AMCG00006827 (LOC107593980,LOC107694254,LOC107720401)


Basic Information

Item Value
gene id AMCG00006827
gene name LOC107593980,LOC107694254,LOC107720401
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 21669376 ~ 21682306 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006827
tatttctcCTGTCTCCTTTTAATATTCCTGATTGAGCTTGTGGCCGGCGTCCTGGCTTACGTTTACTACCAAAGGCTTAGCGACGAACTGAAGCAACATCTCAACCAGACCATGACAGAGAACTACGCGCAGCCTGGAAAGAATCTCATCACGCACGCCGTTGACAGACTCCAGCAAGATTTCAAATGCTGTGGCAGTAACAATGCATCTGACTGGCAGCACAGTGTGTACATCAACTCTGCCGAAGCAGGGACTCGAGTGGTCCCAGACAGCTGCTGTAAAACAATCACACCCAGCTGTGGAGGGAGAGACCATCCATCCAACATCTACAAAGTGGAGggAGGTTGCATCACCAAGCTGGAGCAGTTTCTGGCTGATCATCTACTTATTATAGGAGCGGTGGGAATTGGAGTGGCATGTCTCCAG

Function

NR:

description
PREDICTED: tetraspanin-11-like isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006827 True 426 mRNA 0.50 4 21669376 21682306

Neighbor

gene id symbol gene type direction distance location
AMCG00006828 NA coding upstream 46246 21622677 ~ 21623130 (+)
AMCG00006824 NA coding upstream 114726 21525700 ~ 21554650 (+)
AMCG00006823 NA coding upstream 164001 21499033 ~ 21505375 (+)
AMCG00006825 iqsec3,LOC106609634,LOC107689713,LOC105020425 coding upstream 284243 21366394 ~ 21385133 (+)
AMCG00006822 NA coding upstream 314769 21343642 ~ 21354607 (+)
AMCG00006833 tspan9a,LOC107559293,LOC107738414,LOC107084745,LOC107672591,LOC107587031,LOC103380054 coding downstream 107574 21789880 ~ 21794405 (+)
AMCG00006830 LOC105018129,LOC106573177,LOC106561385,LOC107587031,LOC107738414 coding downstream 153569 21835875 ~ 21853017 (+)
AMCG00006831 LOC100694777,LOC104940279,LOC101482493,LOC106573176 coding downstream 173595 21855901 ~ 21868236 (+)
AMCG00006836 LOC108264267,LOC107559327,LOC108414616 coding downstream 255069 21937375 ~ 21994328 (+)
AMCG00006834 NA coding downstream 313919 21996225 ~ 21999726 (+)
G112573 NA non-coding upstream 612403 21056350 ~ 21056973 (+)
G112566 NA non-coding upstream 637392 21024279 ~ 21031984 (+)
G112564 NA non-coding upstream 646097 21022933 ~ 21023279 (+)
G112541 NA non-coding upstream 735158 20930234 ~ 20934218 (+)
G112535 NA non-coding upstream 745871 20919527 ~ 20923505 (+)
G112754 NA non-coding downstream 369372 22051678 ~ 22058486 (+)
G112755 NA non-coding downstream 377066 22059372 ~ 22059605 (+)
G112756 LOC108412581 non-coding downstream 381398 22063704 ~ 22064035 (+)
G112757 NA non-coding downstream 383289 22065595 ~ 22065804 (+)
G112758 NA non-coding downstream 385915 22068221 ~ 22068423 (+)
AMCG00006829 NA other upstream 46868 21617632 ~ 21622508 (+)
AMCG00006820 NA other upstream 364498 21265253 ~ 21304878 (+)
G112600 NA other upstream 466175 21142865 ~ 21203201 (+)
G112567 NA other upstream 620338 21048336 ~ 21049038 (+)
AMCG00006811 NA other upstream 724399 20937497 ~ 20944977 (+)
AMCG00006865 hipk2 other downstream 1826843 23509149 ~ 23554741 (+)
AMCG00006878 ndufb2,LOC102790702 other downstream 2349783 24032089 ~ 24036112 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other downstream 2622390 24304696 ~ 24335916 (+)
AMCG00006893 ndufa9,LOC107572617,LOC107686627,LOC107732787 other downstream 2826697 24509003 ~ 24587119 (+)
G113369 LOC108442871 other downstream 3935761 25618067 ~ 25618445 (+)

Expression


Co-expression Network