AMCG00006805 (zgc:77650,arf5,LOC107559620,LOC107599973,LOC105888566,LOC107599983,LOC105912562)


Basic Information

Item Value
gene id AMCG00006805
gene name zgc:77650,arf5,LOC107559620,LOC107599973,LOC105888566,LOC107599983,LOC105912562
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20656253 ~ 20666945 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006805
ctaaaatCAACGGACAGGTGCAAAACAAACAGCTCAGCGCCCATGACGTCTCCCCACCAGAGCGCCGCTTGTCAATAAAGTTGCGTGAAGGCGATGACGTCATTTCTTCCGCGTTGGCCTGTACGTGGCAGCTGCATCAGAGGAGCAGAGGCGGCGAgacgcagacacacagacactcccATCCTGAGCTGCtgctttcaaacacatttctggTTTAAAGATTAGATCGGTATCTGACTCGTCAAGGGGGACTCGCCGAGAATATGGGTCTTACGATCTCGTCGCTTTTCTCCAAGCTTTTTGGCAAGAAGCAGATGCGCATACTTATGGTTGGTTTGGATGCTGCAGGGAAAACCACTATTTTATACAAACTGAAGCTGGGAGAAATCGTTACTACCATTCCAACAATTGGTTTTAATGTTGAGACTGTGGAGTACAGGAACATCTGTTTCACAGTATGGGATGTAGGTGGTCAAGACAAAATTCGTCCCTTGTGGAGACATTACTTCCAGAACACACAGGGCCTCATCTTCGTAGTTGACAGCaacgacagagagagagtggcagAGTCTACAGAGGAGCTGCAGAAGATGTTGCAAGAGGATGAACTTCGGGATGCTGTTTTACTGGTGTTCGCCAACAAACAAGACTTGCCCAATGCCATGAGTGTAGGGGACCTGACAGAGAAGCTCGGCTTACAGAACCTCCGCAACAGAACCTGGTACGTCCAGGCCACCTGTGCCACACAAGGCACCGGTTTATACGACGGACTTGACTGGTTATCCAACGAATTGTCTAAGCGCTAAAGGAGCAAAAGGAGCAAGAACTGAGGCGAACAAGAGAGCAAGTGTGTGCAAGAACGAGAGATGAGAATTTTATAGAGAAACGTGTCTAAAttatcagtgtgtctgtctggtaGAACTTGAAGTTATGGACTTTGCAATCAGTTCCTGTTGTAaaatcttttttccccttcctgtTAGACCTTGTTACTCCCACGTGTTGCTTAGTCCTGGTTTTATTTTACCCAACCTGTCAACTGAAAACTCTTAAagttgcatgtttgtttttttaaagaaagagaaaataaattaacagtggTCTGGAGGAGTGCATAATGGATGGCACTGGATGACATTCAGCACTAAAGCCCTGTCTTGTACTCTAGAGACTGAGACGCATTTGTCACTAATCAGAAGTCAAATTTGACCTTTTCGACTCGATTGCCTCCTGGGATAGCCAAACTGACAACTCTTCTGAATATCAGTGGGTTGCAGAACTATCcagaaagctgtttttttacagaaaagtgCTTTGTAGGAAGCCAGATAGAAAGATGACCACCATTCTGAAGGAATTTCATGGGCCATTTATTTGCAATAATAGATGTATTTCCCTGTTGACATCTTTCTTGATATGGTCTATGAAAACACGATAAATCTTACACTAttaacacagtttttttttgtttttgtttttttaaacgtaCCCCTTTCTcgtatacataaaaaaaaaatatccgtCAATGACAGAACAGGATATTGCATTATTGCGTTTTGTACAGTGCTTTGATATTGCAGCTTTTGTGGTGCAAGAAGGAATCCAATACAGAGCTTGCAGGGCAGTGCTATGGATCCTATTGTCATTTCCCTGCTGTTCATTTCCGAAACTGTACCTTCCCAAGGTAGCCCGATCCACATCGTGCACGGATCAACCAGAGTGCGTTACATTGACTCGATCTgttgtacaaaaaataaaacaaactcgGTTACTgactttgtgtgtttaaaaaaaaaaaagacgaattggagatggatttttttgtttaatttcactttaccttgtgttttgtttttttaagtattttattttaatattttataaagtatttgaAGTTATTAAAAAGAGGGAAAATGGATTGTGAATGTTTGTCTTCTGTCCTGCTTGGTTTTAATTGCTGCTTTGGGGTAAATATCAGGAATAGTCTGAGGGGAATTCACCCGAGGTACAAAGCGACAACaaaaattaattgtatataatttccTATTAGGTGTGTTTGCTGTGTTATCAGTTATGGTACTTTCAATACTGTTAATTATCCTGCATTTCCAAATCCTTTTGTATTGTCCTGTTCTCACAGTGATGTTTCTGAGCCTTTGGACCCCCTGTCCTATTCTGTGTGTTGTATCAGCTCTGTGAACACTTTATATGATGAGCCCTCCTGAAAAATATGTTATggaaaatgttttctaaaatcCAAAAGACTGCTAATAAAACCAAATCAGGTCACTGTGATGCCAGTTTCATATGTTTTTCAGATCATTGCCACAGATGTTAAGACTTCAGCTCGCATAggtctttttaattatttattaattcagctAACCCTGCAGTATGCACTGGTGAACGTATGCTTGACAAGATGATGTATAATTATTCTGTTAACGGTATATGTGATGGCATCcgtttactgttgttttttttgtctttttgtattctACGggtcttttctgttttgcttttaagtAAAGTCATTTGTCACAATTAGGTTTTCtcctttattttcaaacatctcTGTGGGTGGGTGTAACCACAGCAAACGACTGCTAATGTCATCTTGTCTTAAATGATCAAAATGGAACGAGAACGCTGGCTGACTGAGATCTGCCAACTGAAGAAAAATGTCACCTATTTCTACATTGTGTAAACAGGCTTCAGTTCACCACATTTCTCAATCTCATTTCCTGTGGTGCCTCAGTCTATGCAGGGactttgttttgcatatttcgCTCTTGCAGCAGAGTCCTTCCTGTatctgttttgtaaatgtgctGCTTTCATAAAACGGCCCTATGCTGTTTCCAAGTGTGTGTCACATTAAACCAATATGTCAAATGGACTTTTTATATGTATAGGCCAATGCCTTGGGTTTGAGGTGCATTTAGGGAGATGCTAACAATACACTTGCTCTTGgtttttgctatttttttttttttgtttctgag

Function

symbol description
arf5 Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane. Is expressed in axial chorda mesoderm; axis; central nervous system; notochord; and polster.
zgc:77650 Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane. Is expressed in notochord and polster. Orthologous to several human genes including ARF5 (ADP ribosylation factor 5).

NR:

description
ADP-ribosylation factor 4

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07940 ARF5; ADP-ribosylation factor 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006805 True 3005 mRNA 0.40 6 20656253 20666945

Neighbor

gene id symbol gene type direction distance location
AMCG00006800 NA coding downstream 18649 20627532 ~ 20637604 (-)
AMCG00006799 odf3b coding downstream 38303 20612370 ~ 20617950 (-)
AMCG00006796 rabl2b,rabl2a,LOC107662875,LOC107600941 coding downstream 77777 20574797 ~ 20578476 (-)
AMCG00006795 LOC102794702 coding downstream 602445 20047941 ~ 20053808 (-)
AMCG00006789 NA coding downstream 656752 19986747 ~ 19999501 (-)
AMCG00006806 dennd6b coding upstream 22447 20689392 ~ 20707958 (-)
AMCG00006808 NA coding upstream 100817 20767762 ~ 20844220 (-)
AMCG00006810 NA coding upstream 252589 20919534 ~ 20934215 (-)
AMCG00006814 st8sia1 coding upstream 365453 21032398 ~ 21048481 (-)
AMCG00006812 NA coding upstream 387995 21054940 ~ 21088079 (-)
G112410 NA non-coding downstream 576842 20078891 ~ 20079411 (-)
G112292 NA non-coding downstream 1086581 19568517 ~ 19569672 (-)
G112290 grm3,LOC107090533,LOC106924857 non-coding downstream 1090238 19564956 ~ 19566015 (-)
G112289 grm3,LOC108263977,LOC108444204 non-coding downstream 1114285 19541103 ~ 19541968 (-)
G112288 LOC108263977,LOC105018424 non-coding downstream 1118460 19537205 ~ 19537793 (-)
G112496 NA non-coding upstream 47138 20714083 ~ 20756786 (-)
G112557 NA non-coding upstream 330321 20997266 ~ 20997529 (-)
G112562 NA non-coding upstream 348428 21015373 ~ 21016048 (-)
G112563 NA non-coding upstream 350256 21017201 ~ 21017740 (-)
G112568 NA non-coding upstream 357761 21024706 ~ 21031872 (-)
AMCG00006807 NA other downstream 2594 20647320 ~ 20653659 (-)
G112420 NA other downstream 420047 20235856 ~ 20236206 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other downstream 1020328 19633093 ~ 19635925 (-)
AMCG00006773 tmem243b,tmem243 other downstream 1024358 19623155 ~ 19631895 (-)
AMCG00006754 NA other downstream 2289691 18339270 ~ 18366562 (-)
AMCG00006813 NA other upstream 187112 20854057 ~ 20964562 (-)
AMCG00006841 NA other upstream 1463550 22130495 ~ 22197664 (-)
AMCG00006854 NA other upstream 2286231 22953176 ~ 22958306 (-)
G113050 NA other upstream 2737230 23404175 ~ 23407207 (-)
AMCG00006866 NA other upstream 2901210 23568155 ~ 23571133 (-)

Expression


Co-expression Network