AMCG00006798 (lamtor4,si:dkey-159a18.7,LOC107557308,LOC107590499,LOC107694163)


Basic Information

Item Value
gene id AMCG00006798
gene name lamtor4,si:dkey-159a18.7,LOC107557308,LOC107590499,LOC107694163
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20645229 ~ 20647241 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006798
GTGAACATGTCCTCCGTCGCGCCTGTCAGGTGACCGTGGCGATCACATGATCACAAGGAAACGGGAGTCGAGCTGAGCAGCGTTTGGTTTTATTCGCGATTGTCTTATCTAGACATGACCACCGCTCTGACTCAGGGGCTGGAGAGGATCCCCGACCAGACGGGCTACCTGGTCATCAGTGAGGACGGGGTCCTGGCTtctGCAGGAGACCTGGAGAATGACGAGCAGGCAGCCGGGGCGATCATGCAGATGGTGCAGACGGCCTGCAAGTTCAAGCTCCACGGCAGCACTGAGCCCCCGTTCAAACGCATGTCAGTGGTGTTTGAAGATCACGTGTTCATGGTGACCGTGTCCGGGCAGAAGGTCTTTGTGGTGAAGCGGCAGAACAACCAGCGACAGCCAATCAACGTCTAGGGTTGGGGTGGGAGATAAGGCTCTCCCGATTTGTCGGTTCTCACAGGAGGGGTGGCAGGAGCCAATACGAATCTTGTTGAGTGGGACTGCGACTCatttggacatttattttaagggaAGAAATGTCATGACATTGGGGGTTAGGGGTTAGACATCACTCCTCCACGGAAGCATCTTCCAggatcttctgtttttcttccactttGCTGGACTTAAATGCTATTAAGGATTTAATGGAGTCAGGGCACAGAACCTGCAGAGCtcactgtgttaaaaaaaatatatacaacaatAAAGAGCCAGTTGGTGGAAAGAAAGCGATAAACCTACAAATCCTTGTGGCCCTGAGACACCCTGCCGGATTCAAACCAGTTGATTGTGCTGGTTTTGTTTATCTTGTGTCTCGATgcctattaatacatttaatatttgtgtaaCTTCATACTAAAATCGTAATCTAAAATAGGTCGGCACAAAAAGAATGGTCAGAACCAGGCAAGCTGCTGCAAGGAGCTCTTTGTGTTTCAATAAGTGAAACATTGTGtctatatgtgtattttgtgtaagCCTTCAGCACGGTCTATATGTTCTGGCTGCCCACTGCTGTGGTGACAATTGGTTGTCCAAAAtcggaaaataaataagaaagatCTAAATGACTAAGGAACTCATTGGTGTTTGAAAactcaataaaatattatattgtacattaatgGGTTGTGTCTTGGTTATAATTATTTAAGTGTAG

Function

symbol description
lamtor4 Predicted to contribute to guanyl-nucleotide exchange factor activity and molecular adaptor activity. Predicted to be involved in several processes, including cellular response to amino acid stimulus; positive regulation of TOR signaling; and protein localization to lysosome. Predicted to be part of Ragulator complex. Predicted to be active in lysosome. Orthologous to human LAMTOR4 (late endosomal/lysosomal adaptor, MAPK and MTOR activator 4).

NR:

description
PREDICTED: ragulator complex protein LAMTOR4

GO:

id name namespace
GO:0061462 protein localization to lysosome biological_process
GO:0071230 cellular response to amino acid stimulus biological_process
GO:0008361 regulation of cell size biological_process
GO:0032008 positive regulation of TOR signaling biological_process
GO:0005764 lysosome cellular_component
GO:0071986 Ragulator complex cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
K20399 LAMTOR4; ragulator complex protein LAMTOR4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006798 True 1162 mRNA 0.46 4 20645229 20647241

Neighbor

gene id symbol gene type direction distance location
AMCG00006797 LOC104957567 coding upstream 16606 20620742 ~ 20628623 (+)
AMCG00006793 NA coding upstream 82353 20544477 ~ 20562876 (+)
AMCG00006794 NA coding upstream 109878 20531355 ~ 20535351 (+)
AMCG00006792 shank3a,LOC107710388 coding upstream 289865 20344401 ~ 20355364 (+)
AMCG00006791 NA coding upstream 382430 20262300 ~ 20262799 (+)
AMCG00006801 NA coding downstream 20107 20667348 ~ 20674351 (+)
AMCG00006804 NA coding downstream 28625 20675866 ~ 20692613 (+)
AMCG00006803 NA coding downstream 74562 20721803 ~ 20751442 (+)
AMCG00006802 NA coding downstream 113186 20760427 ~ 20767061 (+)
AMCG00006809 miox,LOC102303880 coding downstream 261473 20908714 ~ 20918410 (+)
G112465 NA non-coding upstream 6243 20638696 ~ 20638986 (+)
G112438 NA non-coding upstream 73802 20565526 ~ 20571427 (+)
G112436 NA non-coding upstream 81441 20563498 ~ 20563788 (+)
G112435 NA non-coding upstream 81954 20563057 ~ 20563275 (+)
G112430 NA non-coding upstream 107009 20537943 ~ 20538220 (+)
G112470 NA non-coding downstream 137 20647378 ~ 20725442 (+)
G112510 NA non-coding downstream 120295 20767536 ~ 20773066 (+)
G112535 NA non-coding downstream 272286 20919527 ~ 20923505 (+)
G112541 NA non-coding downstream 282993 20930234 ~ 20934218 (+)
G112564 NA non-coding downstream 375692 21022933 ~ 21023279 (+)
AMCG00006672 NA other upstream 6705754 13933666 ~ 13939475 (+)
G111197 NA other upstream 7601781 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 7993414 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 8321951 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 11076953 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 290256 20937497 ~ 20944977 (+)
G112567 NA other downstream 401095 21048336 ~ 21049038 (+)
G112600 NA other downstream 495624 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 618012 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 970391 21617632 ~ 21622508 (+)

Expression


Co-expression Network