AMCG00006825 (iqsec3,LOC106609634,LOC107689713,LOC105020425)


Basic Information

Item Value
gene id AMCG00006825
gene name iqsec3,LOC106609634,LOC107689713,LOC105020425
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 21366394 ~ 21385133 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006825
CTGCGTGGTGGACGAGATGGACTTCTCCGGGATGGAACTGGACGAGGCCCTCAGAAAGTTTCAGGCTCATATCCGAGTTCAAGGGGAGGCCCAGAAAGTGGAGAGGCTCATTGAAGCATTCAGCCAGCGCTATTGCATGTGTAATCCAGACGTGGTGCAGCAGTTCCACAACCCCGATACCATCTTCATCCTGGCCTTTGCCATCATCCTCCTCAACACAGACATGTACAGCCCAAATATCAAGCCTGACCGCAAGATGATGCTGGAAGACTTCATTCGCAACCTGCGTGGAGTGGACGATGGGGCCGATATCCCTCGAGAGATGGTGGTTGGCATCTATGAGCGAATCCAGCAGAGAGAGCTGCGCTCTAATGAAGACCACGTCACGTATGTCACCAAGGTGGAGCAGTCCATCGTTGGCATGAAAACGGTGCTGTCCGTGCCTCACAGGAGGCTGGTGTGCTGTAGCCGGCTTTTCGAGGTCACAGACGTCAATAAGGCCCAGAAGCAGGCAGCCCACCAGAGAGAAGTGTTCCTGTTCAACGACTTGCTCGTGAGTCAAGTTGATCAAGCCTCTGGCGGTCAAACCCATTCAGAATTGTTTTCCACTCTCATCCGCCACGTATGCTTTGCAGATTACCCCCATGGGATCACGATCGTCTCTCCTTTCTCGGGCTCGGAGAAAAAGCAGGTGCTGAACTTCTGTGCCCAGAGCGCGGAGGAGCTGCTCAAGTTCGTGGAAGACCTGAAGGAGTCGATCGCAGAGGTGTCTGAGATGGAGCAGATCCGCATCGATTGTGAGTACCTTCCTTTTCAACACTGCAGCCTCGGTGGCAGAAAGTGTAATGGGAATGCGGTGGAAAACTATGGTTTAAAGTTAACAGTGTGTTTGAGAACATTCCAACCAACATTAATAGCCATGATTAACGCAGCTAGTGAGCAGTTTTACCTCAAACAGCTGTGTGTC

Function

symbol description
iqsec3 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in several processes, including actin cytoskeleton organization; activation of GTPase activity; and regulation of small GTPase mediated signal transduction. Located in cytosol and nucleoplasm.

NR:

description
PREDICTED: IQ motif and SEC7 domain-containing protein 3-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006825 True 967 mRNA 0.52 5 21366394 21385133

Neighbor

gene id symbol gene type direction distance location
AMCG00006822 NA coding upstream 11787 21343642 ~ 21354607 (+)
AMCG00006818 NA coding upstream 165655 21176548 ~ 21200739 (+)
AMCG00006815 NA coding upstream 264243 21088361 ~ 21102151 (+)
AMCG00006809 miox,LOC102303880 coding upstream 447984 20908714 ~ 20918410 (+)
AMCG00006802 NA coding upstream 599333 20760427 ~ 20767061 (+)
AMCG00006823 NA coding downstream 113900 21499033 ~ 21505375 (+)
AMCG00006824 NA coding downstream 140567 21525700 ~ 21554650 (+)
AMCG00006828 NA coding downstream 237544 21622677 ~ 21623130 (+)
AMCG00006827 LOC107593980,LOC107694254,LOC107720401 coding downstream 284243 21669376 ~ 21682306 (+)
AMCG00006833 tspan9a,LOC107559293,LOC107738414,LOC107084745,LOC107672591,LOC107587031,LOC103380054 coding downstream 404747 21789880 ~ 21794405 (+)
G112573 NA non-coding upstream 309421 21056350 ~ 21056973 (+)
G112566 NA non-coding upstream 334410 21024279 ~ 21031984 (+)
G112564 NA non-coding upstream 343115 21022933 ~ 21023279 (+)
G112541 NA non-coding upstream 432176 20930234 ~ 20934218 (+)
G112535 NA non-coding upstream 442889 20919527 ~ 20923505 (+)
G112754 NA non-coding downstream 666545 22051678 ~ 22058486 (+)
G112755 NA non-coding downstream 674239 22059372 ~ 22059605 (+)
G112756 LOC108412581 non-coding downstream 678571 22063704 ~ 22064035 (+)
G112757 NA non-coding downstream 680462 22065595 ~ 22065804 (+)
G112758 NA non-coding downstream 683088 22068221 ~ 22068423 (+)
AMCG00006820 NA other upstream 61516 21265253 ~ 21304878 (+)
G112600 NA other upstream 163193 21142865 ~ 21203201 (+)
G112567 NA other upstream 317356 21048336 ~ 21049038 (+)
AMCG00006811 NA other upstream 421417 20937497 ~ 20944977 (+)
AMCG00006672 NA other upstream 7426919 13933666 ~ 13939475 (+)
AMCG00006829 NA other downstream 232499 21617632 ~ 21622508 (+)
AMCG00006865 hipk2 other downstream 2124016 23509149 ~ 23554741 (+)
AMCG00006878 ndufb2,LOC102790702 other downstream 2646956 24032089 ~ 24036112 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other downstream 2919563 24304696 ~ 24335916 (+)
AMCG00006893 ndufa9,LOC107572617,LOC107686627,LOC107732787 other downstream 3123870 24509003 ~ 24587119 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000021_05748401_05769219 NA coding CI01000021 null 5748094 ~ 5769219 (+)