AMCG00006823


Basic Information

Item Value
gene id AMCG00006823
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 21499033 ~ 21505375 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006823
CCCCCATTGGTCAGTCAGCAGCATGACGTATAGGGAAGTAAACAACAATCGGTGGAGAAACAGAAGCGGAAGATGCATTGCTATGGAGTGTATTAATGGCATAAAAAAAACCtacattgcttttattttttctttaaaaatcaatgaaGTGGCAAACAACGGCGTAACACCGACTTGTGCATCACTGAATACGAACCAGAGACCATGTTTGTCACAAGAGCAGCCGAAGAGGATGTCAGCGATGTCGAGGAAATGGACACCTCAGAGACCCAGTGGCACTGGTTTTACCTGGCAGACTGCGGAGTCTGGCACATGTTTGagGTTGGGAGTAACACACCATGCACTGTGACTAGTGACGATATTGAAAAGAACTACAGCAGGAATCAGCAAGGCGTTATGGAGTTCTCTACAGCCAAATACACATACCGCTTAGATTTTTCTGTGATGAAACAGACCAATACCAGCACGGGGAAGCAGAGGCCAATCAAGCGCGCTCTTTTTTCAGTGACTGGTTTCAGGTTCATCTGTGATAACCTTGCCTTGCCAGTTCCTTCACATTGGGAAATGATTAACACTGATGATCCCTACCAGCTCATCCCTTTGCATGGAAATACCTATGAATACAAAGAGGTCCTCCGACTCTTTGAAAGGACCTTGCTTGCACGCATTAAGGCAATTAAGAGAATTCAGAACTTAGACCTATGGGAATTCTTCtgcagGAAAAAAGCCCAGCTAAGAAAGATAAAACGAGTTCCAGATATCGAAGAAAGGATGCTTTTTCATGGCACCAGCCACGATATTGTGCAGGCGATATGTACCCACAACTTTGACTGGAGATTAAACGGTAGCCATGGCAATGTCTATGGAAAAGgAACTTACTTTGCAAGAGATGCCAAGTACTCCAGCAAGTTCTGCCACAACGGTGTAAATCATCACATGACTTTACAAACCCACGGAGTGGCGCCACTCATCTTTCAGAGCGAACCTTCATTCAAATCAATGTTCCTCGCTCGAGTGCTTGTTGGGGATTTCACTCTGGGAAATTCAACTTACTGCAGGCCGCCTTCCAAGGACAGAAGTCTCATGAACTTCTATGACAGCTGTGTGGATGATATTGCAAATCCAAAGATTTTTGTGATCTTTGATTGCAATCAAATCTATCCAGAGTACTTAAttgagtttttttaattgcaatgtGTGGTGCTGTGCAGGGCCACCTGGCGTCACAAATGTGTAAATTGCATTGGATGTTGCCCATGGAGTTCCACTCAGGAATATGTCTGAAGGAAACTAATTCATATGTTGGACAATCACCAAACTGAATGTGACTGAACTAAAAACATGCAAATTGGTTTACAGTAGCCTCTCTGTATTGCATGTAGTAATTACATTGTTACTTTTATAAAGTGCCTTACGGATACAACAAAAATGTAGtatttttcaaatctttatGTGAcaatcttttctgtttttctttagaTTAAATCTTCAGTTTAACACTACAAACAAATGAAGAATCTTAGCACAACTGCCTTGGTAAACCGAATAAAAAAGCAGtgatatttagaaattggtAGAATTAATTTGGGCGGATCTTCTAATTATATGTTAGTGTTTTGTTTAGAGTTATTACCTGGATTATGGTTACTGTTGTTTTGTGCCCAGGGATGGAGCTATATACATGGTGCTAAAGtcagcatttgtttatttgtttacataattaggaaataatcataatttagtGTCCACATTATATTTGGATCATTGTGGAGTAATGTGGgttagatttaaaatatatgttttagtaTGTTGGAGTAAGAGTTAGTTCAGCCTCCTGGTTCAGTACGGTTAGGGTTGTAAAGGTATAGTCTTAGTGTTAAGTGGAAACCAGAAATCAGGCTGTTTACtagattaatttatgttttaagagTTTAATCAAATGCCCTTCTCAAGCATTTAAGAAAAGTTCCCATtgtgctgaaatgaaaaatgattatATCAAGATGTGGAAAATGCTGGAAACAGTGCAGTCAGAGCTAATCAGTCcatatttaagttaaatgtctCATCATCAATAGTGGTAGAAGGCTTTGTAAGTAAGTCCCCTCTGTTCCTTATCTgccacacacaaatacaataattttatttttcatttgttaaacTGTTACACCACAAGGTGGAGACATACCACAATGAAAATCACTGGTCTGTAAACTGAAAGTAATAAAAGAAACAAGAGGAAAGAATTAGGCTTTcaagtaaaaaactaaaacaaaaaaactatatgtgtgattatattattttaaatactgaaacagtgtttaaaatgtattagttcCTTCTGGCAATGATAACCAAACTTGAGTCATGCAGATATCTATGGTAAAGTTTTATagtactttgttttaaaatgcagatccTTTTAATTGCCCTACAAGTCCAGttaaaacagagaaagaaagaaaaaaaaatgactggaAACATTTGAGTAAAAgattatgtaattgttttctttgcaggCCTATTCAGTACTTTTTTTACCAAAACCAGGATCAATTAAATTGAT

Function

GO: NA

KEGG:

id description
K15259 PARP7S; poly [ADP-ribose] polymerase 7/11/12/13

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006823 True 2566 mRNA 0.38 8 21499033 21505375

Neighbor

gene id symbol gene type direction distance location
AMCG00006825 iqsec3,LOC106609634,LOC107689713,LOC105020425 coding upstream 113900 21366394 ~ 21385133 (+)
AMCG00006822 NA coding upstream 144426 21343642 ~ 21354607 (+)
AMCG00006818 NA coding upstream 298294 21176548 ~ 21200739 (+)
AMCG00006815 NA coding upstream 396882 21088361 ~ 21102151 (+)
AMCG00006809 miox,LOC102303880 coding upstream 580623 20908714 ~ 20918410 (+)
AMCG00006824 NA coding downstream 20325 21525700 ~ 21554650 (+)
AMCG00006828 NA coding downstream 117302 21622677 ~ 21623130 (+)
AMCG00006827 LOC107593980,LOC107694254,LOC107720401 coding downstream 164001 21669376 ~ 21682306 (+)
AMCG00006833 tspan9a,LOC107559293,LOC107738414,LOC107084745,LOC107672591,LOC107587031,LOC103380054 coding downstream 284505 21789880 ~ 21794405 (+)
AMCG00006830 LOC105018129,LOC106573177,LOC106561385,LOC107587031,LOC107738414 coding downstream 330500 21835875 ~ 21853017 (+)
G112573 NA non-coding upstream 442060 21056350 ~ 21056973 (+)
G112566 NA non-coding upstream 467049 21024279 ~ 21031984 (+)
G112564 NA non-coding upstream 475754 21022933 ~ 21023279 (+)
G112541 NA non-coding upstream 564815 20930234 ~ 20934218 (+)
G112535 NA non-coding upstream 575528 20919527 ~ 20923505 (+)
G112754 NA non-coding downstream 546303 22051678 ~ 22058486 (+)
G112755 NA non-coding downstream 553997 22059372 ~ 22059605 (+)
G112756 LOC108412581 non-coding downstream 558329 22063704 ~ 22064035 (+)
G112757 NA non-coding downstream 560220 22065595 ~ 22065804 (+)
G112758 NA non-coding downstream 562846 22068221 ~ 22068423 (+)
AMCG00006820 NA other upstream 194155 21265253 ~ 21304878 (+)
G112600 NA other upstream 295832 21142865 ~ 21203201 (+)
G112567 NA other upstream 449995 21048336 ~ 21049038 (+)
AMCG00006811 NA other upstream 554056 20937497 ~ 20944977 (+)
AMCG00006672 NA other upstream 7559558 13933666 ~ 13939475 (+)
AMCG00006829 NA other downstream 112257 21617632 ~ 21622508 (+)
AMCG00006865 hipk2 other downstream 2003774 23509149 ~ 23554741 (+)
AMCG00006878 ndufb2,LOC102790702 other downstream 2526714 24032089 ~ 24036112 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other downstream 2799321 24304696 ~ 24335916 (+)
AMCG00006893 ndufa9,LOC107572617,LOC107686627,LOC107732787 other downstream 3003628 24509003 ~ 24587119 (+)

Expression


Co-expression Network