AMCG00006814 (st8sia1)


Basic Information

Item Value
gene id AMCG00006814
gene name st8sia1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 21032398 ~ 21048481 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006814
ATGGTGGTGATGTTTCTGAAATGCCCCCGACCCAAGCTGTCCGTGTGGGCTGCGCTGTGCGTCTTTGTGCTCTGCTGGCTCTACATCTTCCCGGGATACAGGCTGCCCAGCGACAAGGAGATTGTCAGTGAAGTCTTGCGGCAGGGCAAAGTGTGGAAGAAAAACCAGACGGGCATCGCAGTCTTCAGGAACCTGCTGACGGACTGCTGTGATCCGAGGAAGCTATTTGCCGTGACAAAACAGAACTCTCCTCTTGGGAAGACCCTCTGGTACGACGGCGAGTTTTATCACTCCCACACCGTCAACAACGATACTTACTCCCTCTTCGTACAGGAAACCCCTCTGCAGCAGCCACTGAAGAAATGCGCGGTTGTTGGCAATGGCGGGATCCTGAAGCACAGCGGCTGTGGGAAAGACATTGACCAGGCAGACTACGTCATGAGGTGCAATCTTCCGCCACTCTCTAAGGATTACACCGATGATGTGGGGACCAAAACACACTTGGTCACTGCTAACCCCAGCATTATTGAAAAGAGattccaAAACCTTCTCTGGTCCAGGAAGGCTTTTGTGGACAACATGAAAGCCTATGGCACCAGTTACATCTATATGCCAGCCTTCTCCATGAAGCCGGGGACCGAACCTTCCCTGCGAGCCTATCACGCGCTGTCCGACATCGCGGCCAACCAGACGGTCCTGTTCGCCAATCCCGACTTCCTGAGGAACGTGGGCAAGTTCTGGAAGAGCAGGGGGATTCATGCCAAACGCCTCTCCACAGGTCTGTTCCTCGTCAGCTTGGCCCTCGGCCTGTGTGAGGAAGTTACTATTTACGGCTTCTGGCCTTTCTCCGTTGACTTGAACGAGAAGTTCATAAGCCATCACTACTACGACAACATCCTGCCCTTCTCTGGATTCCACGCCATGCCAGAGGAGTTCCTGCAGCTTTGGCTCCTCCACAAGAGCGGGACATTACGGATGCGCATCGGCAAGTGTGACGAGGAAGCGAGTTAG

Function

symbol description
st8sia1 Predicted to enable alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity. Predicted to be involved in N-glycan processing; oligosaccharide metabolic process; and protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including corpuscles of Stannius; forebrain neural plate; kidney; nervous system; and unfertilized egg. Orthologous to human ST8SIA1 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1).

NR:

description
PREDICTED: alpha-N-acetylneuraminide alpha-2,8-sialyltransferase

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0008373 sialyltransferase activity molecular_function

KEGG:

id description
K03371 SIAT8A; alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8A)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006814 True 1011 mRNA 0.54 5 21032398 21048481

Neighbor

gene id symbol gene type direction distance location
AMCG00006810 NA coding downstream 98183 20919534 ~ 20934215 (-)
AMCG00006808 NA coding downstream 188178 20767762 ~ 20844220 (-)
AMCG00006806 dennd6b coding downstream 324440 20689392 ~ 20707958 (-)
AMCG00006805 zgc:77650,arf5,LOC107559620,LOC107599973,LOC105888566,LOC107599983,LOC105912562 coding downstream 365453 20656253 ~ 20666945 (-)
AMCG00006800 NA coding downstream 394794 20627532 ~ 20637604 (-)
AMCG00006812 NA coding upstream 6459 21054940 ~ 21088079 (-)
AMCG00006816 NA coding upstream 58729 21107210 ~ 21129674 (-)
AMCG00006817 NA coding upstream 115491 21163972 ~ 21172849 (-)
AMCG00006819 wash1,LOC103045331,LOC107662897,LOC107735466 coding upstream 154570 21203051 ~ 21235769 (-)
AMCG00006821 NA coding upstream 365839 21414320 ~ 21435187 (-)
G112568 NA non-coding downstream 526 21024706 ~ 21031872 (-)
G112563 NA non-coding downstream 14658 21017201 ~ 21017740 (-)
G112562 NA non-coding downstream 16350 21015373 ~ 21016048 (-)
G112557 NA non-coding downstream 34869 20997266 ~ 20997529 (-)
G112496 NA non-coding downstream 275612 20714083 ~ 20756786 (-)
G112589 NA non-coding upstream 46860 21095341 ~ 21096308 (-)
G112705 NA non-coding upstream 761884 21810365 ~ 21853012 (-)
G112783 NA non-coding upstream 1006141 22054622 ~ 22058136 (-)
G112809 NA non-coding upstream 1209068 22257549 ~ 22257974 (-)
G112878 akr1d1,LOC106917221,LOC103465917,LOC103134490,LOC106953618 non-coding upstream 1621379 22669860 ~ 22670883 (-)
AMCG00006813 NA other downstream 67836 20854057 ~ 20964562 (-)
AMCG00006807 NA other downstream 378739 20647320 ~ 20653659 (-)
G112420 NA other downstream 796192 20235856 ~ 20236206 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other downstream 1396473 19633093 ~ 19635925 (-)
AMCG00006773 tmem243b,tmem243 other downstream 1400503 19623155 ~ 19631895 (-)
AMCG00006841 NA other upstream 1082014 22130495 ~ 22197664 (-)
AMCG00006854 NA other upstream 1904695 22953176 ~ 22958306 (-)
G113050 NA other upstream 2355694 23404175 ~ 23407207 (-)
AMCG00006866 NA other upstream 2519674 23568155 ~ 23571133 (-)
G113530 NA other upstream 5451534 26500015 ~ 26500681 (-)

Expression


Co-expression Network