGCATCCTTAGCTTTTGCTTCTGCTCACGCCAGAGAGCACTCACcgacaggcagacacacaagCAGAGCCGACTACCAGCAACAGCATCAGCAGTTCATACAGGAGAAAATTCGAGCCCAACTGGAAGGAAAAGGCCCTTTTGCTGCTGCCATAGCAGGAGCtgtgaaagacagagagaagcGACTGGAAGAGAGGAGGAAATCCACAGTCTTCCTATCTGTGGGTACCGTCGAAGGTAGCACTACAGTCCCAGAGCCCCCATCCCTGACGCAGTCCAGGTCCATCGATGAACGACTGCTGGGCAGCAGGGACCAGCTGGGTCAGCTACCTCCCCCAGCCCCTGCGCTCAGGCCTTCACCAGGTGGAACCACCTTCATCCATCCCCTCACTGGGAAGCCCCTCGACCCGAATTCGCCACTGGCACTTGCGCTGGCCGCAAGAGAACGGGCTCTGACTTCCCAGGCTCAGTCGCCAGCTGGCAGCCCAGAGCCTAGGACTAAACTGGATAAAACAGGGCCTTTGTTTGTGGAAACCCAGACCAAAGAGGCAGAGCGAATGGATGCAGAGGGCGGAGGGTTGATGACTCCCCCCTATGGGTCCTCCCCAGGTACAACAGCCCCTAGCAAGGACCAATGGGGGACCCCATCAACTCTCCGCAGGGAGATGGAGACAAGGACAGACAAGTCAGAGCAGAGAAAGATAGAGGACAAGAAGAGCATGATTATCAGCATCATGGATACATCCCAGCAGAAAACAGCTGGCCTCATCATGGTTCATGCAACTAGTAATGGGCAAGCAGTAGGGCTGGGTTTGGTGGAGCCTTCCATAGCTCCCAAAGGGGCTCTAGACGAACCCTCCAAGCTCACCCCAACTGAAGCGAAGCTCACCCAGCCACCAAGCCCCGCCGCCAAATCCACCCAGCAAGCAGCCAGCCCCTCAGCTGAAAAGACACTGGCtcaaggcagttcagaggaagAAGTGGAGCCCTATACTGTTACCCTCCCGCCTGCCCAGCTGTCCTCCAGTGATGAAGAGACACGGGAAGAACTTGCGAAGATCGGGCTCGTGCCACCGCCAGACGAGTTTGCCAACGGCGTCCTGGTGAAGGTCGCGGGCATGCCTATACCACAGCTGGCCAAGCCAATTGCACCTTCCGCCTCAACCcaagcagcaacagcagcagcagcagcagcacttcCTACTGCTGGTGGAACATCCTCAGGGAAGCCCTCAGACACCCCCTTGGTGCCTGAGTCTGCAGCCGACTCAGGAGTGGAAGAGATAGACACGCGGAGTTCCAGCGACCATCACCTGGAGACAACCAGTACCATCTCCACTGTCTCAAGCATGTCCACCCTGTCGTCGGAGAGCGGCGAGCCCACCGACACCTACACCTCCTTCGCCGACGGGCAGACTTTTATACTCGAGAAGCCGCCAGTGCCTCCAAAGCCAAAACTCAAGTCCCAGCTCAGCAAGGGGCCGGTGACCTTCAGGGACCCTCTATTGAAGCAGTCTTCGGATAGCGAGCTCCTCTCCCAGCAACACGTGGCCGCGCTGGCTGCAGCTGCCGGCACCGGCCGACCCCGCTACCTCTTCCAGAGAAGGTCCAAGCTTTGGGGGGATCCCGTGGAAATGCGGCCAATACCTGGGGCCGAGGATGGCAAGCCCACTGTGATCAGTGAACTGAGCTCCAGGCTCCAGCAGCTGAACAAGGACACGCGCTCCCTCGGGGAGGAACCGACTGGGGCCACACTGGATCCTGGAAAAAAGTCCCCTGTAGTGGGTGCAAGACTTTTCAGTAGTTTAGGAGAACTCCACACTATATCCCAGAGAAGCTACGGCACCACGTACACAATCAGACCAGGCAGCCGCTATCCTGTGACCCGCCGGACACCAAGCCCAGGCAAAGTCCCTGCTGCCGACAGGACAGACCCGCTGGGCCAATCGCGGTCCTACGGCCTGgccacctcccccaccaccccccccaccatccTCAAGTCGTCCAGCCTCAGCATCCCCCACGAGCCCAAGGAGGTGCGATTCGTCATGCGGAGTTCCAGCGCCCGGAGCCGGTCGCCCTCCCCGTCGCCCTCGCCCACACTGGGCTCCCCGCTGCACCCCCTGCGACCCTTCATCCAGAAGCCCCTCCACCTGTGGAACAAGTATGACGTGGGGGACTGGCTGGAGAGCATCAACCTGGGAGAGCACCGCGAGCGCTTCCAGGACAATGAGATCGAGGGCTCGCACCTACCCGCCCTGACCAAGGAGGACTTTGCCGAGCTGGGGGTCACCCGTGTCGGCCACCGAATGAACATCGAGCGCGCTTTGAAACAGTTGCTAGACAGTTGA

Function

GO: NA

KEGG:

id description
K15009 SHANK; SH3 and multiple ankyrin repeat domains protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006793 True 3408 mRNA 0.59 5 20544477 20562876

Neighbor

gene id symbol gene type direction distance location
AMCG00006794 NA coding upstream 9126 20531355 ~ 20535351 (+)
AMCG00006792 shank3a,LOC107710388 coding upstream 189113 20344401 ~ 20355364 (+)
AMCG00006791 NA coding upstream 281678 20262300 ~ 20262799 (+)
AMCG00006787 NA coding upstream 497453 20015945 ~ 20047024 (+)
AMCG00006786 NA coding upstream 544729 19996524 ~ 19999748 (+)
AMCG00006797 LOC104957567 coding downstream 57866 20620742 ~ 20628623 (+)
AMCG00006798 lamtor4,si:dkey-159a18.7,LOC107557308,LOC107590499,LOC107694163 coding downstream 82353 20645229 ~ 20647241 (+)
AMCG00006801 NA coding downstream 104472 20667348 ~ 20674351 (+)
AMCG00006804 NA coding downstream 112990 20675866 ~ 20692613 (+)
AMCG00006803 NA coding downstream 158927 20721803 ~ 20751442 (+)
G112430 NA non-coding upstream 6257 20537943 ~ 20538220 (+)
G112424 NA non-coding upstream 268245 20275993 ~ 20276232 (+)
G112380 NA non-coding upstream 561181 19983005 ~ 19983296 (+)
G112350 NA non-coding upstream 603502 19940493 ~ 19940975 (+)
G112305 NA non-coding upstream 898521 19643651 ~ 19645956 (+)
G112435 NA non-coding downstream 181 20563057 ~ 20563275 (+)
G112436 NA non-coding downstream 622 20563498 ~ 20563788 (+)
G112438 NA non-coding downstream 2650 20565526 ~ 20571427 (+)
G112465 NA non-coding downstream 75820 20638696 ~ 20638986 (+)
G112470 NA non-coding downstream 84502 20647378 ~ 20725442 (+)
AMCG00006672 NA other upstream 6605002 13933666 ~ 13939475 (+)
G111197 NA other upstream 7501029 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 7892662 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 8221199 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 10976201 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 374621 20937497 ~ 20944977 (+)
G112567 NA other downstream 485460 21048336 ~ 21049038 (+)
G112600 NA other downstream 579989 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 702377 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 1054756 21617632 ~ 21622508 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_11224779_11252341 SHANK3A, SHANK3 coding CI01000013 null 11224698 ~ 11253004 (+)
rainbow trout (Oncorhynchus mykiss) LOC110502025 LOC106573403 misc NC_048566.1 CM023220.2 76863449 ~ 77160850 (+)
mexican tetra (Astyanax mexicanus) G155366 NA non-coding NC_035914.1 CM008317.1 439115 ~ 439479 (-)