AMCG00006797 (LOC104957567)


Basic Information

Item Value
gene id AMCG00006797
gene name LOC104957567
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20620742 ~ 20628623 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006797
CGTGATTCTCGAACTGACTGCTCGCTTGAATAACTAATCTGAGTTCTGCGCTACCGCACCTTCCCTGTCTCGGCACTCATTGGCTctaaaaaatgacaaatcactgaaaacatttcctCTATCCATGACAGCAATATAAAACGACGTGACCAGTTACATTTGGAGATTATGATCATTTAACTCGTTGGATCAAAAGCCAGTGATTCTGAAGCATTGTGATGTCAGCTGCCAGGGGACGGGTGAACTTTGCAGAGCTGATCAAGAAGAAGAGGGATGGAGGCCAGCTGAGTGAGGAGGAGATCTGTATCTTTGTGAGAGCTGTCACAGACAAGACTATCAAGGACAGCCAGATAGGGGCAATGATGATGGCAATATGGCAGAAGGGCATGGTGCCTGCGGAGACGCTGACCCTGACACGGGCGATGATGCAGTCGGGGGAGGTGCTGCAGTGGCCGCAGGAGTGGAAAAGCCTGATCGTGGACAAGCATTCCACGGGGGGCGTGGGGGACAAGATCAGCCTCCCCCTGGCCCCAGCCCTGGCTGCCTGCGGTTGTAAGGTACCTATGATCAGTGGACGAGGCCTAGCCCACACAGGAGGAACTTTGGATAAGCTGGAGTCCCTGCCAGGTTTTAACGTTCATCAGACGTCACAACAGGTGGCAAAAATTATCGAGACAGTTGGCTGCTGTATTGTTGGGCAGACGGAAGAGCTGGTCCCAGCGGATAAGGTGTTGTATGCCTTAAGAGATGTTACTTCCACAGTTGACAGCGTACCCCTCATTACAGGGTCAATTATTTCAAAGAAAGCCGCCGAATCCCTGTCCACTCTGGTGATTGATGTGAAATATGGAAATGCTGCGTTCTGCAAGGATATGAACGCTGCAAGGGAACTGGCCCAGTCCTTGgTGACTGTGGGGAACAATCTGGGCGTGCGCACTGGAGCCGTGCTCAGCAGGATGGACAGTCCCATTGGTCGATGCATTGGGAACTCCCTGGAGGTGATCGAATCCATCGAGTGTTTGAAGGGCCAAGGGCCAGATGACCTGAAGGAGCTTGTCATTTGTCTGGGCGGGTATGTGCTGTGGATGTGTGGGAGGGCAGCAACGCTGGACTCTGGCAAGAAGGACATTGCAAAGACTCTGGAAAACGGAGAGGCCCTTCGGATATTCCAGGCCATGCTGGAGGCCCAGGGAGTCCAGCCTGAAATCGCCACTGCCTTGTGTGTTGGGAACCAAGATTACTTCCAGGTCTTCAGACGAGCTCAGAGCCAAATAGAGCTTAAGGCAGAGGCTGAAGgcaCGGTGGTGGAGATAAATGGCATGCGCTTGGCAGAAGTTTTGCATAAGTTAGGAGCCGGTCGTACACAGCCTGGAGAGCCAATTAATCACAGCATTGGAGCAGAGCTCCTGGTTACTTTGGGGCAACATGTGCAGAAAGGTGACCCCTGGATCAGGGTACACTACGAGACACCGGCTCTGGGAGAAGATATGAGGGCTTACCTGCAAGGTGCACTTATTGTAGGGAACCCAGCCCAAGTGAATGACTCCCCCCTCATCTCCGAATTCATTCTACCAAATTAAAACAGTGGCGTTCAGAAGTCTGAGTAAATAACTAATAACTCAGAGACTGGAATGGAGTTTACATCCTGAATTATTCTTaattttagttgtattttacTCAAACaatgttgtgctttttttagaaatgttatGCTTTTAAACAGAATATATCTTTATCTATATTACTATCTATCTGATTTTAACTCTACTCAACTTGAAACAGCTCTTATATAatgtatgattatatatatatatatatattatttaataatatgcTTTATGTGTTATCTACCTGATGGGAAGGTTAATTCCCTGCAGTGACTTGAACAagctgtgtttaaaatacagtatttgttaaatattaaagacTTGATATGGAGCAAAGTTCAGgattctttgtgtgtttgcattagCCATTCAACATCAGAAGCTTCTTTAATGTTGCCTACACACATTTCCAAGTGACATATTCGTGTTCTTTATATCTTACTCATTTAAAAGTAAGACTCCAATGGTGGTCCAAAACACAACTTGTctgtcaaatgtttaaatacagagtTTGGTTTGAACCCAGTTCAATCCCGTGGaatgtttacagttttctttcagGTAAATCAGTGTTTAGCTAATCCCAAAGAAAGGCTGCTTATGGTGATTTGCTACTCTAAATTACCCAGTAGTTGTatgagtgtggtgtgtgtgttagttcTGCCCTGTGTAGTTGTatgagtgtggtgtgtgtgttagttcTGCCCTGCGttggactggtgtcccatcccgggtgtaccctgccttgtgccctgtgcctATGGGTTTAGGCTCCAGCTCCGCATGACCCTTAACTGGATGAATTGGTTAATGCAAATGGATGGATGATAgaagtatatagtatatatatatatataatatactagGCATATTGACAAGTCCAATTCATTTTTCCTCCATTGCCTGATCATCCCCCAATTGCCATTGTCAAAATGAAGTTAAGGGAAGAAGCAATTAATCTGGCTCTATAGGTATgatgatttccttttttaaattattacatttgttacaCATCCTTATACAGGGCAACTTAAAACTGTTACAAAATATCATTAGTAGCTACCCATTTATAAATCTGAGTTTTAACTGGAGCAATGTAGTTATTTTACTTTGCTCAATTGTACAATAGAGTGTCCATCTAGGATTGAATCAATgaccctgtgctccagagttCAGAGCCCTTagcactactccacactgctgccaacATGTACAGttagatacataaatatttggacagtgccccaagaacaagcaggaactaaagacagctgcagtgcaggcctggcagagcatcagcAGGGaaacaagtattgaaactcacaatttaattca

Function

NR:

description
PREDICTED: thymidine phosphorylase-like, partial

GO:

id name namespace
GO:0006206 pyrimidine nucleobase metabolic process biological_process
GO:0006213 pyrimidine nucleoside metabolic process biological_process
GO:0016154 pyrimidine-nucleoside phosphorylase activity molecular_function
GO:0004645 1,4-alpha-oligoglucan phosphorylase activity molecular_function

KEGG:

id description
K00758 deoA, TYMP; thymidine phosphorylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006797 True 2942 mRNA 0.45 11 20620742 20628623

Neighbor

gene id symbol gene type direction distance location
AMCG00006793 NA coding upstream 57866 20544477 ~ 20562876 (+)
AMCG00006794 NA coding upstream 85391 20531355 ~ 20535351 (+)
AMCG00006792 shank3a,LOC107710388 coding upstream 265378 20344401 ~ 20355364 (+)
AMCG00006791 NA coding upstream 357943 20262300 ~ 20262799 (+)
AMCG00006787 NA coding upstream 573718 20015945 ~ 20047024 (+)
AMCG00006798 lamtor4,si:dkey-159a18.7,LOC107557308,LOC107590499,LOC107694163 coding downstream 16606 20645229 ~ 20647241 (+)
AMCG00006801 NA coding downstream 38725 20667348 ~ 20674351 (+)
AMCG00006804 NA coding downstream 47243 20675866 ~ 20692613 (+)
AMCG00006803 NA coding downstream 93180 20721803 ~ 20751442 (+)
AMCG00006802 NA coding downstream 131804 20760427 ~ 20767061 (+)
G112438 NA non-coding upstream 49315 20565526 ~ 20571427 (+)
G112436 NA non-coding upstream 56954 20563498 ~ 20563788 (+)
G112435 NA non-coding upstream 57467 20563057 ~ 20563275 (+)
G112430 NA non-coding upstream 82522 20537943 ~ 20538220 (+)
G112424 NA non-coding upstream 344510 20275993 ~ 20276232 (+)
G112465 NA non-coding downstream 10073 20638696 ~ 20638986 (+)
G112470 NA non-coding downstream 18755 20647378 ~ 20725442 (+)
G112510 NA non-coding downstream 138913 20767536 ~ 20773066 (+)
G112535 NA non-coding downstream 290904 20919527 ~ 20923505 (+)
G112541 NA non-coding downstream 301611 20930234 ~ 20934218 (+)
AMCG00006672 NA other upstream 6681267 13933666 ~ 13939475 (+)
G111197 NA other upstream 7577294 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 7968927 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 8297464 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 11052466 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 308874 20937497 ~ 20944977 (+)
G112567 NA other downstream 419713 21048336 ~ 21049038 (+)
G112600 NA other downstream 514242 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 636630 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 989009 21617632 ~ 21622508 (+)

Expression


Co-expression Network