AMCG00006800


Basic Information

Item Value
gene id AMCG00006800
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20627532 ~ 20637604 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006800
TCCCTCCCTGTCCTCCCCTCTCTACCCCAGAATGACCCTGCGAGTCCCTGTGCCCCGGCCCTCCTATTCCCAGGCCCGCGAGAACCTCATCAAGGCCGTGCCCCCAAATCTCATCTGTGCCCTCACCTGCGGGGGAAGAGACTGTCGCTATGAAGGACCAGCCAACTGGAGGCCGAGTCAGCAGATCATACGAGGGCTCTTCTCCACATGGGTGACAAATGATATTCTTGCCATGACCAGACCCTCTACAGTTCTCATAAAGAAGTATGGCATTATAGAGCAATTCCATCAACTGAACATCAAATCCATCATCAATGTGCAAGTGCCAGGTGAACATGCCCACTGTGGACCCCCATTGGAACAGGAAAGTGGCTTCTCTTACTTACCTGAGGTCTTCATGGAAAATGGAATCTATTTCTTTAACTTTGGCATGCCAGATTTTGGAGTTTCATCTCTGGTTCGAATGTTGGATGAGGTTAAAGTGTTGGCATTTGCTGTGAAAGAGGGAAAAGTTGCTGTGCATTGCCATGCAGGACTGGGAAGAACAGGTGTCCTCATTGCTTGCTACCTGGTTTACCTCACTCGTGTGAGCCCGAGTGAAGCCATTCATTACATCCGGATAAAACGGCCTTACTCCATACAGACGAGGGCACAGATAAATCTGGTCTTTGACTTTGCCCGATTCCTCACTCCTCAGCTCATCTTGTATACGGATGTCAGCTCAGGGCACAGCCGTTTCACCCTGCAGCAGTACCTTCACCGGCAGAAAAACCTCCTCCACGGTTATGAAGCACGGAACTTGAAGTACATCCCCAAAATTGTGGACCTAGTCTGTAAGAGACTGGTGTCAATGACTTTAAACAAAGCTGAGTGTACCAGCCTTCAAGCTGAGGTGGAAAGGGAGGCTGCAGTTGTTGACTTAACCGAGCAAATTAGAGAAACACTCATCAAACAGACTTTTCTGCCCCACCATGTCTCGCCCATTCTGAGAGACCTAAATAACACGATGAACTCACCCATCCGGTCCGTCACCTCctgggaggagaaggaggggttTCAGGAGCGAAAGAGAGAAGTTCTTCAGAACAAGAGAAGCTATAAGTTTGTGAGGCTCCCCCCACCAGCCTGGAATTGTTCATCCTCTTCAAAGCTGCAGTGTGAACAAGCCAATCAAGAAGCTGCAGCCCCCAGAACAGAGCCCCTCCAAAAGGACGTGCATTGTCTGCAACATCAGACCAGGAGTGAATGCTACAACAATTTACATGCAAATGCTGTAGGCTCTCAATCAGAGGCACCCAAAGATCTCAGCAATGGCTCTGAAAATGCAACAAAGATGAAGCGcgggaacaaaaaaacaccagccTTCAACAGGTTGAGTACAACTGTAGAGAACCAGCTAGGGCTGGTTTTGGTGTCGCAGGCTGTGGCCAAGGCGATGGCAGAACAGGAACCTGCAGGGCACGAATTTGTGAAGAGAATAGCACACCTACAGAATGAACTGAATGAAAATGAGGGCCCTTGGGCAATACTGGCCTCAGAGTCAGACCCCAGAGTCATCAGTTCCATGCTGTGGAGCTGGCTGGAACAACTGAAGGAGCCAGTGTTGAAATCTGATGACCTACAATTGTTGGTTGCTGCCACACAAGATGCAAAGAGTCTCAGTGCACTACACAAGTGTCAAGACATGACCATTTCCTGCATCCTTGACTGTGTTAGTGCGGTAACCAGCTTGAGCCCCCAGCTGGAAGATGCTGTTCTTGGTCGACTCATCCAAGCACTGACCAGATGTGCAGTGGAGGAAATGCCAAAGTACTCAAGACAGATGCAGATCTTCAAGGCTGTTGTTAAGGAAAAGCGTGCTCACAACCTCTATATGAGGGCACTGGAAAatacaggaaatGGAATTAACCTTCCCATCAGG

Function

GO: NA

KEGG:

id description
K18078 PTPDC1; protein tyrosine phosphatase domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006800 True 1921 mRNA 0.49 12 20627532 20637604

Neighbor

gene id symbol gene type direction distance location
AMCG00006799 odf3b coding downstream 9582 20612370 ~ 20617950 (-)
AMCG00006796 rabl2b,rabl2a,LOC107662875,LOC107600941 coding downstream 49056 20574797 ~ 20578476 (-)
AMCG00006795 LOC102794702 coding downstream 573724 20047941 ~ 20053808 (-)
AMCG00006789 NA coding downstream 628031 19986747 ~ 19999501 (-)
AMCG00006788 NA coding downstream 643095 19982166 ~ 19984437 (-)
AMCG00006805 zgc:77650,arf5,LOC107559620,LOC107599973,LOC105888566,LOC107599983,LOC105912562 coding upstream 18649 20656253 ~ 20666945 (-)
AMCG00006806 dennd6b coding upstream 51788 20689392 ~ 20707958 (-)
AMCG00006808 NA coding upstream 130158 20767762 ~ 20844220 (-)
AMCG00006810 NA coding upstream 281930 20919534 ~ 20934215 (-)
AMCG00006814 st8sia1 coding upstream 394794 21032398 ~ 21048481 (-)
G112410 NA non-coding downstream 548121 20078891 ~ 20079411 (-)
G112292 NA non-coding downstream 1057860 19568517 ~ 19569672 (-)
G112290 grm3,LOC107090533,LOC106924857 non-coding downstream 1061517 19564956 ~ 19566015 (-)
G112289 grm3,LOC108263977,LOC108444204 non-coding downstream 1085564 19541103 ~ 19541968 (-)
G112288 LOC108263977,LOC105018424 non-coding downstream 1089739 19537205 ~ 19537793 (-)
G112496 NA non-coding upstream 76479 20714083 ~ 20756786 (-)
G112557 NA non-coding upstream 359662 20997266 ~ 20997529 (-)
G112562 NA non-coding upstream 377769 21015373 ~ 21016048 (-)
G112563 NA non-coding upstream 379597 21017201 ~ 21017740 (-)
G112568 NA non-coding upstream 387102 21024706 ~ 21031872 (-)
G112420 NA other downstream 391326 20235856 ~ 20236206 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other downstream 991607 19633093 ~ 19635925 (-)
AMCG00006773 tmem243b,tmem243 other downstream 995637 19623155 ~ 19631895 (-)
AMCG00006754 NA other downstream 2260970 18339270 ~ 18366562 (-)
G112059 NA other downstream 2994087 17632891 ~ 17633445 (-)
AMCG00006807 NA other upstream 9716 20647320 ~ 20653659 (-)
AMCG00006813 NA other upstream 216453 20854057 ~ 20964562 (-)
AMCG00006841 NA other upstream 1492891 22130495 ~ 22197664 (-)
AMCG00006854 NA other upstream 2315572 22953176 ~ 22958306 (-)
G113050 NA other upstream 2766571 23404175 ~ 23407207 (-)

Expression


Co-expression Network