AMCG00006835


Basic Information

Item Value
gene id AMCG00006835
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 22004352 ~ 22013831 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006835
ATGGGCTCGTTTGAGTGCCAGTGCAATGAGTTCTACACTGGCAATGGCACGTACTGTGAAGAATGTGGGGACCTGTCTGTGAAACTGAACATCACCTCCGCCACGACATTCGCAGCAGATGTGGCTTGGTACCCGGAGATCAATATGCTTGACGCAGATGTCAAGATGCTGTATGTTGTGTATTATAAAGAGCCGTATGACACGGCACAAGTCTCGGTGCAGAGACTGGATTCTGGGGCCACCTATCGCTTCTGCATCCGCACACAGGCCTCTACAAAAATCTGCCCAACGAACATTGCAGGCACTGTGAGAACTGCTTTAGATCCCCAGAAGATAATGAGCCAGGTGACATTGAATGTAACGGCCGGTGGAGTGGCCCTAACGTGGAACACTAAGGAAGGTTTGGGACTGGACATCCTGGGCTATAGACTGGAAGGAAAGTGTGGACAATACATCCTCAACATCTCGGCCCCAGGCAACGCCACAGCCGTCATCCTCACTGGCCTGGGTGTTTCATCAGTGTGTTCAGCTGTTTTAACAGTCAACACTAAGCTTTACGGATCAGTGAAGTCCACCCCCTTTACGTTCTACACAACGGgctCAACTCTTTGTCCCACTAAGCTGTTTAAGAAATACGTCTCCCTGACCGTCGCGGTTGTCTCGTGGGATGCGGCTGAAGGATCGAGCAGCTATGACTCTATGCAATATTACGATGTTCTGTCTCCAGAGAAGATCTACTCTCTCCCTGTTTCCACTGAAACCACAGAGGCGGCCCTGACAGGGCTGCAACCCAGTCATACGTACGGAGTGTACATGCACTGTAATCCTCTCTTCAACCTCACCACTGAAGCCATGCTGATCACAACCCCAGCCTCTTCCAGCTCCCCCAGCAATGTGGCAGTCATGGTGAAGCCGCTGGGGTCAGTGTTGGTGACGTGGCTGGCACCGGTGGAGCAGACAAGCCCAGTCAGAGAATACAGGGTTTCCTATGGCCTGCTGAACAGTTCTGGACCAGCCCAGCTCCTAGCCCTGCAGGCCTCAGCGCTCGACTGCACTTTGACTGcTTTGGAAATATCTACGTCATACTTCATTTTTGTAACTGCTCTTAACTTTCAATACGAAGAAGCATCCAGTCCACTGATGTATTTCAGCACGGGTGAAGCCTCTCCCAGCTCCCCCAGCAATGTGGCAGTCATGGTGAAGCCGCTGGGGTCAGTGTTGGTGACGTGGCTGGCACCGGCGGAGCAGACAAGCCCAGTCAGAGAATACATGGTTTCCTACAGCCTGCTGAACAGTTCTGGACCAGCCCAGCTCCTAGCCCTGCAGGCCTCGGCACTGGGCTGCACCTTgacagTGTCTCTTGCTATGAATGTAATTGCAAAGAGCCCCACCAGTGTCCTTGTGAGCTGGACCAGTCCAGCATCCCTGTCAGCCTCCAGCTATGAAGTCCAGTACAGCAGAGGTCtggacagcagctcctccaCTTTAAACACCAAAGAGCAGTCAGTCCTGCTGGCAGACCTCGTGCCCAACAGCACCTACAGCATCACTGTGACGCCCATCGCCAGCGGCGCCAAGGGCAGTCCCATGTACTTAACAGTCAAAACCCCACCTGGTCAGTACTACAGCTTCCTTAAAATAGAGAGc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006835 True 1647 mRNA 0.53 11 22004352 22013831

Neighbor

gene id symbol gene type direction distance location
AMCG00006834 NA coding upstream 4626 21996225 ~ 21999726 (+)
AMCG00006836 LOC108264267,LOC107559327,LOC108414616 coding upstream 10024 21937375 ~ 21994328 (+)
AMCG00006831 LOC100694777,LOC104940279,LOC101482493,LOC106573176 coding upstream 136116 21855901 ~ 21868236 (+)
AMCG00006830 LOC105018129,LOC106573177,LOC106561385,LOC107587031,LOC107738414 coding upstream 151335 21835875 ~ 21853017 (+)
AMCG00006833 tspan9a,LOC107559293,LOC107738414,LOC107084745,LOC107672591,LOC107587031,LOC103380054 coding upstream 209947 21789880 ~ 21794405 (+)
AMCG00006843 NA coding downstream 341749 22355580 ~ 22399845 (+)
AMCG00006842 LOC105018463,LOC106560992,LOC106584495,LOC107701192,LOC103380318,LOC105913395,LOC101155025,LOC105938539 coding downstream 386263 22400094 ~ 22447422 (+)
AMCG00006844 akr1d1,LOC108425343,LOC105020260,LOC108240983,LOC102198112 coding downstream 639033 22652864 ~ 22672256 (+)
AMCG00006849 kdm5a coding downstream 675353 22689184 ~ 22714844 (+)
AMCG00006850 NA coding downstream 740857 22754688 ~ 22772629 (+)
G112573 NA non-coding upstream 947379 21056350 ~ 21056973 (+)
G112566 NA non-coding upstream 972368 21024279 ~ 21031984 (+)
G112564 NA non-coding upstream 981073 21022933 ~ 21023279 (+)
G112541 NA non-coding upstream 1070134 20930234 ~ 20934218 (+)
G112535 NA non-coding upstream 1080847 20919527 ~ 20923505 (+)
G112754 NA non-coding downstream 37847 22051678 ~ 22058486 (+)
G112755 NA non-coding downstream 45541 22059372 ~ 22059605 (+)
G112756 LOC108412581 non-coding downstream 49873 22063704 ~ 22064035 (+)
G112757 NA non-coding downstream 51764 22065595 ~ 22065804 (+)
G112758 NA non-coding downstream 54390 22068221 ~ 22068423 (+)
AMCG00006829 NA other upstream 381844 21617632 ~ 21622508 (+)
AMCG00006820 NA other upstream 699474 21265253 ~ 21304878 (+)
G112600 NA other upstream 801151 21142865 ~ 21203201 (+)
G112567 NA other upstream 955314 21048336 ~ 21049038 (+)
AMCG00006811 NA other upstream 1059375 20937497 ~ 20944977 (+)
AMCG00006865 hipk2 other downstream 1495318 23509149 ~ 23554741 (+)
AMCG00006878 ndufb2,LOC102790702 other downstream 2018258 24032089 ~ 24036112 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other downstream 2290865 24304696 ~ 24335916 (+)
AMCG00006893 ndufa9,LOC107572617,LOC107686627,LOC107732787 other downstream 2495172 24509003 ~ 24587119 (+)
G113369 LOC108442871 other downstream 3604236 25618067 ~ 25618445 (+)

Expression


Co-expression Network