AMCG00006806 (dennd6b)


Basic Information

Item Value
gene id AMCG00006806
gene name dennd6b
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20689392 ~ 20707958 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006806
ACTAAATCATTGGGGACATGCAATGGCACTTACTTtatcaaatgttaaaatgccaattaaaagaaatccaattaaataaataataagaacacTGCCAGTGAACATCAGAAATACACAAGAAACACATACACCGTATAAAACCATCATCTGGCAACGTGCTGATGCTGTGCAACAGGATTTgcgagaaaaaacaacaacattgacaACAAAGGCGATGCTGCGGTGGAGGGAAGTCCTCCTCGATGGAGGGCGCTGTGATCCTGTCCCCCGGAGCAGCATCCGCCGTGCGAGACGTCCAGGACGATGAGGAGACGGCTTGTTGAGCCGTGATGGACCCCTTTGAAAACAACGAGCCCCGCAGCTGCAGTAACCCGGAGAGAGGTGCCGAGGCTCCGGCCGGTCGCCTGCCGTGGGCCCGCTTCTCGTCCTGGctggagtgtgtgtgcgtggtgGCCTTCGACCTGGAGCTCGGGCAGGCCATCGAGCTTGTGTATCCTCATGATGTTAAACTAACAGAGAAAGagaaaACAAGCATATGCTACTTGTCCTTTCCAGATTCCTACTCAGGTTGTCTCGGAGACACACAGTTCAGCTTCAGAGTACGTCAGTCTGTTGGACAGAAGAATTCGTGGTTTCGCGATGAAGATGCTTACAACAGGGATGCACCAGTGACAATACAGAGAGAACTGGCACATTATTACGGCTATGTGTATTTCAGACAAGTTAAGGATGTTTCTGTTAAAAGGGGGTATTTTCAAAAGTCTCTGGTCCTGGTCTCCAGACTGCCCTATGTCAACCTTTTCCAATCACTGCTACAACTCATCGCACCCGAATACTTTGAGAAGCTAGAGCCCTGCCTGGAGGCCGTGTGTAATGAGATTGATCAGTGGCCGGCTCCGATACCAGGACAGACCCTCAACTTACCGGTGATGGGGGTGGTGATGCAGATCAGAATCCCTTCCAAGAATGACAAGCCTGGGGCCAGTCCTCTGAAGCAGGCCTACAAGGAGAATCTTCTTCCAGCTCCCATGGTTCTACCTACGGTCCATGAACTGGACTTATTCCGGTGTTTCCAGTCCATCCTGATTCACATTCAGATGCTCTGGGAACTGATTTTACTAGGAGAGCCTGTTGTTGTCATGGCACCCTCTCCCACCGTTTCCTCAGAAACTGTACTGGCACTGATCAGCTCCATTTCTCCACTGCGATACTGCTGTGATTTCCGCCCCTACTTTACAATCCACGACAGTGAGTTTAAAGAATACACAACCAGGACTCAGGCCCCGCCAAATGTGATCTTGGGGGTTACAAATCCCTTCTTCATCAAGACCTTCCAGTACTGGCCTCATATCATCCGTTTGGGAGATCTCAAGATGTCCGGTGATTTGCCAAAGCAAGTGAAAGTGAAGAAACTGACAAAATTGAAGACCCTAGATACGAAACCAGGTGTATATACAGCTTATAAAACGTTTCTTCACAAAGACAAGGCGCTTATCAAACGGCTCTTAAAAGGAATTCAGAGGAAGAGGCCATCAGAAGTGCAGAGTGCAATCCTGAGAAGACACTTGCTAGAGCTGTCACAGAGCTTCATCATACCACTGGAGCGGTACGTGGCGAGCCTCATGCCACTCCAGAGAGCTGTGACGCCTTGGAAGaaCCCTCCTCAAATTCGCCCGTTCAGCCAGGAAGAGTTCATGGCCACCCTGGAGCACGCTGGGCCTCAGCTCACCTCTGTGCTGAAAGGGGACTGGATGGGTCTTTACAGACGATTTTTCCGATCCCCTAACTTTGACGGCTGGTATCGCCTACGGCACAAAGAGATGACCCAGAAGCTGGAGTGTCTTCATTTGGATGTGATCTGCGAGGCTGACTTGCTGGCGTGGATTAAAGATAAATCGGAAGTGGAAATTGTGGATTTGGTCCTGAAACTACGAGAGAAGCTGGTGCGAGCACGTCTGCAGCAGCTGCCGGTCAAAGACGAGGTCCTTCAGCAGCTGGAGCTCTACATACAGACCATCATCGGCTCCCTGCCCAAGGACCTGCAGGCTGTCCTCCATCGCCACTGACCAGCCAGCCCGGACTGTCACGAGACAGAGTGCTGTTCCCTCTTCTCAATGCAGATGCTTCATCTCACCGCATACAGCCAGATGCATGTCTGTTCAGAAATGGTTTTCTCACTGTCATAATCAAGCAAGATGGCATTGAATTCCACTCTCACAGACCCCAGGGAGGTACAGTCAATCGCCATTTCCATCTGTTCATGATTTCCTATATAGAAGAACCACTCCACACACCAGCAACTTTTTTACACAGTGTCCACAAGAGAGCATTACTCCATCTCAAATAGTTGTGTACCCTTCGCACAGTATTTCACAATacttgaaatgaaaaaacaccaccaccctACTGGTATAAATAAGATTGTATGTCAATCTTAAGGGGAGACCGCTGCTTTTTCTTGTGCAGTATAATTACATCAACCAGCCATTTGTCTTATCAAAGCTGCCAAAGAATTTATACCCAGTACGTTAAGAATGTAATTCAACTGTTGATTTAAAGATTTTGTATTGAAATCAATCCATCTGTTTGAACATCGTGAGCTGTTATATTATGTACGTAGTTGGGATGAGCAACTACAGACATGGGTGACAGCAGCACCCATTGTGGTTTGATTGttctttattacaatgttataaCAAGAAAACAGACGTTTCTAGAGCCAAGCATTTTAACATGTGGTGTGGCCCCCCGTGTTCCAATGCGTTAGTAGAtggaaaaaagtacaaaatattgCTATTTAACAAGCACAAACATCTATTGCATTACCTATTTTTTCAATTCAGTGatgcatttcttaattaaaatactggGAATAAATTCTAAGAAAAACATACTTTGATGTAATAGCATTGTAgaccattttctttatttttttaaaaaatatatattgttacgTATGATTGTTTCATTAGCATTTGCAATGCAATGTTCTCTTCTGGAGGGGTGTGCAATAGTGGTCAGTGTACAGTTGAACCAAAGTCAGGCTGCAGTGAAGCTGCTACTGCAGGGGAAACTCAACCCGTCTCCAATAGCAGTCGTTTTTGTGATTTGTAAACCTTATTTATATTGGACACTGTAGGCCTGGAAAGAGAGGCTGAAAACTTCCTACACAGGGCGCACCCCTCTTCCTGTATATATTTGGTCTCTATCAATGTGAGGGGATctggttttatttcttatttctatgctggtttatttttattcatccTGTCGAATGTAAGAGAGCAGGCTGCTCGTGATTTTAAATGGGTGTGTTTGCAGCTGCGTTCTGCTTTATTTGTGAAAGACACACATGGTGAAGCAACACTGGAGTGTTTGAAGCAACAGGTAACGCAGATATGGTGTTGTTTCCTTCTAGAGCTCGACTGTATTATGAATCggtttaaaatgtatggtaGTGTAAAATAGCTTGTGGTGTTTTTCCCCCTTGGTAAATTTCTGTGAAATGGTTACTTTTATGGATGTTACGTTTGAACTAGTCTGACACTTGGTACAAAAGAATGTGAAACAAACTTactaataaaaactgaaaactaata

Function

symbol description
dennd6b Predicted to be located in cytoplasm. Predicted to be active in recycling endosome. Is expressed in central nervous system; cranial ganglion; retina; telencephalon; and yolk syncytial layer. Orthologous to human DENND6B (DENN domain containing 6B).

NR:

description
PREDICTED: protein DENND6B isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006806 True 3599 mRNA 0.45 21 20689392 20707958

Neighbor

gene id symbol gene type direction distance location
AMCG00006805 zgc:77650,arf5,LOC107559620,LOC107599973,LOC105888566,LOC107599983,LOC105912562 coding downstream 22447 20656253 ~ 20666945 (-)
AMCG00006800 NA coding downstream 51788 20627532 ~ 20637604 (-)
AMCG00006799 odf3b coding downstream 71442 20612370 ~ 20617950 (-)
AMCG00006796 rabl2b,rabl2a,LOC107662875,LOC107600941 coding downstream 110916 20574797 ~ 20578476 (-)
AMCG00006795 LOC102794702 coding downstream 635584 20047941 ~ 20053808 (-)
AMCG00006808 NA coding upstream 59804 20767762 ~ 20844220 (-)
AMCG00006810 NA coding upstream 211576 20919534 ~ 20934215 (-)
AMCG00006814 st8sia1 coding upstream 324440 21032398 ~ 21048481 (-)
AMCG00006812 NA coding upstream 346982 21054940 ~ 21088079 (-)
AMCG00006816 NA coding upstream 399252 21107210 ~ 21129674 (-)
G112410 NA non-coding downstream 609981 20078891 ~ 20079411 (-)
G112292 NA non-coding downstream 1119720 19568517 ~ 19569672 (-)
G112290 grm3,LOC107090533,LOC106924857 non-coding downstream 1123377 19564956 ~ 19566015 (-)
G112289 grm3,LOC108263977,LOC108444204 non-coding downstream 1147424 19541103 ~ 19541968 (-)
G112288 LOC108263977,LOC105018424 non-coding downstream 1151599 19537205 ~ 19537793 (-)
G112496 NA non-coding upstream 6125 20714083 ~ 20756786 (-)
G112557 NA non-coding upstream 289308 20997266 ~ 20997529 (-)
G112562 NA non-coding upstream 307415 21015373 ~ 21016048 (-)
G112563 NA non-coding upstream 309243 21017201 ~ 21017740 (-)
G112568 NA non-coding upstream 316748 21024706 ~ 21031872 (-)
AMCG00006807 NA other downstream 35733 20647320 ~ 20653659 (-)
G112420 NA other downstream 453186 20235856 ~ 20236206 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other downstream 1053467 19633093 ~ 19635925 (-)
AMCG00006773 tmem243b,tmem243 other downstream 1057497 19623155 ~ 19631895 (-)
AMCG00006754 NA other downstream 2322830 18339270 ~ 18366562 (-)
AMCG00006813 NA other upstream 146099 20854057 ~ 20964562 (-)
AMCG00006841 NA other upstream 1422537 22130495 ~ 22197664 (-)
AMCG00006854 NA other upstream 2245218 22953176 ~ 22958306 (-)
G113050 NA other upstream 2696217 23404175 ~ 23407207 (-)
AMCG00006866 NA other upstream 2860197 23568155 ~ 23571133 (-)

Expression


Co-expression Network