AMCG00006813


Basic Information

Item Value
gene id AMCG00006813
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 20854057 ~ 20964562 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006813
ATGCCAGAACAGACAGAGCTGGTCCACAGATTCAGAGGAATCCCTTTCTCCACCAGAGCCTCCACAGAGCTGCTACAGTCCCTGGATGACTTTGAGGCCAGAGAAGATGATGTTCTGCTAGTGTCTTATCCCAAATCAGGGACACACTGGCTGGCCGAGATCCTGAGGAATCTGTACAACTGCCACACTGAGAACAACACGACCAGCCAGGTGACTCTGACATCGTCTCTGGAGTTCGGAGATCTCTCCAAATTCCAGGAGCTCAGAAACCTCCCCAGCAAGAGGCTCATCCCAACACACCTCAACTGTGACATGGTCCCCGTGCAgttcaaaacaaagaaatgcaagATGATTTATGTGATCAGAAACCACAAGGACACGGCAGTCTCTATGTTCCATTACTATCAACAGAATCCCCACCTGCCCAAGATTGACAAATGGTCAACCTTTCTGGAGATGTTCCTGAAAGGCCAAGGTAAATGTTTGGACACATCTTTAATATAG
>TU140946
ATATATAAGGGCAGGAAGATCTCCAGATCAATACCTAGCTAGTCACAGTCCATCCAGAGACACTAACTGTGAGGAAACATCCATCTCAAGATGCCAGAACAGACAGAGCTGGTCCACAGATTCAGAGGAATCCCTTTCTCCACCAGAGCCTCCACAGAGCTGCTACAGTCCCTGGATGACTTTGAGGCCAGAGAAGATGATGTTCTGCTAGTGTCTTATCCCAAATCAGGGACACACTGGCTGGCCGAGATCCTGAGGAATCTGTACAACTGCCACACTGAGAACAACACGACCAGCCAGGTGACTCTGACATCGTCTCTGGAGTTCGGAGATCTCTCCAAATTCCAGGAGCTCAGAAACCTCCCCAGCAAGAGGCTCATCCCAACACACCTCAACTGTGACATGGTCCCCGTGCAgttcaaaacaaagaaatgcaagATGATTTATGTGATCAGAAACCACAAGGACACGGCAGTCTCTATGTTCCATTACTATCAACAGAATCCCCACCTGCCCAAGATTGACAAATGGTCAACCTTTCTGGAGATGTTCCTGAAAGGCCAAGTGGTTTATGGTTCCTGGA
>TU140949
tttaatagaggtatttttattgttattactaacAATTCAGagtaataaattacaaaatacacattaacaTTAAGTACAAATGTACCCAAAGTtcagtaaatattaaacatgcatAAGAAAGAAGAATGCACATATGATttataaaaccaaaatcaatTTACATTGCAGTCACAAATCCCACAAAAACCCATTCATTGTAACAGATTaatatacagttcatataaNNNNNNNNNNGCCATTACAAGATTTACGTTGAATAAATTAGATAAACTTATTGAACATATCAATTTTGTACAATGAAAAGTCAGTTTTGACATTcgataagaaaatgaaaatgtgcttgacaataataaataatgaaagaacAGCAAAGTGAGTGGATCTGTCCGTCTCCCTCACTGACACTCATATTGAACACGGCTTGCTAATACACTAGAGTTGATCTTCTCTTTAAACAGCACGTCAAACTGGGCGTTCTGCTTGGAGGTGAAATGGTTCTTCCAGTCACCAACGGCacctTCCTAAAGATGAGCTTCCTGTCAGCTGTCAGTGCGCACACTGTGTGGTTTGAATTCACTTTCTCCTTCTCTGCTTTTTCCTTCATTTCACTGAATGATGATTTCTTTGAGATGTCCTTGATTTGATCTTCCGTGACACTGATGTTCAGAAATGAACTGATCTCCTTGACATATGTGGGGAGATCCTGGAAACACAAATTTGACAGTTTAGTTTGTGCTCTTTCATTCCTGGTTCAACTGAACGACATCTGTTGAATGATATTCACTCCTTATTCCAGCTTCTTCCACAACTGTGAAAGAAGAAATCTCATTTCAAACTCACCTTCTTCATGGACTCATAATACAAGAAGAGTGTGTTTTCAtcattttccttcttctccCAGCTGAGGACGTGATCAATCCAGGAACCGTAAACCACTGCAATGTAAAGAAAgaca

Function

GO:

id name namespace
GO:0071466 cellular response to xenobiotic stimulus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006813 False 504 mRNA 0.48 3 20948876 20949746
TU140946 False 583 TUCP 0.49 5 20854057 20949836
TU140949 True 955 lncRNA 0.35 3 20944169 20964562

Neighbor

gene id symbol gene type direction distance location
AMCG00006808 NA coding downstream 9837 20767762 ~ 20844220 (-)
AMCG00006806 dennd6b coding downstream 146099 20689392 ~ 20707958 (-)
AMCG00006805 zgc:77650,arf5,LOC107559620,LOC107599973,LOC105888566,LOC107599983,LOC105912562 coding downstream 187112 20656253 ~ 20666945 (-)
AMCG00006800 NA coding downstream 216453 20627532 ~ 20637604 (-)
AMCG00006799 odf3b coding downstream 236107 20612370 ~ 20617950 (-)
AMCG00006814 st8sia1 coding upstream 67836 21032398 ~ 21048481 (-)
AMCG00006812 NA coding upstream 90378 21054940 ~ 21088079 (-)
AMCG00006816 NA coding upstream 142648 21107210 ~ 21129674 (-)
AMCG00006817 NA coding upstream 199410 21163972 ~ 21172849 (-)
AMCG00006819 wash1,LOC103045331,LOC107662897,LOC107735466 coding upstream 238489 21203051 ~ 21235769 (-)
G112496 NA non-coding downstream 97271 20714083 ~ 20756786 (-)
G112410 NA non-coding downstream 774646 20078891 ~ 20079411 (-)
G112292 NA non-coding downstream 1284385 19568517 ~ 19569672 (-)
G112290 grm3,LOC107090533,LOC106924857 non-coding downstream 1288042 19564956 ~ 19566015 (-)
G112289 grm3,LOC108263977,LOC108444204 non-coding downstream 1312089 19541103 ~ 19541968 (-)
G112557 NA non-coding upstream 32704 20997266 ~ 20997529 (-)
G112562 NA non-coding upstream 50811 21015373 ~ 21016048 (-)
G112563 NA non-coding upstream 52639 21017201 ~ 21017740 (-)
G112568 NA non-coding upstream 60144 21024706 ~ 21031872 (-)
G112589 NA non-coding upstream 130779 21095341 ~ 21096308 (-)
AMCG00006807 NA other downstream 200398 20647320 ~ 20653659 (-)
G112420 NA other downstream 617851 20235856 ~ 20236206 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other downstream 1218132 19633093 ~ 19635925 (-)
AMCG00006773 tmem243b,tmem243 other downstream 1222162 19623155 ~ 19631895 (-)
AMCG00006754 NA other downstream 2487495 18339270 ~ 18366562 (-)
AMCG00006841 NA other upstream 1165933 22130495 ~ 22197664 (-)
AMCG00006854 NA other upstream 1988614 22953176 ~ 22958306 (-)
G113050 NA other upstream 2439613 23404175 ~ 23407207 (-)
AMCG00006866 NA other upstream 2603593 23568155 ~ 23571133 (-)
G113530 NA other upstream 5535453 26500015 ~ 26500681 (-)

Expression


Co-expression Network