AMCG00006796 (rabl2b,rabl2a,LOC107662875,LOC107600941)


Basic Information

Item Value
gene id AMCG00006796
gene name rabl2b,rabl2a,LOC107662875,LOC107600941
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20574797 ~ 20578476 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006796
ATGGCCAGGGACCTGGGGAGTCCCTCTGACCTGGATCAGGAGAAATACGACGCAGACGAGCAGGTGAAGATCATTTGTTTGGGAGACAGCGCCGTGGGGAAATCAAACCGGCCTCAGCAACTGTCGACATATGCACTGACACTTTATAAATACACCACGACGATTGATGGGAAAACGATATTAGTGGacTTTTGGGATACAGCAGGACAGGAGCGGTTTCAGAGCATGCATCCCTCCTATTACCATAAAGCCCATGCCTGTGTCATGGTATTTGATGTTCAGAGAAAGATTACCTACAAAAATCTTGCCAATTGGTATAAAGAATTGAGAGAGTATCGTCCAGAGATCCCCTGTATAGTAGTTGCGAACAAAATAGATGCCGATATGAAGGTGACCCAGAGAAACTTCAGTTTTGCTAAGAAGCAAGGACTTCCACTGTATTATGTGTCTGCTGCTGATGGGACTAACGTGGTGAAGTTGTTCAAAGATGCAATTAAACTGGCGCTGTCTTACAAACAAAACTCAAGTGATTTTATGGATGAAGTCATGCGAGAACTTGAgAATTTTGAACTGGAAAGAAAAGAGGACTCTTCGGATAAAGATGATGACAATTCAAAGGAGGAGAAATCCAAGTCGGCGTGA

Function

symbol description
rabl2a Predicted to enable GTPase activity. Predicted to be involved in intracellular protein transport. Predicted to be active in endomembrane system.
rabl2b Predicted to enable GTPase activity. Involved in cilium assembly and intraciliary transport. Located in cytoplasm and microtubule organizing center.

NR:

description
PREDICTED: rab-like protein 2B isoform X1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07931 RABL2; Rab-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006796 True 642 mRNA 0.44 7 20574797 20578476

Neighbor

gene id symbol gene type direction distance location
AMCG00006795 LOC102794702 coding downstream 520989 20047941 ~ 20053808 (-)
AMCG00006789 NA coding downstream 575296 19986747 ~ 19999501 (-)
AMCG00006788 NA coding downstream 590360 19982166 ~ 19984437 (-)
AMCG00006790 cpt1b,LOC100329197,LOC106573415 coding downstream 593362 19971627 ~ 19981435 (-)
AMCG00006785 prpf18 coding downstream 627100 19941057 ~ 19947697 (-)
AMCG00006799 odf3b coding upstream 33894 20612370 ~ 20617950 (-)
AMCG00006800 NA coding upstream 49056 20627532 ~ 20637604 (-)
AMCG00006805 zgc:77650,arf5,LOC107559620,LOC107599973,LOC105888566,LOC107599983,LOC105912562 coding upstream 77777 20656253 ~ 20666945 (-)
AMCG00006806 dennd6b coding upstream 110916 20689392 ~ 20707958 (-)
AMCG00006808 NA coding upstream 189286 20767762 ~ 20844220 (-)
G112410 NA non-coding downstream 495386 20078891 ~ 20079411 (-)
G112292 NA non-coding downstream 1005125 19568517 ~ 19569672 (-)
G112290 grm3,LOC107090533,LOC106924857 non-coding downstream 1008782 19564956 ~ 19566015 (-)
G112289 grm3,LOC108263977,LOC108444204 non-coding downstream 1032829 19541103 ~ 19541968 (-)
G112288 LOC108263977,LOC105018424 non-coding downstream 1037004 19537205 ~ 19537793 (-)
G112496 NA non-coding upstream 135607 20714083 ~ 20756786 (-)
G112557 NA non-coding upstream 418790 20997266 ~ 20997529 (-)
G112562 NA non-coding upstream 436897 21015373 ~ 21016048 (-)
G112563 NA non-coding upstream 438725 21017201 ~ 21017740 (-)
G112568 NA non-coding upstream 446230 21024706 ~ 21031872 (-)
G112420 NA other downstream 338591 20235856 ~ 20236206 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other downstream 938872 19633093 ~ 19635925 (-)
AMCG00006773 tmem243b,tmem243 other downstream 942902 19623155 ~ 19631895 (-)
AMCG00006754 NA other downstream 2208235 18339270 ~ 18366562 (-)
G112059 NA other downstream 2941352 17632891 ~ 17633445 (-)
AMCG00006807 NA other upstream 68844 20647320 ~ 20653659 (-)
AMCG00006813 NA other upstream 275581 20854057 ~ 20964562 (-)
AMCG00006841 NA other upstream 1552019 22130495 ~ 22197664 (-)
AMCG00006854 NA other upstream 2374700 22953176 ~ 22958306 (-)
G113050 NA other upstream 2825699 23404175 ~ 23407207 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G156955 rabl2b,rabl2,rabl2a,LOC107662875,LOC107600941 non-coding NC_035914.1 CM008317.1 7875052 ~ 7880946 (-)