AMCG00006810


Basic Information

Item Value
gene id AMCG00006810
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20919534 ~ 20934215 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006810
GAACAAAGCTTTTTATTTCCACCACGCTGGGGAAGTTTCTGCTCAAGCGACGTGTCTCCTGTTTCCCCCTGAATATCCGAAGTTATTATTAGGCGTCTATAACCTGAACACTAAAATGGGTGAAATACAGCTTCCAAGACGTTTATTTCTCTGGAGCATGTCAGTTATTTATATGTTTGCATTTGCATCGCTGTATATTCAGATACCAGGTCTCTATGGCAATGAAGGTATCCTGCCTGCCCGCTGGTTGATGCGCTACACTGGAAAGCCCATGCTGGAGCAGCTGAAAGACTCGCCCACCTTGCTATGGCTGGGCCCGATGCTGGGCTTGGACACTCAGCAAGGAATGGAGCTGATTTGCCTGCTGGGGACTCTGCTGGCCTTTGGGGCAATGGTGTTGGAGCCTATGAGAGACAGTCTGATCTTCTTCTGTCTCTGGGCTCTTTATCTTTCACTTTACCAGgttggTCAAGTCTTCCTCTACTTTCAGTGgGACAGCTTGCTGCTAGAGGTGGGCTTTCTTACGATCCTTGTAGCCCCCTTGAACCTGTTCAGATGGAAGCAAGGCTTAAAACACCATGACGGCATCACCTTTTGGTTGCTCCGCTGGCTGCTCTTCCGCCTCATGTTTGCCTCTGGAGTAGTCAAGCTGACCAGTCGCTGCCCGACGTGGTGGGGTCTCACAGCTCTGACATACCACTACGAAACTCAGTGCATCCCCACTCCCCTGGCTTGGTACGCGCACCAGGCCCCGGTGTGGTTTCAGAAGCTCAGTGTGGTCGGCACGTACGTCATCGAGATCGCGGTGCCATTTCTCTTCTTTCTACCCATCCGAAGCATGCGAATCTTGTCCTTTTACTTACAGGTGCTGCTTCAGATATGTATATTACTAACCGGGAATTACAACTTCTTCAATCTCCTCACCATTGCGCTGTGTTTCTCCTTGCTTGATGATGAACACATTCACGTATGGCATGGACAATGCAAGAAGAAGAAATCCAAATCCTGGATGCAGACCCTTGCCTCTTGGGGTGAAGGACTAATTAATTTAGCACTCTGTGGAGGGATCATATACTGTACTGTGGTGTATTTTGAACTTAAGATCAATTGGGAGACTAAATCAATATCATCAAAAACAGCATTCACATATCATGAATTTAACCAGTGGCTTAAGATGATTACCGGTCCCACCATTTGGATCGGTGTCCTCTCTCTTACATGGGAAATAGTCACAGCCATGTTCAAgtgtgcgtgtgtgcgagGCTTCTTCTGGAAGCTGTGGTCTACAGTCCAGTGGGCAATATTTGCTTCGGCAGCAGCTGGCATGTTTGCAATCAGCCTGGTTCCTTATACATTCATCGAATATGATGCCAATAGCAAAATATGGCCGGGTATCAAAAGGGTTTATGATGATGTTGACCGTTTCCAGCTGGTGAACTCCTATGGGCTTTTCAGGAGAATGACTGGGGTCGGAGGTCGCCCTGAGGTTGTTCTAGAGGGCAGCTTTGACAAGGAAACGTGGACAGAAATTGAGTTTATGTATAAGCCTGGTAACGTCAGTGGCCCTCCCCCTGTAGTGGCTCCACACCAGCCTCGCCTTGACTGGCAGATGTGGTTTGCAGCTTTGGGCCCCCAGGCGCACAGCCCCTGGTTCACTGGACTGGTCCATCGGCTGCTGCAGGGCAAGAAGGATGTGATCAGTTTGATACAGACCGATGAGTCTCAGTACCCATTTAGCCAAAATCCTCCTGTCTTCATCCGAGCTCAACTCTACAAATACTGGTTCATCGATGATGTATCACAAACCAAACAATGGTGGCGGAGACAGTTCATTGAAGAATTTTACCCCACTGTGTTTCTGGGGGATCCCAATCTGGAAGCTTTGCTCAGTCAACATGGACTCAAGGACAAAGGACCTGCAAAACGTAGCACAGAAGCCTTTGTCCCGGCCACCTTAAAATGTATCCGTGAGCATGTTGGACCCCTCACTGGTCCCCAGGTCCTGCTGTCTCTGTTCGTCACTGGATTGGCCATCTGTGTCCTTAAAGGCCTGTTTGGCAGGGCTCCCCGAGCCAGCAAACCAAAGCCTGCTGTAGCTGAAAACAAAACCCGAAAGGCTAAGGATGTGCCGGTGGCTGCCGAAAAGAAGGATCACGGCAAGAAAAAAGATGTTTCTGGTTCAACCAATGAGGAAAAGGAAATTACTGAAGAAAAGCCCATGGATTCTGAGAAAAGCACCAAGAGAAGAAAGTAAAGTGTTGCCTACTGCTCTGTGTTCTGGCAATAGAAGACATGAAGGCATCTCCCAAGTGCCATTAGAGGGGTTATGTCAATGCgttttataatttttcatttcacaaattaGGTCAATACAAAGGAATGCATAGTTTTTAGTTTCCcacatataataaatattatgaaGTGATTATAGTGATTTTTCCAGTGTTGCTGCTCTGTGCTTGAATTgcaccagtgttttttttttatttattttttattattattgggggGCACGGTTTGTGAACATGCAAAAGATCCTAAAACCATAGTGAGAGGTGCTTGGTTAGGCATCACTCTCTATGTGTAACTAATGTGGCTCTTTGGTGTCTGAATCCTTGGAACTACAATATCTTAAAACCAAAGTGGATACCAGCAAGTAATATCAAATGAGTGACCGTAGTTCATTGAATCTGGGATTGTGTTTTTAACTTCAGGGATAAGGTTGGGTTGGTGCATTCTGGTAATTGAGTGGTTCCTTAATTTGGCTTTAGAACTACAGGGTTCATCCACTACTATGGAAATGgcattttttccccactctttttaaaatactttatatatggTTTCATCCATTCATTCTTGCTCTTTCTAGACCTGTATTTTGGTTTCTTGTCAGGTAAAACCATGCCATTGTGTTTGAGGTTCAGACATTGACTACAGTGCAATGGTTCAGTTCAGAATCATTCAAGGCAAATCGATTTGGTCCCctcaaataataatgtatcgTCATATATTTCCCCATGTTACAATCCTGCAGTTTGTTTAAACAGgcaattttgcatttatttttactaaaatatCAGTGGGATTTCTGCATTCTATCTTTCTGTATTTGCAATTCAGCCCAGATTTTAACTCAAACCATTcgttttatgtttatttgttagtGGCGTTCCTAATCGGATGTCACTACTTTACTGATAATGGATTACATTCCAATTGTGGGTAGCTTTTACCACATTACTTTTTCCTTATCTTCAACTAGCAAGTATCATAAATGTTAAGCAATAGGCTTCAATAtcttattttttggggggggaggtATGGAATCAAAAGTagagttttatatatatacattttacatgttccATCTATTTTGATGCTTGCTCTGTAGGTTAACTTCAGCATTACTTCATGGATTATTTTGCTGGTAAATCCTCAAGATAAtctatacttattttaatacttatctGCTCTGCAGGCCTTTTCATTTGCATTCCCAGAACTCACTGCTTTTGCTGACAGGAAGTGGTACTTGCTCCATGTGAAGtcctgatgtattttttttcctctgtataTAAGCTTCCAGAGCTCTCTTTTGTAAATGGTTGTGTAACACAGCAAGAAATAGTGCCTCCTGGCTGCAAACTTTTGGTTATGGGAATACATTCAGTAACCTTTTCCTTCTTTCTATGGCAGATGCAAGTTATTCTTTCCATTGCACTACGCAAGAGCACAAAATCATAGATCTTTAGCCATGGACTGCCTTTTTGAGATGAAGCCTTTGTGTagttgtgtgaaaaaaaaactgatggtATAAATGAGTTGGGTGtagattttaaatgattgagTGATTTGTGCTCAGTAAGGTCAAGATAAATTATCACTACCTTTCAAGAAATGATTTACCTAGTGAAtcgtatttaaaaaatatattaaaataaaatcatgttcATGTATGAACTTGAGTTACGGGTGGAAAATctccaaagaaaaataatttaagtaaggtggggggaaatgttttcttcataCAAGCTGAATAAGTGTGGTTGTCGTTcatattaaacacaatattgtagACATTACATTTGGAAGCTGTTATTAATGTATCTCtaatatgtaaattacatttgaaatcaaCTTTACTATCTGACTTCAAGATAATACAGATAGCTTGGTAAAAGTAAAAATCCCACACTAATGGCtatgaaatgtttgtttatattgacTCACCACGCCTTACTTTATTGCATTCAATCTCAAGTGTTGAAAGGTCTCTGTGTAATGTTACATGATTTTGTCTCTGAACATAATCCTTGCAATCGCAGACATCCTTCCACCATATTGCTAATTGATAAAGAAACCATGCCGTTCTGATGTTGGACACTAAAACGTTTTTACCCCTTCTGTTTTGCAAAGCTGTTTAATTATTGAATGTGCACAGAGAATTTTAATACCCTTGATCTCAGGAAGTGGTCCAGCAGGCCCACTAAGTGTAAAGTTAGTGACTGTCATcatgatttttagtttttaacatcAGAAATCTAATGTATATTGTGTTGAATATTTTCaacttatttatatacatgtatgtcaGTTGTTTTAGGGTATTGTCCAGCTGGTAGGAGAGAATGACGGGTTCTGTATTAATCTAGTCACCAGAGCACCAGAGTACgctgattcattttaaaatcaacctGTGCACTATCCGTAATGCAAACAGCCTTTTTTCTGCCTTATTCATCTTTGAAAGAATGTAAAAGACCCAGGGAAGTAAAAGAAGCAAagagtaaaatgttttaaaactctattgtatttataataaaataaacttttgaattaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006810 True 4846 mRNA 0.41 14 20919534 20934215

Neighbor

gene id symbol gene type direction distance location
AMCG00006808 NA coding downstream 75314 20767762 ~ 20844220 (-)
AMCG00006806 dennd6b coding downstream 211576 20689392 ~ 20707958 (-)
AMCG00006805 zgc:77650,arf5,LOC107559620,LOC107599973,LOC105888566,LOC107599983,LOC105912562 coding downstream 252589 20656253 ~ 20666945 (-)
AMCG00006800 NA coding downstream 281930 20627532 ~ 20637604 (-)
AMCG00006799 odf3b coding downstream 301584 20612370 ~ 20617950 (-)
AMCG00006814 st8sia1 coding upstream 98183 21032398 ~ 21048481 (-)
AMCG00006812 NA coding upstream 120725 21054940 ~ 21088079 (-)
AMCG00006816 NA coding upstream 172995 21107210 ~ 21129674 (-)
AMCG00006817 NA coding upstream 229757 21163972 ~ 21172849 (-)
AMCG00006819 wash1,LOC103045331,LOC107662897,LOC107735466 coding upstream 268836 21203051 ~ 21235769 (-)
G112496 NA non-coding downstream 162748 20714083 ~ 20756786 (-)
G112410 NA non-coding downstream 840123 20078891 ~ 20079411 (-)
G112292 NA non-coding downstream 1349862 19568517 ~ 19569672 (-)
G112290 grm3,LOC107090533,LOC106924857 non-coding downstream 1353519 19564956 ~ 19566015 (-)
G112289 grm3,LOC108263977,LOC108444204 non-coding downstream 1377566 19541103 ~ 19541968 (-)
G112557 NA non-coding upstream 63051 20997266 ~ 20997529 (-)
G112562 NA non-coding upstream 81158 21015373 ~ 21016048 (-)
G112563 NA non-coding upstream 82986 21017201 ~ 21017740 (-)
G112568 NA non-coding upstream 90491 21024706 ~ 21031872 (-)
G112589 NA non-coding upstream 161126 21095341 ~ 21096308 (-)
AMCG00006807 NA other downstream 265875 20647320 ~ 20653659 (-)
G112420 NA other downstream 683328 20235856 ~ 20236206 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other downstream 1283609 19633093 ~ 19635925 (-)
AMCG00006773 tmem243b,tmem243 other downstream 1287639 19623155 ~ 19631895 (-)
AMCG00006754 NA other downstream 2552972 18339270 ~ 18366562 (-)
AMCG00006841 NA other upstream 1196280 22130495 ~ 22197664 (-)
AMCG00006854 NA other upstream 2018961 22953176 ~ 22958306 (-)
G113050 NA other upstream 2469960 23404175 ~ 23407207 (-)
AMCG00006866 NA other upstream 2633940 23568155 ~ 23571133 (-)
G113530 NA other upstream 5565800 26500015 ~ 26500681 (-)

Expression


Co-expression Network