AMCG00006818


Basic Information

Item Value
gene id AMCG00006818
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 21176548 ~ 21200739 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006818
aTGTATTTACTATGCATCTTTGTTCAAACAGTGCATTTCAAGATGGCTGAGGGCACGTCTCGTTTCCCATTTCCATACCAACCATACTCCATCCAAGAGCAGTTCATGGAGGCCCTTTACAGTGCCCTGGATGAAGGAAAGGTTGGGATTTTTGAGAGCCCTACGGGAACAGGTAAGTCTCTCAGTCTGATCTGTGGCGCCCTTACCTGGCTGAGGGACTTCGAGGAGAAGAAGAGGCAGGAAGCGGCTCGTCTGCTGGAAGCCGAAGCCTCTAGCACTGAGCAGAACCAAAAGGGTGGCCCCCCAAGTCAGGGGAACTCAGACTCCTCTGCTGAGCCAGACTGGATCACAGACTTTGTGCAGAAGAAGGCTGAGAGAGACCTGGTTAACAAGTTGAAGGACGAGGAGTTGAGGcggaagagaagggaggagcgTTTGGAGTTGATACGAAACAACGCCCAGCTCAAATACACACTGAAACGCAAGGTATCGAACTCACTGGAACTTCTTCATCTGCTTTACAGCTGtcatgatgaagatgaagatttAGAAGAAGACCACGTGACCAAGATATATTACTGCAGCCGCACTCACTCCCAGCTGGCCCAGTTTGTACATGAAGTGCAAAAGAGCCCGTTCGCCAGTGATATTCGACTGGTGTCGCTCGGCTCTCGGCAGAATCTGTGCATCAATGAAGACGTTCACAGGCTGGGTAGTGTTCAGCTCATCAATGACCGCTGTATGGagatgcagaaaaacaaacacgagaagaaagagaaggacGAGGAGCCCAAGAGGAAGCGGGGCGCAGCCAAGCCGGTGTGCCCGTTCTCAGGCCATGATGGGCTGCAGGCACTGCGCGACGAGGCGCTGGTCAAGGTGCGGGACATCGAGCAGCTGGTGACCCTGGGGAAGAAGGCCAAGGCCTGTCCTTACTATGGAGGCCGACTGGCCATCCCTGCTGCCCAGCTGGTGGTGCTGCCCTATCAGACGCTGCTACACGAGTCGACACGCCGTGCGTCTGGGATCAGGCTGAAGGACCAGcTCTGTTGCTCTCACTCTCAACTCACTCAGTACATGGAACGCTACCGAAACCGCCTGAAGGCCAAAAACCTGATGTACATCAAGCAGATCCTGTTTGTGGTGGAGAGCCTGGTCCGAATTCTGGGCGgcAGAATAGGACAAAACCCAAATGCACAGGCAACACAACCAGGAACAGAGTTGCAGACCATCAATAACTTCCTGTTTAATGCACAAATTGATAATATTAACCTCTTCAAGgTGCGGCGTTATTATGAAAAAAGTTTGATCAGCAGGAAGTTGTTTGGCTTTGTGGAAAAGTACCAGGGCTCTGGGGTTAACCCGTCTGACAAGGAGAACCACAAGACGGAGGGACTGAGGCGCTTCCTACAGTCCCTGCAGAAGAGCCAGAGCCAAGGAGAACCCAGTCTGGACCCTAATCAGGCGCCAGAGGACGGGCAGCCCAGGATGGCGTCTCCCATGATGCAAGTGGAAGGTTTCCTCTTTGCGCTTACCAACGCCAACAAAGACGGGAGAGTTGTCATCCAAAAACAAGGTGTGCTGGCCCACAGCAGTGTGAAGTTCCTCTTGCTGAACCCCGCTGTCCATTTTGCTGAGGTCCTGAGAGACTGCAGGGCTGTAATCATCGCGGGAGGCACCATGCAACCTGTGGCCGACTTTAAAGACCAGTTATTGCTGTCTGCTGGGTTGAGCCAGAACCGCATTGCAGAGTTCAGCTGTGGTCATGTGATTCCTCCTGAAAACATCTTACCCCTGATCTTCTGCAGTGGTCCTTCAGGGCAGGCACTGGAGTTCACGTTCCAGAACCGAGAAACGCCACAAATGATGGATGAGACGGGACGGATCCTGTCCAACCTGTGCAATGTGGTCCCAGGCGGGGTGGTGTGCTTCTTCCCCTCCTACGAGTACGAGCGCAGGGTGTACACGCACTGGGAGAGCAGTGGCCTGCTTCAGCGCCTCTCCGCCAAGAAGAAGATTTTCCAGGAACCGAAGAAAGCCAGCCAGGTAGAGCAAGTGCTCAGTGACTACTCCCGGTGCATCCAGAACTGCAAACAATCTGGGGGCCCCTTGTCCGGCGCGCTCCTGTTCTCTGTGGTTGGTGGTAAAATGAGCGAGGGGATCAATTTTTCTGATGATCTCGGCAGGTGTGTGGTTATGGTGGGGATGCCGTATCCCAATATCAAGTCTCCGGAGCTCCAAGAGAAGGTGGCCTATTTGGACAAAAACATGCCTCAGGTGGGAGGCCGCAGTCCCGGGAAGGCCCTGATTGAGAACCTCTGCATGAAGGCTGTGAACCAGTCGATCGgaagGGCTATCCGTCACCGCGGCGACTACGCCTGCATCATTCTCCTGGACTGCCGCTACGCCCGCCCTGCCACCCTGGCCAAGCTGCCCGACTGGATCAAGACCAGCGCCCAGGTGCAGGCCAGCTTTGGACCAGCTTTCGCCAGCATACGGAAGACGGCCACGCTGATTTTGTTCTGCAGCACTTGGCCATGTCTGCAAAATCCTAATGGCGTCTTTATTGACCTACAGTTCTTCATGGAGAAGAAGCGGAAGAATGGAGAGTAA

Function

GO: NA

KEGG:

id description
K11273 DDX11, CHL1, CTF1; chromosome transmission fidelity protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006818 True 2613 mRNA 0.54 25 21176548 21200739

Neighbor

gene id symbol gene type direction distance location
AMCG00006815 NA coding upstream 74397 21088361 ~ 21102151 (+)
AMCG00006809 miox,LOC102303880 coding upstream 258138 20908714 ~ 20918410 (+)
AMCG00006802 NA coding upstream 409487 20760427 ~ 20767061 (+)
AMCG00006803 NA coding upstream 425106 20721803 ~ 20751442 (+)
AMCG00006804 NA coding upstream 483935 20675866 ~ 20692613 (+)
AMCG00006822 NA coding downstream 142903 21343642 ~ 21354607 (+)
AMCG00006825 iqsec3,LOC106609634,LOC107689713,LOC105020425 coding downstream 165655 21366394 ~ 21385133 (+)
AMCG00006823 NA coding downstream 298294 21499033 ~ 21505375 (+)
AMCG00006824 NA coding downstream 324961 21525700 ~ 21554650 (+)
AMCG00006828 NA coding downstream 421938 21622677 ~ 21623130 (+)
G112573 NA non-coding upstream 119575 21056350 ~ 21056973 (+)
G112566 NA non-coding upstream 144564 21024279 ~ 21031984 (+)
G112564 NA non-coding upstream 153269 21022933 ~ 21023279 (+)
G112541 NA non-coding upstream 242330 20930234 ~ 20934218 (+)
G112535 NA non-coding upstream 253043 20919527 ~ 20923505 (+)
G112754 NA non-coding downstream 850939 22051678 ~ 22058486 (+)
G112755 NA non-coding downstream 858633 22059372 ~ 22059605 (+)
G112756 LOC108412581 non-coding downstream 862965 22063704 ~ 22064035 (+)
G112757 NA non-coding downstream 864856 22065595 ~ 22065804 (+)
G112758 NA non-coding downstream 867482 22068221 ~ 22068423 (+)
G112567 NA other upstream 127510 21048336 ~ 21049038 (+)
AMCG00006811 NA other upstream 231571 20937497 ~ 20944977 (+)
AMCG00006672 NA other upstream 7237073 13933666 ~ 13939475 (+)
G111197 NA other upstream 8133100 13011184 ~ 13043448 (+)
AMCG00006636 NA other upstream 8524733 12620062 ~ 12651815 (+)
AMCG00006820 NA other downstream 64514 21265253 ~ 21304878 (+)
AMCG00006829 NA other downstream 416893 21617632 ~ 21622508 (+)
AMCG00006865 hipk2 other downstream 2308410 23509149 ~ 23554741 (+)
AMCG00006878 ndufb2,LOC102790702 other downstream 2831350 24032089 ~ 24036112 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other downstream 3103957 24304696 ~ 24335916 (+)

Expression


Co-expression Network