AMCG00006824


Basic Information

Item Value
gene id AMCG00006824
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 21525700 ~ 21554650 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006824
AGGCTTCGTTGACTAATTAAAGAGGCTGTTGCTAAGAGATGACGAGCACCATAGTCTGGCGCTTCTGATGTGCTTACACCGGAACCTGCAGCGCTCAGGGGGGTTCTGCCACCAAACTGTGACCCCTTGAAAGGAAGAACTGAACAAAGTAGCATGGCAGCTTTTTCAAGCACCTGTGCCGCCAAAGTGGCCCACAGCAGCCGCACAAAGGAGGACGCCTCGTCGTCCTTAAGCACAGACGCCCGGGACTGGAGCGGCGGCGACAGCCTGGAGACCGGCCGGCTCACCATGTTGGAGAAGGCGCACGAGTTTTTCCAGACCTGTGACATCGAGGGCAAGGGCTTCATCAATCGAAGAGATATGCAGaggCTCCATGGTGAGTTGCCCCTCAGCGCAGATGAACTAGAGAATGTCTTCGACACGCTGGACGCAGATGGGAATGGTTACCTCACCTTGGAAGAGTTCACAACAGGGTTCAGCGAGTTTCTATTTGGCCGGAGGATCTCTGTGAGTGAGGTGGTGGAGGAGCCAGGCCAGTGCCAGAGCCAGCCGGAGAGCTTCTACCAGAGCCAGTGGGAGGAGCGGCTGGCTGGCAGCGAGGATGACGAGGAGAGGCATTTCTGCATGCTCATCGACAGCCTGGGAGCCAGCAATATCTTTGAAGAgcCCAGCGAAGTCCGTAGCCTCTGGGCCCAGCTGAGGCGAGATGAGCCCCAACTTCTGTCCAATTTTGAGGAGTTCTTGGCCAGAGTCACCTTCCAGATAAAGGAGGCCAACCAGGAGAAGAGCGAGATGGAGAGTGCACTCAAGAGAAAGGCAGCTACACACGATGATGAAATCCAGCGACTGTACGAAGAAATGGAGCAACAGATTAAGAATGAGAAGGAACGAATACTTTTGCAGGATTCAGAGCGCTTTCTCTCCCGCAGCCAGGACCTGGAGCAGCAACTGACGAGCAAGGAGGTGGAGCTGGAGCAGCTATGCCAGAAGCAGAGGAGGCTGGAGAGACAGTGCTTGGACCTGCACAGCGAGCAGCACGAGACCAAGGTGGAGAACGTGAAGTTGAAGCAAACCAACGAGGAGCTGGGGAGGGAGCTGGAGCGCACCTGCCAAGAGCTGGCCCTGGCCCAGGAGCAGCTCAACCTCCTGCAGGAGCAGGCCTCCCGACTGCATGAGGAGAGGGAGATGGAGCTGTATAGGGTTACAGAAGGACTACAAAGAGAGCGAGCGAGCCTTCTGAAACAGCTTGACCTCCTGAGggaaatgaacaaacatttaCGAGATGAGCGAGATATGTGTTATCAACCAAAGAATTCAGTCAAAAACTCTTCCTGGAACCAGAGATCTGGATCAATTGTTGGTAAATACATGGAAAGAAAAACGTCCATTAAAAGCAGTGATGATGAAGACGACCTTCTCTCCTACTCCAAGAGGAGGAACTCGGCCGGTCTGAATGGGTTCTGTCAACTGGGTAAGGAGAGCGAAGGGGAAAGCAAGGGGATGAAGAAGCGGCAACTTCAGCGGATCATTTCCATTGAGGAGGATCACCTGCCCCAGTTCCTCCATGTGGAGTATGAGGCTCAGCTGAACGAGTGGACTGAGGAAGATGACGACGTGGAGGAGGATCTGACCCGGAGAAAGCAGGATCAGAGGTCTTTAGAAGCGGCCAAAGCCCCCATTTCTGAAGTTCCTGCTGTCCCATTGACTTCAGAGGAGACCCTGTCTCAGGAGAGCGATCAGACCTCCAGCCACATAGCTCCTTCCTCACCACGCGGCCAGCCTGAGGAGAGCATGGTCTCCACTCCTGATCGCTTGTTTAAGATTGTCCTCGTGGGAAACTCCAGTGTGGGGAAGACCTCCCTCCTAAGACGCTTTTGTGATGACTGCTTTTACCCCGGCACATCTGCCACTGTAGGGATCGACTACAGTGTTAAAACAGTAACAGTAGAAAACAGCCAGGTGGCGCTGCAGATGTGGGACACAGCTGGACAGGAAAGGTATCGCAGTATTACAAAGCAGTTCTTCAGAAAGGCTGATGGAGTTATTGTGATGTATGACATCACCTCTGAACAGACGTTTACATCTGTACGCCACTGGCTGACGAGTGTCCATGAAGGCGCTGGAGACGATATTCCCATCATGCTGCTTGGGAACAAAACTGACAAGGAGAGTGAAAGAGAAGTCCAGATGAAAGTGGGGGAGAAATTAGCAAAGGATTCCCAGCTGATTTTCTCAGAGTGCAGTGCCTTCTCGGGTCACAATGTCACGGAGTTGATGCTTCATTTGGCAAAAATTTTAAAGGAACaagaagacaaagacaaagagaaaaCCATTCAACTAGTGGACGACTCTTCAAAGAAGAAGTCCTGCTGCTCGCGACAGTAGACGCCCAGGCAGCGTGGAAGAGATCTGCCGTTAACATCCAAAGGTGCATTCATACAGGTGTTTTTTCACTTGTCACAAGTATTTTTCTTGTCTATTGTTGTACGACTTGATACTGAGCAATCTTTGGAAAACACTCCTTATGTGTATCATAGTAGGTTTTCACTTGCTGATTTTAAATCTCTTTCCAGAAGCATTGGTTGGCAATGTTTTTAGAAAcgtctgtaaaatgttttatcttcAAAGAAACATGAAGCTGATGAAATTAGAAGCACAGGTAAATATTCAATGTAAGAGTTGTCTTTCCCAGCTCtaatgtgtattaatttaaaatcaaatttatGCTTagtcaaacacaatattgtataaataatagCACGTTTATGAAaggttgttttaatttatttgactaCTGCTAATAACACCACacaactttatttaaatcatgttaatattaaattgtcttttaaaaactgaGGGCATGACACTTTTGCCTGGccacaattgttttttatatgtgatTAAATGTATCTAGAGTTTGTACTTTCAACCACTTTGCAGCTTTCTTTCAGATGtaaaaaaagctttataatgAGAGACCAGTTCACAGAAGAGTCATGACTAGAAATGTTAATGTATCtgctttgtaaaaacaaaaactcgaTGTCACTAAGAGCCTTACAGaatatgtttgtaaaatatgaattgtaCATCTTCTTGAATTAGTAGTTAATGATTACTAGGAAAAAGAGTACGTAGAAAgtgtctgtatttgtgtttcctgttttatttctaCTATGTAAGTTATACCATGGTTGTACCAAAATGTGGGATTTTCTAGGATTTAACTGTATAACCGTTACATCACTCCATGCATTTGAAATCGAATTGGCCATTTAGTCCTACTCTTGGGTTAACAATGGATTGTCATAGAGTAGGTTTGGTCATTTTGTGTGTACAATCTGAATTGGAAATCCCATATAAATGCATACAGGTTGTGTAAAACTCAAGTTCCAGTTGTTTGTTGTGTGATGTGTTCTTTGGAATCCCATGATTGTCGTACCATTCAAAAAGTAGCCTTTCACAGCAAGTATTTGTATACCAGATGTATTTAGTTGACTTAGTCATTCACTTCAGCATGGCATAAATCAATGCGATTTGGTTCTGTCTGTTTTTGGTCTTTGACTTTCCCATGTTAGACTGATTGCACTTTCCAAACATCATCGTTTTTGTAGCTAGACCTCTTTTTATGAAGTAAAGAGGGAGTTTATTTTAGGCACCACACTGAAAAGTAGGCATCCTGCAACGTGTTGAGCATCCATGTGATTCAGAGTTTGTCAAAGAGAAACCAGTGTTGGGGTGTGAATAGAAAAACAAGTCTCCGTGTTAGGGTTTACTTGCAGAGAGGACGAATGTATTCCCATTTTCACTCAAAAACCTCTCCCTGCTCACAGGTTGGCAATGAAAATCAAAAGACAATCTTTTCCCCATTCCTCACTCTTTGAATGTCtgtagcatttttttatttatttgtatgtttgtttgttcgtcGGTATGTCTGATTGGAAAATGtcataatgtaaaaaatgtacttCCTTGATGGACCTGAAAGACGAGCCAGTGAAAGTCTGGTCTGTGGCCGTGATGTTATGTGATCGCACAAGAAGGACACGCGCGGTTTTCAGAGCAGGTTGTCCCCCGCTCAGCACAGCACTCCTGTAGGAGACACTGCTGACAATCATGTCAATCCTGTTTGTAAGTCAAAATGATGATTACAATGTACTGCACTATAAACATACAAGCACATTGTTCTATAATTGAAA

Function

GO: NA

KEGG:

id description
K17199 RASEF, RAB45; Ras and EF-hand domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006824 True 4205 mRNA 0.45 17 21525700 21554650

Neighbor

gene id symbol gene type direction distance location
AMCG00006823 NA coding upstream 20325 21499033 ~ 21505375 (+)
AMCG00006825 iqsec3,LOC106609634,LOC107689713,LOC105020425 coding upstream 140567 21366394 ~ 21385133 (+)
AMCG00006822 NA coding upstream 171093 21343642 ~ 21354607 (+)
AMCG00006818 NA coding upstream 324961 21176548 ~ 21200739 (+)
AMCG00006815 NA coding upstream 423549 21088361 ~ 21102151 (+)
AMCG00006828 NA coding downstream 68027 21622677 ~ 21623130 (+)
AMCG00006827 LOC107593980,LOC107694254,LOC107720401 coding downstream 114726 21669376 ~ 21682306 (+)
AMCG00006833 tspan9a,LOC107559293,LOC107738414,LOC107084745,LOC107672591,LOC107587031,LOC103380054 coding downstream 235230 21789880 ~ 21794405 (+)
AMCG00006830 LOC105018129,LOC106573177,LOC106561385,LOC107587031,LOC107738414 coding downstream 281225 21835875 ~ 21853017 (+)
AMCG00006831 LOC100694777,LOC104940279,LOC101482493,LOC106573176 coding downstream 301251 21855901 ~ 21868236 (+)
G112573 NA non-coding upstream 468727 21056350 ~ 21056973 (+)
G112566 NA non-coding upstream 493716 21024279 ~ 21031984 (+)
G112564 NA non-coding upstream 502421 21022933 ~ 21023279 (+)
G112541 NA non-coding upstream 591482 20930234 ~ 20934218 (+)
G112535 NA non-coding upstream 602195 20919527 ~ 20923505 (+)
G112754 NA non-coding downstream 497028 22051678 ~ 22058486 (+)
G112755 NA non-coding downstream 504722 22059372 ~ 22059605 (+)
G112756 LOC108412581 non-coding downstream 509054 22063704 ~ 22064035 (+)
G112757 NA non-coding downstream 510945 22065595 ~ 22065804 (+)
G112758 NA non-coding downstream 513571 22068221 ~ 22068423 (+)
AMCG00006820 NA other upstream 220822 21265253 ~ 21304878 (+)
G112600 NA other upstream 322499 21142865 ~ 21203201 (+)
G112567 NA other upstream 476662 21048336 ~ 21049038 (+)
AMCG00006811 NA other upstream 580723 20937497 ~ 20944977 (+)
AMCG00006672 NA other upstream 7586225 13933666 ~ 13939475 (+)
AMCG00006829 NA other downstream 62982 21617632 ~ 21622508 (+)
AMCG00006865 hipk2 other downstream 1954499 23509149 ~ 23554741 (+)
AMCG00006878 ndufb2,LOC102790702 other downstream 2477439 24032089 ~ 24036112 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other downstream 2750046 24304696 ~ 24335916 (+)
AMCG00006893 ndufa9,LOC107572617,LOC107686627,LOC107732787 other downstream 2954353 24509003 ~ 24587119 (+)

Expression


Co-expression Network