AMCG00006830 (LOC105018129,LOC106573177,LOC106561385,LOC107587031,LOC107738414)


Basic Information

Item Value
gene id AMCG00006830
gene name LOC105018129,LOC106573177,LOC106561385,LOC107587031,LOC107738414
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 21835875 ~ 21853017 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006830
TTGTCTGTTCCTCTCTTGCAGTTGTGCGGCTGTGGTCTGCTGGGAGTGGGCATATGGCTGTCGGTGTCCCAGGGGAGTTTCGCCACCTTCTCCCCCTCCTTCCCGTCCCTTTCTGCGGCTAACCTGGTCATCGCCATCGGCTCCATCATCATGGTGACCGGATTCCTGGGGTGCCTGggggccatcaaggaaaacaagTGCCTCCTATTGAGTtttttcattgtcTTGCTGATTATTCTCCTGGCAGAGTTGATACTACTCATTCTGTTCTTTGTTTATATGGATAAGGTAAGCGAGAACGCGAAGAAGGACTTGAAAGACGGACTTGCGCTGTACAACACAGACAACAATGTCGGTCTGAAAAACGCCTGGAACATCATTCAGGCCGAGTGGAAGTGCTGTGGAGTGATGGGGTACACTGACTGGTACGAAGCCCTGAAAGAGCCCGTGGTGCCGGACCGCTGCTGCCAAGAGCACTACCAAGACTGCGGGCGAAACGCCACCAACATGTTCTGGAAGCAGGGTTGCTATGGGAAGGTGGAAGAATGGTTGGATGATAACAAACACCTCTTGGGCACCATTGGGATGTGCATCTTAGTAATACAGatcCTTGGCATGGCCTTCTCCATGACTCTGTTCCAGCAGATCCACAGAACTGGTAAAAAGTACGATGCCTAGCACCGCCACCAGCAGAGGTATCCTGGCTCACCGTCAGTCTCCAGAGGACAACCCAGAATAGCCCCGTTCTTTCCCCGCAGCACTGGCCAGGCACCAAAAGGCACCCCCACATTTACACAGACTACAGATCTACTCCATcagaattacaattaaaaaaaattgcatataCAGTTTATTTGCCAAAGAGTTGAACTAAAATCAGATCGGAAAAGAGAAGAAGCATCGACTATTGACAATGAACGCTATGTGGCTATCTttcctccttttgtttttgttgtttttttcttctaactaacagtttttaaagaacgcaagaaaggaaaaaaaaaaagaatgcgtTGCTTTACTAATACACTTCTGATCTGCACATGTAAAGCAAAGGGAGGCTCTGAAACACAACAGCTGTGTCGAACAAGTCTCTGGACGTTGGAAGAGCCCTGTTATTTCCAATCTTTGGTAAACAACCGAAGGCTAAAATTTTGCATGCTACAGATTTCTTTTCTACTCGATGGataactttgtattttaaagttaaaataagatatttttttGGATACAATCCTAAgaactttttttagttttaatgtacttttcttTCATGCTCCTTTGCAATatatggatgtttttgttttattttattatttgttttgggcGGGGGCGGgatttggttgttttgttcttaggtttgttttgttttttatgattcATAGAGCGGTCTATAGGATTGAAGACATTACTGTAGGTCACAGAGCTAAATCGTCGTGTGGAAAAATAACAGCCTTTTGTTTCAGCCCTGAATGTGCTCTGTTAAAGCGGGATATTCCGACGCCTGGTTTGTCTTGATAAAACACTTCACAGGTCAATTAAGTGTCCACAACAAAGAATTGTTACTTGTCGTTAATAATGACTTTCCTACTCCAGCTTTCACACGTGTAATATACACACTCTTCATAATAACTCTATCATCATAATTGCTGTCACCTCACCAGCCCTgagttaaaatatattatcctTATTcctataattaaaatgctcacACTAAGCTTGCATTGAAATCacaaatatgaagaaaatgATCATCTTGTGTACTGTATCGATCGGGATACAGTACAGTGCTTGCTGTGGTTGGTTTCAGAGTCGTAGACGACAGATGGGAAGTAGTGACTCAACAAATACCTTTTTGAACGGGAAACCTGGTTGCCTTCCAAGCAGAATTAACAAAACCTTCTAGAAGccatacaaaaatatgttttcatttgagtGGGGGAACGCAGAGTTGAAGCATAAGTCTGGCAAGATTGATCATTGGTGTTGTACAGCCTGCAGtgtttcttccctttttttttgcacacttcagcaatctgtgttttaatttcaggtCCAGGTTGTTCTTTCCGcatcacacacagaaaagcCGCAGAGCTTTTATTACAGTGCACATTTCCACAGACATTCCTGCTAGATGACTTGAAGATATACCTCTAGTTTTAATGCTGCttaaatttgaagaaaaaaaatcttattcaGTCACAAAGGGTGGGAAAGGGAGGTTGTTCAGTTAGGGAGTTGCATCACACTCAAGTACAGAAGCTGTTGGGAAAATTGGCTAGTTGTTTACTTCGAAAACGGGGAAATTGGGACCAGAAGTGAATTGAGTTCTGAATATCATCCTCCGAatgcagaaacattttgaaataattgtttGGGTGGCGGTGGAGTGCTGGGTTGGGCGGGCAGGGGGTACTGTGGATGATGAATTGAGGAACTCTGCCACTGAGCATGTTTGCTGCTATGTGGGAAGTCTGTAGCTAAGAAAGGCAATACGACAtgatggaaaaaggaaaaatgatgTCCATCGTTCACGCTGTTTTgacacactgcagtgttttacTCCATTCTTGTCTGGTCAATCTTGCTGGAAGATGTGTAAcggattgaaaaaaaaaaaaaagaaaacatgcatgatCTTCTTTTGGGTGAAGTTTGTATGACAATACTTAGCGGCAAGGGGAGCCGACGCTGTGACACCATCACGCCTTTGCAGGGGGCCGACATCTGTGTTTTGTCACCTTAGCCTTTGCGAGCGGATTGCGTCCCGTCTCGAGAACGCACCGGTCGTTTCACGTCTGAATAACGATGAAGACAGTTTCGGAAAGTGCTGAGCTGTTGCCAAAATCCaggttttatttagaaatggTGCTTTTCTCAGCTGCCTCTGATGCCCCCAGGAGACGTAACAGTTGCGgcagacttttgttttttcacgCCCTGGCAGGTGCCATTTTCCAAGTAATTAAACATCCCCCCACTCAATGGTGAAGCATAAGACTgatttaatgtttcaatttgGACTTGCCGTGTGTCTGGAAATGAAGTCTACCATTTAATTTCAGCCCCTCAACCAAAGGGGCAGCACTTGGTTTTCCCCGCAAAATTATATGCTGTCCCTCACTTGAACACAACTGTTATATATGAAGTGGTGTGTGTAAGTTCGCTACAGCTTTGCCACCATGCTGGGCTGAAAGAGCAGGGCGGTCTCTCGCTGATTTATATGAAGCATTTGAACTGAAGAGAGAGCAGTTACATtgatatatttctatatatggCCTGATCTGAGGTTTTGAAGATTGCAAGGTGCATTTTGTTAACAATCTAAAATGCTTCAATTACTGTATTCAAGGTTTGAAATTACTATGCCTGGAGTGACTAATATACGTTCATCTTGTCAGTCCCAAAATGGTCAAAAGCAGCCTTAACTGTGTAGAAAATCTTAACATACAGGTCCTAAATACTTCAGCTTCCTTTGTCAAACCTCGTATACTGTATTTCAGCGGATAAAATACATAGAGATTGATTTTTAAGCTCTATTAGGCTGTGATTTAGAATCATGTTCTTCAGAAGAACGTGTCTTTGACGgagtgcattttatttacagtgttgtTCATGTGTGCAGTCTGACAGGTATTTGTCACCGGATCCCATCCTTTCATGTTTTTGCTACAGCAATACTCCATGCTTGATTGAACCAAAATTGAATTGTGTACAAAGTGTATGTAAACGCTCAAAAGTATCTGTCAGTTCAACACAGCTCTCCGGTTTGTTTGATTGCCtaggaagacagagagagtgtcACAATTTATATTAGTTCCTTGGAAATAATTAGGAGAGGTGACATGAATCAGAAGTACCTCACTATGGAAACCTCTGAGTTCAAGCTGACAACCTTTCTGtcttaaacacatttgaaatgacaGGCATTTGGGGAAACCTATGAGCTGAAGTGTGCACAGGGCAGATCCAATTACAATATACTACTTTTGCTAGTGGCTGTAatccaagaaagaaaaatacatttaaaaggtgaactgtgctttgtttttgttgttttccttacattttgaactattgtgtaaattgtaagcTGATCAGTGTTAAACTGTACAGGATTTCTGTACAAAAACCAACCAGTGCTGAGTCACATATGCTTCCCTACATGACcaacacatttttgtgtattttcagtgtaattTTTAAAAGAAGCTGAGCTGGGTTAACCAGCATTATGTGATGCAAATCCTATGGAATAATCTTGTCTTTTTAATGACTGTGGTAATTTGAGAAAATTGACCTTGAACTCTGAAATCAGATCAGTCTTTTCTTACTAGGTCTTCAACATCATTGGCATCTTGCAGTATTTGTGATCTGTAACCAGAAAGCAGGAGAGCTTTTGTTTTCTAGTCCTAGTCATGGTAGGAATTGGATTTTCACCAATATGTTGGCAACCAGCAGACTTTTAACAGTCCATGTGGGttacctttttatatatacctGTGCAGGATGGACTGATCTCAGGCAAGTTATATGTAACCGCCAAAGACAATAaaggaatgaaaacattttttttttcttttgtatttttttattccagttgTAGTATaactattcaaatgtttaaaggagggacatttttttatatatattttaaatctgcactAGATGcagtttttatgcatttaacaaaagacacaaatgatGTTCTTAAAATTTCTCACTTTATTACGTAAATactgccactgaaaaacagcaaaaatacaataatgctCTAGATCCTGTATGGGGCAGGGGATGAGggaggagaaaaacaagaatgcCTCCCacctttatttttaacaagGTGTTGCAAGCCTTTAGCAATACAACAAAGTCAAGCTCTTGGTCCTGTTACGATGGGCGTTGCCATGAATACTCTGatactgtattatttcacaAGTCTTGTCCCGTTTGTTGTTTGTAAATGAAATGCACTCTGAACATCTCTGAGAGTTGGTATAAtactttattctttttttgtcaAATGAAAAGCTTGTCGTTAAAAACCCATTCATTGCCTTTCAAGTAATGTTGTGAAGAAATGAATGCTGtcgattattttgttttcattttcctgttgttaatgttgttgACTTCcttttcaataatatatttttaattgtatttaatcatgCATAACCAGCAACAACATGTGGGCTTGTGACTGAATACTGGCGAGACTCTTTGAGCCCCCGGCTTTGGCTGTCTCCGCCAAGGGGTGCAACGAAAAAAGAGCGGTATCTTCTTCAAAAGCCCCAGCCCTCATGTGAACGTTAttgtcattgtgttttcatCAGGAGTGCAGAAAACAAGAGgactgcttgtttttgttttttttcttatggtgtttaaaggaatacaaaaattaataaatgaatataaagaagggggaaaacataactttctaaataaaataggAAAGAAGCATTGTGTTGTAGTATTTTTACCATTGGAAGTGCGCGCAGGAATATTTTTGTACCGAGCTTGTTACTCATTGTTTAGGTGGATATGGAAACTTCTTGTGTGTGTTAGTTAATAGACTTTAATGTGCCATTCCATCCAAGTTATGTTTCACATCACGGTTCCTTCTATGCAAAAACACCTACTTTAGCCTTTGTacagattattttgtattagtaataCGTACTGAAATAAAGTGAATAGAACCAACCAAA

Function

NR:

description
PREDICTED: tetraspanin-9 isoform X1

GO: NA

KEGG:

id description
K17350 TSPAN9; tetraspanin-9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006830 True 5723 mRNA 0.40 6 21835875 21853017

Neighbor

gene id symbol gene type direction distance location
AMCG00006833 tspan9a,LOC107559293,LOC107738414,LOC107084745,LOC107672591,LOC107587031,LOC103380054 coding upstream 41470 21789880 ~ 21794405 (+)
AMCG00006827 LOC107593980,LOC107694254,LOC107720401 coding upstream 153569 21669376 ~ 21682306 (+)
AMCG00006828 NA coding upstream 212745 21622677 ~ 21623130 (+)
AMCG00006824 NA coding upstream 281225 21525700 ~ 21554650 (+)
AMCG00006823 NA coding upstream 330500 21499033 ~ 21505375 (+)
AMCG00006831 LOC100694777,LOC104940279,LOC101482493,LOC106573176 coding downstream 2884 21855901 ~ 21868236 (+)
AMCG00006836 LOC108264267,LOC107559327,LOC108414616 coding downstream 84358 21937375 ~ 21994328 (+)
AMCG00006834 NA coding downstream 143208 21996225 ~ 21999726 (+)
AMCG00006835 NA coding downstream 151335 22004352 ~ 22013831 (+)
AMCG00006843 NA coding downstream 502563 22355580 ~ 22399845 (+)
G112573 NA non-coding upstream 778902 21056350 ~ 21056973 (+)
G112566 NA non-coding upstream 803891 21024279 ~ 21031984 (+)
G112564 NA non-coding upstream 812596 21022933 ~ 21023279 (+)
G112541 NA non-coding upstream 901657 20930234 ~ 20934218 (+)
G112535 NA non-coding upstream 912370 20919527 ~ 20923505 (+)
G112754 NA non-coding downstream 198661 22051678 ~ 22058486 (+)
G112755 NA non-coding downstream 206355 22059372 ~ 22059605 (+)
G112756 LOC108412581 non-coding downstream 210687 22063704 ~ 22064035 (+)
G112757 NA non-coding downstream 212578 22065595 ~ 22065804 (+)
G112758 NA non-coding downstream 215204 22068221 ~ 22068423 (+)
AMCG00006829 NA other upstream 213367 21617632 ~ 21622508 (+)
AMCG00006820 NA other upstream 530997 21265253 ~ 21304878 (+)
G112600 NA other upstream 632674 21142865 ~ 21203201 (+)
G112567 NA other upstream 786837 21048336 ~ 21049038 (+)
AMCG00006811 NA other upstream 890898 20937497 ~ 20944977 (+)
AMCG00006865 hipk2 other downstream 1656132 23509149 ~ 23554741 (+)
AMCG00006878 ndufb2,LOC102790702 other downstream 2179072 24032089 ~ 24036112 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other downstream 2451679 24304696 ~ 24335916 (+)
AMCG00006893 ndufa9,LOC107572617,LOC107686627,LOC107732787 other downstream 2655986 24509003 ~ 24587119 (+)
G113369 LOC108442871 other downstream 3765050 25618067 ~ 25618445 (+)

Expression


Co-expression Network