AMCG00006795 (LOC102794702)


Basic Information

Item Value
gene id AMCG00006795
gene name LOC102794702
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20047941 ~ 20053808 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006795
TGTGATACAAGTGCTCAGGTGACCGCTGCTGTGTCATATGACGTGCTatcattttaaacttaaattgttCTACCTACAGGCGGTAAACTAGTTAACAATCTtgtgttatattaaataaataataacaagaagaaagtatatacattttgatgaaGCTAGATTAATTATTCCTGGACAGCTTTGCCGAAGACAGAAGgatctttgttttaatgatccGCATAGATTTGGTGTAAAGTCACTTCCTTGCGTTTGTCGAGACACACACTTACTGTACGGACATTTCAAGGTGTCAAGATGCGTCTTCATGCAGTTTTGGTATTGTTCTGCCTGGGTCTGTCGCAGAAAGCCTTCTCGGTCTCACCTCCTCCaaacatcatcattattttcgCGGACGATCTGGGTTTTGGCGACTTGGGCTGCTTCGGACATCCGAGCTCCAGGACCCCAAACCTGGACAGATTAGCGGCCGGCGGACTGCGCTTCACTGACTTCTACAGCAGCAGTCCCGTCTGTAGCCCGTCCAGAGCGGCACTGTTAACTGGGCGCTACCAGACCCGCTCTGGAATATACCCGGGAGTTTTATACCCTGGGTCAAGAGGAGGGCTCCCACTCAATGAGACCACCATTGCCGAGATCCTGAAGCCCCTGGGCTATGCCACAGCTATGGTTGGCAAGTGGCACCTGGGCGTAGGACCCAACAGAACCTACCTGCCTATAAACCAGGGTTTTGACCAGTATCTCGGTGTGCCTTACTCCCATGATCAGggccCCTGCCAGAACCTGACCTGCTTTCCTCCAAACATCAAGTGCTTTGGGAAGTGTGACCAGGGCGTGGTGACCGTGCCCCTCTTTCTCAATGACAAAATCCAGCAGCAGCCCGTCCACTTCCCTGATCTGGTGGCATCTTACGACAAGTTTGCAACAGACTTCATCTCATCCTCTGCCAAAGGAAAACGGCCCTTCTTCCTCTACTATGCTTCACATCACACCCACTATCCCCAGTTTGCTGGTAAACAGTCGACGGGCCAGTCCCTGCGAGGGCCCTTTGGAGACGCACTGCTGGAGTTTGATAACACAGTGGGGGCTCTACTGGAAGCTTTGGTAGCCAGTGGCATCCAGAACAACACCTTTATGTTCTTCACCAGTGACAACGGGCCTGAATTGATGCGAATGTCCCGTGGGGGGAATGCCGGGCTGCTGAAGTGTGGGAAAGGCACCACTTATGAAGGGGGGATGAGGGAGCCAGCCATCGCATACTGGCCAGGAAAGATCCAACCAGGAGTGACGCATGAGTTGGCCAGTACGTTGGACGTCCTGCCGACCATTGCGGGACTCACAGGGGCTAAACTCCACGGTGTTCAGCTTGATGGATATGATATGAGCAACATCTTATTCAACAAAGGAATGAGTAAGAGAAACGCAATGTTCTACTACCCTACAGACCCCAGTGAGATGTATAGTGTTTTTGCAGTGCGGCTGGGTAAATATAAGGCCCACTACTATACACAGGGGGCTGGACACAGTGATACAACCCCCGATCATGACTGCCACTTTGATGCCCTTCTGAAGTCTCACGACCCACCTCTGCTCTTTGACCTCGAGTCGGACCCATCTGAGAACTACAACCTGGCGACCGCGAGCCACCCTGAGTACAAGGCGGTGCTGGTGAAGATTCTGGATGCAAAGACCCAATTTGAGAAGACCATGGTGTTCGGGGAATCCCAGGTGGGGAAAGGGTCCGACCCCGCGCTGGAGCCCTGCTGTGACCCGCAGTGCAGCCCCAAACCCACTTGCTGTGTCTGCAGATAGCGAAAACTGAAACCACTTCTAGCAGGGACTGTCCCTTTGCCTGTAAACCAGTCAGCACAATCCCCAGACAAATACTTGAGCTCTTTATATGTccttaacatactgtatattctCTCCAAGCTTTTTTTGCTGCAGTGCTCAATTTATACCACTTTTACCAGTTCAGCAAGAATTCCTGAGCTGTGATTCAGAGAAGCCGGTGTTTTTAGCTCAGTGTGATATAAATGTTGTACCTTTAGATCCTACAGGCTAACCATCAGCAATCAAAAACTTACTTAACACTGCACCGCTTCTTcagaaagataaataattaattttgaattttaacaCAAGCGATTCAATTCTCAGGGGTACACAGCCCATGGGTAATGAACTCACGTCTGTGCTCTAGTTGTAAATATGAGTCCAGACGAGTAATTTGCATTATGCATAAGCCATAATGACATTCTCCTCACTCATTGAGCAAGCCTCCACCTCCGCCCCCGCCCCCTGTATGCGCTCGACAATATGGGGAGAATtggtttacatatttatttatttattatgtttgtaattAATCGGGGTGTGTATTATTTAGTCTAGTTTTGAATCACCACATGCATGAAAGAAGTTgaagcattttatttcaaatgcgATCAAGTCCACTCATGTATGGCTTACTAAGAGTTTGACTCTCACTCCAACCTGATTCTAGtaagcaacattttcaaaaagatgTAGgcctagatcaaatcaaaacttacCTCCGTGCATATCGTACATTAGAAACTTGTACCTTATGactagaaaaatattttaatttgcagtttgcatgcaggtcaacattttgatttggtttgggCATCTCTCTACCTTCTGACTGTAAACGAGCAAGTAAGGCTCAGCCAATTGTAACATATGAGTTGATTGGtgtcatttaatatattataaaacaatttaacaattaa

Function

NR:

description
PREDICTED: arylsulfatase A-like, partial

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008484 sulfuric ester hydrolase activity molecular_function

KEGG:

id description
K01134 ARSA; arylsulfatase A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006795 True 2756 mRNA 0.47 8 20047941 20053808

Neighbor

gene id symbol gene type direction distance location
AMCG00006789 NA coding downstream 48440 19986747 ~ 19999501 (-)
AMCG00006788 NA coding downstream 63504 19982166 ~ 19984437 (-)
AMCG00006790 cpt1b,LOC100329197,LOC106573415 coding downstream 66506 19971627 ~ 19981435 (-)
AMCG00006785 prpf18 coding downstream 100244 19941057 ~ 19947697 (-)
AMCG00006780 NA coding downstream 266588 19679601 ~ 19781353 (-)
AMCG00006796 rabl2b,rabl2a,LOC107662875,LOC107600941 coding upstream 520989 20574797 ~ 20578476 (-)
AMCG00006799 odf3b coding upstream 558562 20612370 ~ 20617950 (-)
AMCG00006800 NA coding upstream 573724 20627532 ~ 20637604 (-)
AMCG00006805 zgc:77650,arf5,LOC107559620,LOC107599973,LOC105888566,LOC107599983,LOC105912562 coding upstream 602445 20656253 ~ 20666945 (-)
AMCG00006806 dennd6b coding upstream 635584 20689392 ~ 20707958 (-)
G112292 NA non-coding downstream 478269 19568517 ~ 19569672 (-)
G112290 grm3,LOC107090533,LOC106924857 non-coding downstream 481926 19564956 ~ 19566015 (-)
G112289 grm3,LOC108263977,LOC108444204 non-coding downstream 505973 19541103 ~ 19541968 (-)
G112288 LOC108263977,LOC105018424 non-coding downstream 510148 19537205 ~ 19537793 (-)
G112287 NA non-coding downstream 532937 19514799 ~ 19515004 (-)
G112410 NA non-coding upstream 25083 20078891 ~ 20079411 (-)
G112496 NA non-coding upstream 660275 20714083 ~ 20756786 (-)
G112557 NA non-coding upstream 943458 20997266 ~ 20997529 (-)
G112562 NA non-coding upstream 961565 21015373 ~ 21016048 (-)
G112563 NA non-coding upstream 963393 21017201 ~ 21017740 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other downstream 412016 19633093 ~ 19635925 (-)
AMCG00006773 tmem243b,tmem243 other downstream 416046 19623155 ~ 19631895 (-)
AMCG00006754 NA other downstream 1681379 18339270 ~ 18366562 (-)
G112059 NA other downstream 2414496 17632891 ~ 17633445 (-)
AMCG00006719 NA other downstream 4151072 15881130 ~ 15896869 (-)
G112420 NA other upstream 182048 20235856 ~ 20236206 (-)
AMCG00006807 NA other upstream 593512 20647320 ~ 20653659 (-)
AMCG00006813 NA other upstream 800249 20854057 ~ 20964562 (-)
AMCG00006841 NA other upstream 2076687 22130495 ~ 22197664 (-)
AMCG00006854 NA other upstream 2899368 22953176 ~ 22958306 (-)

Expression


Co-expression Network