AMCG00006803


Basic Information

Item Value
gene id AMCG00006803
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20721803 ~ 20751442 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006803
AGGTTGAGGACAATATCTCAGTTGAAGTGGATCGAAGGAGAAGTTCCATGCTGGTTAATGAAAGGATTTGTAACATTCTGTGCACTCTGCAATCTACAAGACAAATGTTTGTCTGCCTGTGGAAGAGGTTTAATTAAGGATACACACATTTTATCAAcagATCTGTGTGCCCGGTCACCATGTTCTGGAAGTTCGACCTGCACACCACCTCCCACATCGACAAGCTGCTCGACAAGGAGGATGTGACCCTGCGCGAGCTGATGGACGAGGATGACATCCTGCAGGAGTGTAAAGCCCAGAACCGCCGGCTGCTGCTCTTCCTCAGCCAGGACCACTGCATGGAGGAGCTGGTCTCGCTGATCACCCAGGAGCCGCCACAGGACATGGACGAGAAGATCCGCTTCAAGTATCCGAACATTGCCTGTGAGCTGCTGACATCAGATGTGAACCATATCAATGATAAGCTTGGAGGCGAcgagtctttgcttgaaatacTGTATGGCTTTCTGGAACAGGATCCCCCCCTCAATCCTCTCCTGGCCAGCTTCTTCAGTAAAACTATTGGCAACCTCATTGCTAGAAAAACAGAGCAGGTTATCTCTTTCTTAAGGCAGAAAGATGGGTTCATCAGCTTAGTCCTGAAACACATAGATACTTCAGCCATGATGGACCTCCTGCTGCGACTCATCAGCTGTGTGGAGCCCGCGCCTCTGAGGCAGGAGGTCTTGAATtggCTTAATAAGGAGAGACTGATTCAGAGACTCATAGAGCTTATTCAAATAGGAAAAGACGAAGAGAAACAATCGAATTCTTCTCAAACACTCTGTGATATAATTAGACTGAGCAGGGACCAGGCAACTCAGCTGCAGGACACCACAGAGCCTGACCCCCTACTCACTGTGCTCGAGTCGCAGGAAAGTGTTGAAGAGCTGTTGAAGAATATGTTTGAAAGAGATAAGAGTGAAAGCTGCATAGTCAATGGAACTCAAGTGCTACTTACATTATTAGAAACCAGGAGGCCTGGGGTTGAAGGGCTGATGGATTTGTGTACTCAGGGATATGAAAGGTCTTACACTGTCAATAGCAGCATATTACATGGTATTGAGCCTCATCTAAAGGATTTTCAGCAGCTTCTTCTTGAACCTCCTAAGAAATGTGCAATATTGACCACAATCGGAGTGCTTGAAGAGCCACTGGGCAATTCCCGCCTTCACGTAGCCAGACTGATCGCCTCCTTGCTGCAAACAAGCATGCCCAGCATAAACCAGGAGCTTTGTAGGCTAAATACCATGGACCTTCTACTTgatttattttttaaatacacctgGAATAACTTTTTGCACTTCCAAGTGGAGCTGTGTGTAGCAGCGATTCTGAACCACTCGGCCCAGGAAGAGAAAGTTGCAGTGACTCCCGGGAATAAAGAGGAGCCCAGCGTCAGTGCCAGCGCAGACAACCCCGACAGCTCCTCTCACAACATCCTGGTGGCTCATCTTTTCCAGAAGTGCTGTTTGGTGCAGAGGATACTGGATGCCTGGGAAGataatgacaaaatacaGGCAGAAGGTGGGATGAGAAGAGGCAATATGGGGCACCTTACTAGAATAGCCAATACTGTGGTACAGAACATGGAGAAAGGGCCGGTCCAGGCACAGATTAGTGACCTCATCAAAGAGCTGCCCGAGGATTGCCGAGGTCGGTGGGAGAGTTTTGTGGAGGAGACCCTGACGGAGACTAACAGGAGAAACACTGTAGATCTGGTGAGCACGCACAACCTGCACTCTTCCAGTGAGGACGACGACATCGAGAGCCCCTTCCCCAATGAGCTGTCGCTTCAGCAGGCATTCTCAGACTATCAGATTCAGCAGATGACGGCCAACTTCGTTGACCAGTTTGGATTTAATGATGAGGAATTTGCTGAACATGATGATAATATTAAtGCCACCTTTGATAGGATTGCAGAAATAAACTTCAATTTAGATGCTGATGATGAAAGCAGCAACGCAGCTGTGTTTGAGGCATGCTGTAAAGAGAGAATACAGCAGTTTGATGACAATGAAGATGAAGAGGATATCTgggaagagaaagaaataaactaTGCAACGCAAGTCAAATCAAGAACAAGGTTTGGAGTGTCCCGCACGTCGGATAGCTCCTCAAAGAGCGATGTGGAGAACGGAGAGCAGGACAGAAGCATCGAGTCggacgaggaagaggaggaggtggagccAAAGGAGGCCACCATCACTGACacggaaaacaacaaaaacaaaaaacagtctGAAGGCAAAGAGAACGAATCAGCAGAAAGCCCTGGCTGGACAGCTAATTTTGAAGACATCAACTCAAAGTCCCCTGTCCCCTGCGTGGCTGTGGACGTGGGCTCCAGCGTGTGGGACTCTGCTGTCACCCCACATACCACCGCCACCACCGAGACTGAGGAGAAAGGATGGGCAAAATTCACCGATTTCCAGCCTTTCTGTTGCTCAGAGTCAGGCCCCAGATGTAGTTCTCCTGTCGACTCGGAGAGTAACGACTCTGAAGGACATCCCAAACAAAACCAGGATAAGAACTTCATGGGCTCCTCCCCCTGCGTGTGGAACGTGTGCGTGACCCGCAAGGCCCCTCTGGTGGCGTCCGACAGCAGCTCCTCGGGCGGCTCCGACAGCGAGGAGGACGAGGACAAGACGGACATAGTCACCGAGACCATCACCACGGGCGCCGGCCACGAAACCATCAAACTCACCATGGATGCCAAAAACGAGAAAGCCGTCTTCACAAGTGAAGCTGAACCCGTGCTAATAGACAAGCTCAGCATCACAGACGGGCCACAGAGGGGCTCCGAGACCCCCAACAGAACAGAGGCCCCCACAGATCCCCTCAGCTCAGCTAGCACAGAGACCACTGCAACAGACCTCACTGTGAAAGACAGGAAAGACGAGACAGTCCCACCGTCAGAGACGACGCTGAACGGGCCCGCTTGACGACATCAGAGCGAGGGCAGGTTGGAGAGCCACTCTGGGCCGCTTCCATTTTACTCCAAAAACCTCTTGATGCAAcctttgtgtttaaatgaataatgcTGCGATGTTATTGGACCCTACCAATCAGGACCAGAAAATGGGGggctaaaaaaaatacaccataaataaaaaaacaaacaaacaaacaaaaaaaaaaaacattcttacaGAAACTTATTTTTAGCTGATGTTGAAATtgtactgtttaaatgtagcaGTGAACATATGATTACTGTTTCAAAGGATTCAACGTTTTCTTCATTTCCTGGAAGATTTACTCTGGCTGTTTCCgtccatttctctctctgtctctcctttaAACAGTATTGGTTGTGTGTAACAGGGACACGGAACAGCTACGCGCCCCAACGAAGCGGCCCCGCAAATCTCATTCCTAACGAATCTGTCTGACTGCACTTGAACCACTTTTTAGAATAGCCAATCATTTTTCAGGGATGCCACATCTTAACGATCTTGCTTGATAGTCAGAAATCTCTTCCCGCACAGCGCATGTCTGTGATGTCTCCCTGTGTTGAGCTGCTGTTTGTGCAGATtcactatttgttttaaactgataaaaaaaaaatatatgtatttttgtatcagACCTATCTCGAATCCAAAGTCCACTCTTTTTGAAATTGAACATGTTTCTGTTGAGCATGAATATGACAAGAACGTTTTGAGCAGACGGTAATGTTTGTATGCTCTCAACAATGAGTAGGGCGACTCTTGCCTTGAAACTGGGACTCGGTCACTGTACAGTTGAACAGGGATAAGTGTTGTTTTCAGGTGGAGGTGTTAATCCTTCTCTTCGCAGAGTTTGCTTTTATATATTCAGGTAAAGCTATGTTTAATGAGGTAGTACACATAAATCACTAATCTTACAATTAGGGATGTCACAGCACCCAGATGGTGCTTGAAGAATTTGCAGcttctttttcccttttaatgtCACAAATCAAAGGTTCTTAATAGGTGGATGAGATCACAAAAAGCTCACTACATTTTAAGATGGTCTAATAAAGCCAGTAGGGAaatgaatgtgtaaaaataGCTTGGCCCTTTCACATTGGTGGTATAGTTATCCAGTTTGTAATGTTCCCCTTGCAGTGAAGCAATTCCTTATTATCTAGATTTCAAAGTATTTACacttatttatagttttttggGATATGCTAtcatattagttattttttaacttatacatatatgtcattaatttgtaattacCTTATTCATTtgtgggaaatgtttttttttcttaatcaaaATCCAAAAAAGAGACATTAAATGATACtcaaacagagaagaaaaatagaaaataaatgatggTCTGGTGTGCCTGAAAATATACAGGCTGTTAAGAGtttgaaaatttaaataaagacCCGCACATATTTCTACACTTGTTGACTGAACCTTAAGTACCTTAAcataccattatttattttattctcttaaaTCTGTGACATCCCTTCTAGAAGATTTTTGTTTAGTCTTCTAACTTCTAGCAAGTCAGAAtaaggaaacaacaacaacaacttgaTATTTTCTAAACTCATCTTACAGGAAAGAGGCAGAAAAAAGACTAACAAGATAAATGTTTCTTCACAAAACTGGGAAAGAAGAGAAGGCTTCTGTAGTTTAAcactcaaaatgttttttttttttttttatt

Function

GO: NA

KEGG:

id description
K15500 PPP6R2, SAPS2; serine/threonine-protein phosphatase 6 regulatory subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006803 True 4704 mRNA 0.45 23 20721803 20751442

Neighbor

gene id symbol gene type direction distance location
AMCG00006804 NA coding upstream 29190 20675866 ~ 20692613 (+)
AMCG00006801 NA coding upstream 47452 20667348 ~ 20674351 (+)
AMCG00006798 lamtor4,si:dkey-159a18.7,LOC107557308,LOC107590499,LOC107694163 coding upstream 74562 20645229 ~ 20647241 (+)
AMCG00006797 LOC104957567 coding upstream 93180 20620742 ~ 20628623 (+)
AMCG00006793 NA coding upstream 158927 20544477 ~ 20562876 (+)
AMCG00006802 NA coding downstream 8985 20760427 ~ 20767061 (+)
AMCG00006809 miox,LOC102303880 coding downstream 157272 20908714 ~ 20918410 (+)
AMCG00006815 NA coding downstream 336919 21088361 ~ 21102151 (+)
AMCG00006818 NA coding downstream 425106 21176548 ~ 21200739 (+)
AMCG00006822 NA coding downstream 592200 21343642 ~ 21354607 (+)
G112465 NA non-coding upstream 82817 20638696 ~ 20638986 (+)
G112438 NA non-coding upstream 150376 20565526 ~ 20571427 (+)
G112436 NA non-coding upstream 158015 20563498 ~ 20563788 (+)
G112435 NA non-coding upstream 158528 20563057 ~ 20563275 (+)
G112430 NA non-coding upstream 183583 20537943 ~ 20538220 (+)
G112510 NA non-coding downstream 16094 20767536 ~ 20773066 (+)
G112535 NA non-coding downstream 168085 20919527 ~ 20923505 (+)
G112541 NA non-coding downstream 178792 20930234 ~ 20934218 (+)
G112564 NA non-coding downstream 271491 21022933 ~ 21023279 (+)
G112566 NA non-coding downstream 272837 21024279 ~ 21031984 (+)
AMCG00006672 NA other upstream 6782328 13933666 ~ 13939475 (+)
G111197 NA other upstream 7678355 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 8069988 12620062 ~ 12651815 (+)
AMCG00006624 NA other upstream 8398525 12145745 ~ 12323278 (+)
AMCG00006565 LOC103366858,LOC103380581 other upstream 11153527 9563952 ~ 9568276 (+)
AMCG00006811 NA other downstream 186055 20937497 ~ 20944977 (+)
G112567 NA other downstream 296894 21048336 ~ 21049038 (+)
G112600 NA other downstream 391423 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 513811 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 866190 21617632 ~ 21622508 (+)

Expression


Co-expression Network