AMCG00006842 (LOC105018463,LOC106560992,LOC106584495,LOC107701192,LOC103380318,LOC105913395,LOC101155025,LOC105938539)


Basic Information

Item Value
gene id AMCG00006842
gene name LOC105018463,LOC106560992,LOC106584495,LOC107701192,LOC103380318,LOC105913395,LOC101155025,LOC105938539
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 22400094 ~ 22447422 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006842
ATGCACAAACCCTTCCGACAGTGGATCTTCTTCGTGTTCTTGTGTTTCGGGATCATCTATCTAAAACTGGGTGTACTGCTGTCAGTGTATTACCCGCAGATCTTTCTCATCCTCACCAGTGGTAGCTACCTAGCCCTGTCTTCGGTGGTAGCTTTGGGTGCAAACATCATCTGCAATAAGATACCCGGGCTGGCCCCTCGGCAACGGGCAATATGCCAGAGTCGGCCCGACGCCATCATCGTCATTGGAGAGGGAGCACAGCTGGGCATCAATGAGTGTCAGTACCAGTTTCGCTATGGCCGGTGGAACTGTTCTGCGCTGGGCGAGAAAACAGTGTTCGGGCAGGAACTTCGAGTAGGTAGCAGGGAAGCTGCGTTTACATATGCCATTACAGCTGCCGGGGTGGCCCATGCGGTCACGGCAGCCTGTAGCCAGGGCAACCTCAGCAACTGTGGCTGCGACAGGGAGAAGCAAGGTTACTACAACCAGGAGGAGGGCTGGAAATGGGGCGGCTGCTCTGCCGACATCAAATATGGCATTGAGTTCTCCCGAAGGTTCGTAGATGCCCGCGAGATCAAAAAAAACGCAAGGAGGCTGATGAACCTTCATAACAATGAGGCAGGAAGAAAGATCCTGGAGGAAAGGATGAAGCTGGAGTGCAAATGCCACGGTGTTTCCGGCTCATGCACCACCAAGACGTGCTGGACCACCCTGCCCAAGTTCCGCGAGATTGGATATATCTTGAAGGAGAAGTACAACGAGGCTGTGCATGTGGAGGTGGTGAGAGCCAGCCGCCTGCGCCAGCCCACCTTTTTGAAAGTCAAGAAGACGCAGAGCTACCGGAAGCCGATGGAGACGGACTTGGTGTACATCGAGAGGTCACCCAACTACTGTGAGGAGGACACCACCACTGGGAGCGCCGGGACCCAGGGGCGGCTCTGTAACCGCACCTCCCTCCACACGGACGGCTGCGATCTGATGTGCTGCGGACGGGGCTACAACACGCACCAATATACCAAAGTGTCGCAGTGCCATTGTAAATTCCAGTGGTGCTGTTTTGTCAAGTGCAACACGTGCAGCACCAGGACGGAGGTTTTTACTTGCAAATAA

Function

NR:

description
PREDICTED: protein Wnt-7b isoform X1

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K00572 WNT7; wingless-type MMTV integration site family, member 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006842 True 1110 mRNA 0.55 5 22400094 22447422

Neighbor

gene id symbol gene type direction distance location
AMCG00006843 NA coding upstream 249 22355580 ~ 22399845 (+)
AMCG00006835 NA coding upstream 386263 22004352 ~ 22013831 (+)
AMCG00006834 NA coding upstream 400368 21996225 ~ 21999726 (+)
AMCG00006836 LOC108264267,LOC107559327,LOC108414616 coding upstream 405766 21937375 ~ 21994328 (+)
AMCG00006831 LOC100694777,LOC104940279,LOC101482493,LOC106573176 coding upstream 531858 21855901 ~ 21868236 (+)
AMCG00006844 akr1d1,LOC108425343,LOC105020260,LOC108240983,LOC102198112 coding downstream 205442 22652864 ~ 22672256 (+)
AMCG00006849 kdm5a coding downstream 241762 22689184 ~ 22714844 (+)
AMCG00006850 NA coding downstream 307266 22754688 ~ 22772629 (+)
AMCG00006851 usp15 coding downstream 327298 22774720 ~ 22805606 (+)
AMCG00006853 NA coding downstream 361881 22809303 ~ 22817363 (+)
G112807 NA non-coding upstream 88634 22294688 ~ 22311460 (+)
G112802 NA non-coding upstream 141708 22257550 ~ 22258386 (+)
G112762 NA non-coding upstream 188302 22137485 ~ 22211792 (+)
G112758 NA non-coding upstream 331671 22068221 ~ 22068423 (+)
G112757 NA non-coding upstream 334290 22065595 ~ 22065804 (+)
G112832 NA non-coding downstream 8340 22455762 ~ 22455964 (+)
G112868 NA non-coding downstream 235538 22682960 ~ 22683187 (+)
G112938 NA non-coding downstream 416563 22863985 ~ 22864508 (+)
G112940 NA non-coding downstream 429967 22877389 ~ 22881356 (+)
G112954 NA non-coding downstream 505758 22953180 ~ 22956200 (+)
AMCG00006829 NA other upstream 777586 21617632 ~ 21622508 (+)
AMCG00006820 NA other upstream 1095216 21265253 ~ 21304878 (+)
G112600 NA other upstream 1196893 21142865 ~ 21203201 (+)
G112567 NA other upstream 1351056 21048336 ~ 21049038 (+)
AMCG00006811 NA other upstream 1455117 20937497 ~ 20944977 (+)
AMCG00006865 hipk2 other downstream 1061727 23509149 ~ 23554741 (+)
AMCG00006878 ndufb2,LOC102790702 other downstream 1584667 24032089 ~ 24036112 (+)
AMCG00006884 ccnd2a,ccnd2,LOC106573197,LOC106561356,LOC107575166,LOC107686624,LOC107732799 other downstream 1857274 24304696 ~ 24335916 (+)
AMCG00006893 ndufa9,LOC107572617,LOC107686627,LOC107732787 other downstream 2061581 24509003 ~ 24587119 (+)
G113369 LOC108442871 other downstream 3170645 25618067 ~ 25618445 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_024387 wnt7bb coding NC_007136.7 CM002909.2 2002715 ~ 2081371 (-)
grasscarp (Ctenopharyngodon idella) CI01000020_00734012_00742045 WNT7BA, WNT7BB, WNT7B coding CI01000020 null 733617 ~ 742045 (-)