AMCG00006815


Basic Information

Item Value
gene id AMCG00006815
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 21088361 ~ 21102151 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006815
ATGCGTGGGACTTGCTCTACTGGCTACTCCAGCATTAATTCTCTTTCCAATGTACAGTCGTTTACTGAGACTATCGCTGAAGAGACTGAGATGGAGGCCGAAGCAGAGGAACAGCAAGAGGATGAAGCTGAACCCGAGCCACCTAAACCTACCCCACCAAAACAGGCTACCCCTGCCCCAGCACCCATGTCAAACATAGGAGAGACTCACGCCAAGATTCTCATGCTGGCCAAGGCGAAGGAGGACCTGGAGACGGAGAAATcggagagggaagaggagaaggTCCGCTATCTGGCTGAACGCGTGCCTCCAGTGCAGTTCTCAGGACTGGATTTAGCCGGTCTACAGAAATTGTGCCGGGAGCTAAATGACATCACTGAGCGTGTGGACGAGGAGCGCTACGACATCGAGGCCAAAGTCATCAAGAACTGTCGGGAGGTGCTCACCTCTGAGGTTGGGGACTGGCGTAAGAATGTGGAGGCTATGTCTGGAATGGAGGGAAGGAAGAAGATGTTTGATGCTGCTGGTGGTGGGCAGATGGATATTGTCTTTCACTTTGTTGCCTCCATCCTGCTGCTGATGCCATTAATAGTGTGGGGGAGGGatgcagaaaagaaagaaaacaatgctttaTTGTGCAGGATTACAAGAGATACTAAGAAGGATTTGTCTGGCCTCAATCTTACAGTAATACCACACAACTTGCCTCTGAACACAGAATACCTGGACCTTTCCCACAACAACATCTCTCGACTCAACAGTGGGGATCTGGCTGCTCTGTCCAACCTCTGCATCCTGAAGTTCACTCACAACCGCTTGGAATACATCTCGCCTACAGTCTTCCCGGACAACTCCAAAATACAGGTGCTCAACATTTCCTACAATTCCCTCAAAAACATCCCAGACTTGGCATTGCCTCAACTAATGATCCTTGACATATCAAGCAACCTgtATCTTGCACTTGGGAGTCCAAACGCTAGGTCAATAAATGCCACAGATTTTGGCCCTTTGCAGGACAAGCCTTTAAAAGAGCTGAGTCTCGGGGATGGTCTTGGGTTAGACAGCTATGAATCAGCTTTGAGGCGGCTTTCTCTGAGAAACAACAAATTTCAAGACTTGGACTTCATCTCCGAGAGGACCCAACAGATGAAGACTCTAGACACACTGGATCTCAGCTTCAACTCCATTAAGCTTAATGGACCTTGTACTTGGTCTCCTCAGCTAACCAGCCTCTCCTTGAGCAATAATGACCTGGGCAACTCTATATTTTCAAACCTTTCCCCTTACATCAGAAGTCTCAATCTTTCCAAGACAGGCATTACAGAGTTGAACCAGGAGGCTCTTTCCTTGCTACCGAACTTAACACATCTCTTTTTGAGCTCCAACACTATAAGGACCCTACCAACTAATCTCTGGGCTCCCAGATTGGAGGTGCTGCACGTGGACCAAAACAACATCCTCACCATGAGCAAACAATCTCTGGGAGGCCTGCGCGGCTTGAAGCAGCTAAAGGCCAGCAATAATCCGTTTAGCTGCACCTGTGATTCATACTGGTTTGTGACTGCTTTCAATAAATCTCTTTTACTTGACTGGCCATCTCAATACACCTGTAATGCCCCCTCAGAATTGGCAGGAAAGACTTTAAATGAGTATCAGCCCAGCAGGGCGTCATGTGACCCAGGACTCCGTGCGGCTATAGCTGTTCCACTGATCGTGGTTAGTTTCGCAGTCCTGGGGCTTGTTTTTCACATGTTTGATGGAGCCTGGTACCTGCGGATGCTGTGGGTGTGGATGAGGGTGAAACAGAGGGGCTACCAGGGAGCCAAGCGACTGAGCAAAGGTGCTTTCCACTACCACGCCTTCATCTCCTACAGCCAGATTGACTCCAGCTGGGTGGACAGCCAGCTGGTACCCAACCTGGAGTGTACAAACTTCAGCCTCTGCATTCATGAGCGGGATTTCATGCCAGGGGACTGGATCATAGATAACATCATCAACTGTGTGGAAAGCAGCTATAAGACGCTGTTCGTGCTGTCTCGGAACTTTGTCCAGAGCGAGTGGTGCAACTACGAGCTCTTCTTCGCTCATCACCGCGCTCTCAGCATCAAGGAGGATTCCCTCGTCTTCATTCTGCTGGAGCCCATTCCTGCAGACTCTCTCCCCAGGAAGTTTCTGAGGCTCCGCACTCTGCTCCAGCAGCGGACTTACCTGGAGTGGCCAGAGGAGGAAGGGAAACGGCGGATCTTCTGGGCCAGCCTGAAGGCCATGCTGCAAGTAGCTGATGATCGCATTGTCATGAAGCAAGTGGCAAGGGAAATCGCTGAATCATGTCCGCTTCTGAGCGACACCGATTAG

Function

GO: NA

KEGG:

id description
K05398 TLR1, CD281; toll-like receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006815 True 2355 mRNA 0.50 8 21088361 21102151

Neighbor

gene id symbol gene type direction distance location
AMCG00006809 miox,LOC102303880 coding upstream 169951 20908714 ~ 20918410 (+)
AMCG00006802 NA coding upstream 321300 20760427 ~ 20767061 (+)
AMCG00006803 NA coding upstream 336919 20721803 ~ 20751442 (+)
AMCG00006804 NA coding upstream 395748 20675866 ~ 20692613 (+)
AMCG00006801 NA coding upstream 414010 20667348 ~ 20674351 (+)
AMCG00006818 NA coding downstream 74397 21176548 ~ 21200739 (+)
AMCG00006822 NA coding downstream 241491 21343642 ~ 21354607 (+)
AMCG00006825 iqsec3,LOC106609634,LOC107689713,LOC105020425 coding downstream 264243 21366394 ~ 21385133 (+)
AMCG00006823 NA coding downstream 396882 21499033 ~ 21505375 (+)
AMCG00006824 NA coding downstream 423549 21525700 ~ 21554650 (+)
G112573 NA non-coding upstream 31388 21056350 ~ 21056973 (+)
G112566 NA non-coding upstream 56377 21024279 ~ 21031984 (+)
G112564 NA non-coding upstream 65082 21022933 ~ 21023279 (+)
G112541 NA non-coding upstream 154143 20930234 ~ 20934218 (+)
G112535 NA non-coding upstream 164856 20919527 ~ 20923505 (+)
G112754 NA non-coding downstream 949527 22051678 ~ 22058486 (+)
G112755 NA non-coding downstream 957221 22059372 ~ 22059605 (+)
G112756 LOC108412581 non-coding downstream 961553 22063704 ~ 22064035 (+)
G112757 NA non-coding downstream 963444 22065595 ~ 22065804 (+)
G112758 NA non-coding downstream 966070 22068221 ~ 22068423 (+)
G112567 NA other upstream 39323 21048336 ~ 21049038 (+)
AMCG00006811 NA other upstream 143384 20937497 ~ 20944977 (+)
AMCG00006672 NA other upstream 7148886 13933666 ~ 13939475 (+)
G111197 NA other upstream 8044913 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 8436546 12620062 ~ 12651815 (+)
G112600 NA other downstream 40714 21142865 ~ 21203201 (+)
AMCG00006820 NA other downstream 163102 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 515481 21617632 ~ 21622508 (+)
AMCG00006865 hipk2 other downstream 2406998 23509149 ~ 23554741 (+)
AMCG00006878 ndufb2,LOC102790702 other downstream 2929938 24032089 ~ 24036112 (+)

Expression


Co-expression Network