AMCG00006799 (odf3b)


Basic Information

Item Value
gene id AMCG00006799
gene name odf3b
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20612370 ~ 20617950 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006799
GTATCTCCCATCTCACAGCTGAGCACTTTTTAGTGCTTCAACGGAGGGAAAAACAGATTTATGTGCTGCGTCTACTTCACCTGTTTTCTGCtttggaaaacaagaacaacttaaatacagACCAAAATGTCAACTGATGTATGGGTAGGCCCTTGGAGACCTCACAGACCAAGAGGACCCATTGCAGCTCTGTATAGCAGCCCTGGTCCAAAATATGCCCTTCCAGGAGTTACAGgAACTGTCTATCACGATCCCAGAAAATTCAAGGCCCCTGCCTTCAGCTTTGGATCCCGTCACTGGCAGTATTCGAAGGACTGTTCTCCCGGTCCTGGATACCTCGTCCCAGCGAACATCACAAGGATTGGGAAGGATGGCACACCTGCGTATTCAGTCTACGGCCGTCCGAAAGACCCAGTCCTCTTCCAGACTCCAGGGCCAGgCCGTTACTCGCCAGAAAGGTCAGGAAAATCGGCACATTATTCAGCCCCTGCATATTCCTTGTCTGCACGGACCAAAGGATTTCGTAATGATCAAACACCAgTGCTGGGCCCTCACACGGTGAACAAAACCTCTGCTCCAAACTTCTCCCTAACGGGCAGGAGCAAGATTGGCAGCTTCCACGAGGATCTTCAGAAGACTCCAGGCCCTGGGACATATAGAGTGATAGACCCCTGTACCTATAAGTACAAACCTCCTCAATACAGCATCACTGGACGCAATGGCATGCCAGGAGACACCACACAGAAACCAGGGCCGGGAGCTCACAGCCCTGAACGGGTGACCTTCACCAAATACCAGTCCCCCAGATTCTCGTTTGGAGTCCGACACTCAGAATACGTGGCTCCTCTCATCGTGGATGTGGCAGAGTAAGGGCCACAGCCGTCCCCCGAGCCCAGATGAGCACAAGGATCTTCTGGAGTTCAAGACCTCACAATCGATTGCAAATAGCAAGGCCACCTGAATCAATGTGCACATCTTTCTGAAATATCACTTGTTTAATcttcaaagtttattttgtgtgtgtggttgatGTTATTATGTGTACTGGTAAAAAGATATCGAGTATGTATCCAGAACAGTGAATTCATAATGTTTATGCCCATATATCCAAAAGTCAGTATTACAGCATTTTCAGGTGGAGCCTGTTACCAGGAGAAGGCAGTAATCCAGGACTCACttcacagtgtgtcagtgaaagCAAGAACGATTAAAACCCCATGGCTGTCTCAGGAGAATAAGAGGCAAATAACATATACTCTGTTGTCCTGCCCCATAGGTGACATTTGATTACCTCCCACCACCACCgctacacacacaagcacatctTTAAGTAGGAGGCATGGGTTATTATTTTGACTGGAACCTACTCAGAGTTTCAGGGTCTATAAGAATGGACGATTCCCTTaatcatgttttgtattttacatctTCCCTTTTACTGAAAATTGGGACCATGGTGCTGGGGTTGTACTTTGTGGAGGGGAATCGGCTAAAACGGCTGCAGCTGATTTCTCAGTCATTCACTGAACATAATGGCACAACAAAACCTACACAGTCCAGACAAGGTCTTTTCATGACAATTGCAATAATGTTGCCAAACTGATTCAACCTTTTTCATGCTTCACAACCTTCCTGCATTGATCGAATGACACAGAACATGTACTTAAACTCTTGGGGTTATATCTATACTTCATATCATATTTGAAGCAAATACTTCCACGTTTTCTCAACAAACAGGTCCATCtaattaacaaattatacaaataataaaaagttaagAGTTTAGAGTTCTATAGAAGTACTATGTAAATTGAAGACAAATATGGACTGCTTTCTACGcactaaaatgtataattggcTTGCATGTGACATCACCATtagtatgtgtatatttatttatatggagaaataaaatatatttcttatatacttatataaaatagatttttcttgAGCAGGTGAGACCTGACTAATGCAATAGTCCATTTTATGTTTCCGTGGAAGTTCTGATTCCTGAATCTGCCTTTTAACCAATATTGCTATGATGATAcactttgattaaaataaacacatgaatcaGA

Function

symbol description
odf3b Predicted to be located in cytoplasm. Predicted to be active in cytoskeleton. Is expressed in peripheral olfactory organ; pronephros; and testis. Orthologous to human ODF3 (outer dense fiber of sperm tails 3) and ODF3B (outer dense fiber of sperm tails 3B).

NR:

description
PREDICTED: outer dense fiber protein 3B

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006799 True 2081 mRNA 0.43 7 20612370 20617950

Neighbor

gene id symbol gene type direction distance location
AMCG00006796 rabl2b,rabl2a,LOC107662875,LOC107600941 coding downstream 33894 20574797 ~ 20578476 (-)
AMCG00006795 LOC102794702 coding downstream 558562 20047941 ~ 20053808 (-)
AMCG00006789 NA coding downstream 612869 19986747 ~ 19999501 (-)
AMCG00006788 NA coding downstream 627933 19982166 ~ 19984437 (-)
AMCG00006790 cpt1b,LOC100329197,LOC106573415 coding downstream 630935 19971627 ~ 19981435 (-)
AMCG00006800 NA coding upstream 9582 20627532 ~ 20637604 (-)
AMCG00006805 zgc:77650,arf5,LOC107559620,LOC107599973,LOC105888566,LOC107599983,LOC105912562 coding upstream 38303 20656253 ~ 20666945 (-)
AMCG00006806 dennd6b coding upstream 71442 20689392 ~ 20707958 (-)
AMCG00006808 NA coding upstream 149812 20767762 ~ 20844220 (-)
AMCG00006810 NA coding upstream 301584 20919534 ~ 20934215 (-)
G112410 NA non-coding downstream 532959 20078891 ~ 20079411 (-)
G112292 NA non-coding downstream 1042698 19568517 ~ 19569672 (-)
G112290 grm3,LOC107090533,LOC106924857 non-coding downstream 1046355 19564956 ~ 19566015 (-)
G112289 grm3,LOC108263977,LOC108444204 non-coding downstream 1070402 19541103 ~ 19541968 (-)
G112288 LOC108263977,LOC105018424 non-coding downstream 1074577 19537205 ~ 19537793 (-)
G112496 NA non-coding upstream 96133 20714083 ~ 20756786 (-)
G112557 NA non-coding upstream 379316 20997266 ~ 20997529 (-)
G112562 NA non-coding upstream 397423 21015373 ~ 21016048 (-)
G112563 NA non-coding upstream 399251 21017201 ~ 21017740 (-)
G112568 NA non-coding upstream 406756 21024706 ~ 21031872 (-)
G112420 NA other downstream 376164 20235856 ~ 20236206 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other downstream 976445 19633093 ~ 19635925 (-)
AMCG00006773 tmem243b,tmem243 other downstream 980475 19623155 ~ 19631895 (-)
AMCG00006754 NA other downstream 2245808 18339270 ~ 18366562 (-)
G112059 NA other downstream 2978925 17632891 ~ 17633445 (-)
AMCG00006807 NA other upstream 29370 20647320 ~ 20653659 (-)
AMCG00006813 NA other upstream 236107 20854057 ~ 20964562 (-)
AMCG00006841 NA other upstream 1512545 22130495 ~ 22197664 (-)
AMCG00006854 NA other upstream 2335226 22953176 ~ 22958306 (-)
G113050 NA other upstream 2786225 23404175 ~ 23407207 (-)

Expression


Co-expression Network