AMCG00006807


Basic Information

Item Value
gene id AMCG00006807
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20647320 ~ 20653659 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006807
CGTCTGTCTCTTCATCCCGCACAGCTGCTGCGCAGGGAGGCCGTGACTGCTTCTGGTTTGTCTGCGTTGCATGGTTCGGTGGGTCGAGGGAACCCACTGGGAAAACACGATCACTTTGGAATGCCTGGGACCACAATGCCAGTTATTCAAAGAACAGTGGAAAGTAACATAGACCTGGACCCAAACGCATCTCCAACCCACCTGCCAACACATTTTGGCAGACGTCTGCTCCCAAGGGCAGACCACCAGTCTCTAGGTCTCTCTGAGATCTGGCTGTAC
>TU140855
ATAATCTTTTTGATGATGTAACTCCCATATGTGTATTTAAGACGAAGACTTTCTGTTCAGACAGAAGGTCTTCCGAGCTTCCTGCTTTACTTTTCAATGGGTCCAGTGGCCATGGATTCCATTCCTGTTCTGCTTGCTGTAGCTGTCTTTTAGATTTGGGAACATGATTCTGTGGACTATTTTCAGACGTCTGCTCCCAAGGGCAGACCACCAGTCTCTAGGTCTCTCTGAGATCTGGCTGTACTGGTGAACTGAGCCAACTGGCAAATACTATCGTTCTGAAGATGGAACAGAATTAATGACAAATGTAGAATGAAGAAATAATGTGAAGCAATGTAATAAAGCCTGCAAAGATCAAAGCAACCACACAAAGACAACAAACCCTGAACCTCAACTGCCTCTCGTACGCTACCATAAAGAAACCAATGAAACCCtgctgaatgtttgtttttactgaatcCTCAATGACGTCTATTTACTCTGCGGTTTATTTTGGTGCTGTGAGAAAGGGTGTAAATTAACACTTGGTTTGCCGTGTGCACAAATACTACAGCACATTTGAGTGTGCTGCAGTAGGTGTCACACGGGAACTGGCTTGTGGTTGTCTACATTGCTTGGTTGGGTGGTCCTCCCGGGACTCactcgtaaaaaaaaaaaaaaaaaagtgatgtgaaaaaaaaggCATTCTGCATATCttcctgctttaaaaaataataaaaatagaaaaatgtgaaacaatatGCTGTTGCTGTCTCTTcctaatataattaataatgtacagTACATGCTTTATGGGGT
>TU140857
TGGACCAGCTGGGGCGGGTCGGCGTCCGGGGagtaacaaacagaaatgtaaacccTATTTTACaggattttactttaaaattaatgaaCGGTCATGTATAACAACTTTGAATTGTTGTGTCATTGCtgctaaaaacaataaaatgggGCATTATAGGTGTGTGGGTGGAGCCTGTGAGATGACGTGCGGCCCGTATATAAACAGCAGCGCTGCGTGCGTCTGTCTCTTCATCCCGCACAGCTGCTGCGCAGGGAGGCCGTGACTGGGTGCCTTTAACGATGAGGGCCCATCCTTTTCTGCTTGCTTAAACCTATTCAGgaggaggagaaggcgATATCCCTGTTCCCACGACAGGGAGACCATGTCCCAGTCAGGGATGTGGGTGGGCAGATCCAGTGTCACAGCTTGTCAAGATCTTAAAGCGTGAAAGCACTGACCTCGAAGCAGCGTATCAACGTGACAAAGACACAGAAGCATCCTACAAAAACAACCAGAAAATTTCCCTTACCCTTTCCCTTAGCTTCTGGTTTGTCTGCGTTGCATGGTTCGGTGGGTCGAGGGAACCCACTGGGAAAACACGATCACTTTGGAATGCCTGGGACCACAATGCCAGTTATTCAAAGAACAGTGGAAAGTAACATAGACCTGGACCCAAACGCATCTCCAACCCACCTGCCAACACATTTTGGCAGGTGGGTTAAAGTGTGGGTTTAGTCCGGGCCCAAGTCTCCTAAAACTGTCTTCAGATGACTTAATTTCGCCCAGGACTTTATAATCAAGGCGGGAcgcattgttttcttaaaaaaataaatgaataaaaaaagaaaaatctgaaactga
>TU140858
CAGAGGGTGCTGCTGGGATTGAAACATGAGGTGTGTGGGTGGAGCCTGTGAGATGACGTGCGGCCCGTATATAAACAGCAGCGCTGCGTGCGTCTGTCTCTTCATCCCGCACAGCTGCTGCGCAGGGAGGCCGTGACTGGGTGCCTTTAACGATGAGGGCCCATCCTTTTCTGCTTGCTTAAACCTATTCAGgaggaggagaaggcgATATCCCTGTTCCCACGACAGGGAGACCATGTCCCAGTCAGGGATGTGGGTGGGCAGATCCAGTGTCACAGCTTGTCAAGATCTTAAAGCGTGAAAGCACTGACCTCGAAGCAGCGTATCAACGTGACAAAGACACAGAAGCATCCTACAAAAACAACCAGAAAATTTCCCTTACCCTTTCCCTTAGCTTCTGGTTTGTCTGCGTTGCATGGTTCGGTGGGTCGAGGGAACCCACTGGGAAAACACGATCACTTTGGAATGCCTGGGACCACAATGCCAGTTATTCAAAGAACAGTGGAAAGTAACATAGACCTGGACCCAAACGCATCTCCAACCCACCTGCCAACACATTTTGGCAGGTGGGTTAAAGTGTGGGTTTAGTCCGGGCCCAAGTCTCCTAAAACTGTCTTCAGATGACTTAATTTCGCCCAGGACTTTATAATCAAGGCGGGAcgcattgttttcttaaaaaaataaatgaataaaaaaagaaaaatctgaaactga

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component

KEGG:

id description
ko00280 Valine, leucine and isoleucine degradation
ko03010 Ribosome
ko03050 Proteasome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006807 False 279 mRNA 0.54 3 20647874 20652624
TU140855 False 798 lncRNA 0.40 3 20647320 20649616
TU140857 True 840 lncRNA 0.47 3 20651041 20652840
TU140858 False 714 lncRNA 0.49 4 20651041 20653659

Neighbor

gene id symbol gene type direction distance location
AMCG00006800 NA coding downstream 9716 20627532 ~ 20637604 (-)
AMCG00006799 odf3b coding downstream 29370 20612370 ~ 20617950 (-)
AMCG00006796 rabl2b,rabl2a,LOC107662875,LOC107600941 coding downstream 68844 20574797 ~ 20578476 (-)
AMCG00006795 LOC102794702 coding downstream 593512 20047941 ~ 20053808 (-)
AMCG00006789 NA coding downstream 647819 19986747 ~ 19999501 (-)
AMCG00006805 zgc:77650,arf5,LOC107559620,LOC107599973,LOC105888566,LOC107599983,LOC105912562 coding upstream 2594 20656253 ~ 20666945 (-)
AMCG00006806 dennd6b coding upstream 35733 20689392 ~ 20707958 (-)
AMCG00006808 NA coding upstream 114103 20767762 ~ 20844220 (-)
AMCG00006810 NA coding upstream 265875 20919534 ~ 20934215 (-)
AMCG00006814 st8sia1 coding upstream 378739 21032398 ~ 21048481 (-)
G112410 NA non-coding downstream 567909 20078891 ~ 20079411 (-)
G112292 NA non-coding downstream 1077648 19568517 ~ 19569672 (-)
G112290 grm3,LOC107090533,LOC106924857 non-coding downstream 1081305 19564956 ~ 19566015 (-)
G112289 grm3,LOC108263977,LOC108444204 non-coding downstream 1105352 19541103 ~ 19541968 (-)
G112288 LOC108263977,LOC105018424 non-coding downstream 1109527 19537205 ~ 19537793 (-)
G112496 NA non-coding upstream 60424 20714083 ~ 20756786 (-)
G112557 NA non-coding upstream 343607 20997266 ~ 20997529 (-)
G112562 NA non-coding upstream 361714 21015373 ~ 21016048 (-)
G112563 NA non-coding upstream 363542 21017201 ~ 21017740 (-)
G112568 NA non-coding upstream 371047 21024706 ~ 21031872 (-)
G112420 NA other downstream 411114 20235856 ~ 20236206 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other downstream 1011395 19633093 ~ 19635925 (-)
AMCG00006773 tmem243b,tmem243 other downstream 1015425 19623155 ~ 19631895 (-)
AMCG00006754 NA other downstream 2280758 18339270 ~ 18366562 (-)
G112059 NA other downstream 3013875 17632891 ~ 17633445 (-)
AMCG00006813 NA other upstream 200398 20854057 ~ 20964562 (-)
AMCG00006841 NA other upstream 1476836 22130495 ~ 22197664 (-)
AMCG00006854 NA other upstream 2299517 22953176 ~ 22958306 (-)
G113050 NA other upstream 2750516 23404175 ~ 23407207 (-)
AMCG00006866 NA other upstream 2914496 23568155 ~ 23571133 (-)

Expression


Co-expression Network